| Definition | Burkholderia glumae BGR1 chromosome chromosome 2, complete sequence. |
|---|---|
| Accession | NC_012721 |
| Length | 2,827,333 |
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The map label for this gene is yebQ [H]
Identifier: 238024309
GI number: 238024309
Start: 1086407
End: 1087798
Strand: Reverse
Name: yebQ [H]
Synonym: bglu_2g08970
Alternate gene names: 238024309
Gene position: 1087798-1086407 (Counterclockwise)
Preceding gene: 238024311
Following gene: 238024308
Centisome position: 38.47
GC content: 71.05
Gene sequence:
>1392_bases ATGTCCGCCAACCACCTGCAGTCGCTGCGCGTCCCGCATCAGGACGGCCTGCCGACGAACCAACGGATCGCGGCGCTGAT CGCCATTTCACTGGCCGTCGCAATGGCCACCCTCGACACCGCGATTACCAACACCGCCCTGCCCACCATCGCGGCCAGTA TCGGTGCCGACCACGCCTCCGTGATCTGGGTGGTCAACGCCTATCAGCTGGCGATGGTCGCGACGCTGCTGCCGTTCGCG TCGCTGGGCGAGATCGCGGGACACCGGCGCGTCTACATCGCGGGGCTGGCGCTCTTCAGCGCCAGTTCGCTGGCCTGCGG CCTCGCGTGGTCGCTGCCCACGCTCGCCACGGCGCGCGCGCTGCAAGGCGTGGGAGCGGCCGCCATCATGAGCGTCAATA CCGCGCTGGTCCGCTTCTCCTATCCGGCACGGCTGCTCGGGCGCGGCGTGGGACTGAACGCGCTGGTGGTGGCCGTGTCG TTCACGGTGGGCCCGACCGTGGCGTCGGCGATCCTGTCCGTGACGACCTGGCACTGGCTGTTCCTCGTCAACGTGCCGGT GGGCCTGGCCGCCATCGCGATGGCGGCCGGCACACTGCCGGTCACGCAACGCGCCCGGCACGGCTTCGACATGGCCGCCG CGCTGCTTTGCGCGATTTTCTTTGCATTCCTGATCCTTGGCCTGGGCACCATCGCGCACGATGGCATGACGCACACCGTC ATCGCCGAATGGGTCATCGCAGCGCTGGGCGGCTACGCGCTGCTGCGGCGCCAGGCCAGCCATCCGGCGCCGATGCTGGC CGTGGACCTGTTCCGGCGCCCGGTGTTCTCGCTGTCCGCGCTCACCTCGGTCTGCTCGTTCGCCACGCAGGGCTGCGCGT TCGTCTCGCTGCCGTTCTTCCTGCAGATCGGGCTCGGCAACAGCCAGGTCGCCACGGGTTTCCTGATGACGCCCTGGCCC GCCGTGGTGGCGGTCATGGCGCCCATCGCCGGGCGCCTTTCGGATCGCTACCCGGCCGGCGTGCTCGGCAGCGTCGGGCT CCTGGCGCTGGCGATCGGCATGGCCTCGCTGGCCACGCTGCCGCCCGCGCCCTCGTCGTTCGCGCTCGTCTGGCGCATGG CGCTGTGCGGTGCCGGTTTCGGCTTCTTCCAGGCGCCGAACCTGAAGGCGCTGATGGGCAGCGCGCCGCCTCGGCGCAGC GGGGCGGCCAGCGGCATCGTCGCCACGGCACGCCTGCTCGGGCAGACGCTCGGCGCCGCGCTGGTGGCGCTGTGCTTTCA CGCGGCGGGCACGCACGGCCCGATCGTCGCGCTCTGGACCGGCAGCGGGTTCGCGCTGATGGGCACCGTGGTCAGTTGCT TCCGCTTGCTGCCGTACCGGCGGCAAGCCTGA
Upstream 100 bases:
>100_bases GCTTCACCATTCATTCAGCGGATATCTCCATTTCAAACATCCATTGGATTCATTCGCGAGGCGATGCGAGAGTATCCGCT CTCCCATTTCTCTCCTCGCC
Downstream 100 bases:
>100_bases GCGCGCAACGTCCGGCCCGGCTCGCGGTGCGCATCACGCTCCGCGTCACGGCCGGCGATCGAATCATCCAGTGCCGGCAG CGATATTTTCGATTGCCATT
Product: major facilitator superfamily transporter
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 463; Mature: 462
Protein sequence:
>463_residues MSANHLQSLRVPHQDGLPTNQRIAALIAISLAVAMATLDTAITNTALPTIAASIGADHASVIWVVNAYQLAMVATLLPFA SLGEIAGHRRVYIAGLALFSASSLACGLAWSLPTLATARALQGVGAAAIMSVNTALVRFSYPARLLGRGVGLNALVVAVS FTVGPTVASAILSVTTWHWLFLVNVPVGLAAIAMAAGTLPVTQRARHGFDMAAALLCAIFFAFLILGLGTIAHDGMTHTV IAEWVIAALGGYALLRRQASHPAPMLAVDLFRRPVFSLSALTSVCSFATQGCAFVSLPFFLQIGLGNSQVATGFLMTPWP AVVAVMAPIAGRLSDRYPAGVLGSVGLLALAIGMASLATLPPAPSSFALVWRMALCGAGFGFFQAPNLKALMGSAPPRRS GAASGIVATARLLGQTLGAALVALCFHAAGTHGPIVALWTGSGFALMGTVVSCFRLLPYRRQA
Sequences:
>Translated_463_residues MSANHLQSLRVPHQDGLPTNQRIAALIAISLAVAMATLDTAITNTALPTIAASIGADHASVIWVVNAYQLAMVATLLPFA SLGEIAGHRRVYIAGLALFSASSLACGLAWSLPTLATARALQGVGAAAIMSVNTALVRFSYPARLLGRGVGLNALVVAVS FTVGPTVASAILSVTTWHWLFLVNVPVGLAAIAMAAGTLPVTQRARHGFDMAAALLCAIFFAFLILGLGTIAHDGMTHTV IAEWVIAALGGYALLRRQASHPAPMLAVDLFRRPVFSLSALTSVCSFATQGCAFVSLPFFLQIGLGNSQVATGFLMTPWP AVVAVMAPIAGRLSDRYPAGVLGSVGLLALAIGMASLATLPPAPSSFALVWRMALCGAGFGFFQAPNLKALMGSAPPRRS GAASGIVATARLLGQTLGAALVALCFHAAGTHGPIVALWTGSGFALMGTVVSCFRLLPYRRQA >Mature_462_residues SANHLQSLRVPHQDGLPTNQRIAALIAISLAVAMATLDTAITNTALPTIAASIGADHASVIWVVNAYQLAMVATLLPFAS LGEIAGHRRVYIAGLALFSASSLACGLAWSLPTLATARALQGVGAAAIMSVNTALVRFSYPARLLGRGVGLNALVVAVSF TVGPTVASAILSVTTWHWLFLVNVPVGLAAIAMAAGTLPVTQRARHGFDMAAALLCAIFFAFLILGLGTIAHDGMTHTVI AEWVIAALGGYALLRRQASHPAPMLAVDLFRRPVFSLSALTSVCSFATQGCAFVSLPFFLQIGLGNSQVATGFLMTPWPA VVAVMAPIAGRLSDRYPAGVLGSVGLLALAIGMASLATLPPAPSSFALVWRMALCGAGFGFFQAPNLKALMGSAPPRRSG AASGIVATARLLGQTLGAALVALCFHAAGTHGPIVALWTGSGFALMGTVVSCFRLLPYRRQA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the major facilitator superfamily. TCR/tet family [H]
Homologues:
Organism=Escherichia coli, GI87081983, Length=453, Percent_Identity=49.6688741721854, Blast_Score=410, Evalue=1e-115, Organism=Escherichia coli, GI1790195, Length=299, Percent_Identity=31.438127090301, Blast_Score=130, Evalue=2e-31, Organism=Escherichia coli, GI1789042, Length=419, Percent_Identity=24.582338902148, Blast_Score=114, Evalue=1e-26, Organism=Escherichia coli, GI1788392, Length=304, Percent_Identity=30.5921052631579, Blast_Score=104, Evalue=1e-23, Organism=Escherichia coli, GI1788710, Length=335, Percent_Identity=25.0746268656716, Blast_Score=98, Evalue=1e-21, Organism=Saccharomyces cerevisiae, GI6325455, Length=156, Percent_Identity=28.8461538461538, Blast_Score=64, Evalue=4e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR020846 - InterPro: IPR011701 - InterPro: IPR016196 - InterPro: IPR001411 [H]
Pfam domain/function: PF07690 MFS_1 [H]
EC number: NA
Molecular weight: Translated: 47670; Mature: 47539
Theoretical pI: Translated: 11.11; Mature: 11.11
Prosite motif: PS50850 MFS
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 3.0 %Met (Translated Protein) 4.5 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 2.8 %Met (Mature Protein) 4.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSANHLQSLRVPHQDGLPTNQRIAALIAISLAVAMATLDTAITNTALPTIAASIGADHAS CCCCHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCE VIWVVNAYQLAMVATLLPFASLGEIAGHRRVYIAGLALFSASSLACGLAWSLPTLATARA EEEEEHHHHHHHHHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHHHHHHHHCHHHHHHHHH LQGVGAAAIMSVNTALVRFSYPARLLGRGVGLNALVVAVSFTVGPTVASAILSVTTWHWL HHCCCHHHHHHHHHHHEEECCCHHHHHCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHH FLVNVPVGLAAIAMAAGTLPVTQRARHGFDMAAALLCAIFFAFLILGLGTIAHDGMTHTV HEECCCHHHHHHHHHHCCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH IAEWVIAALGGYALLRRQASHPAPMLAVDLFRRPVFSLSALTSVCSFATQGCAFVSLPFF HHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHEEECHH LQIGLGNSQVATGFLMTPWPAVVAVMAPIAGRLSDRYPAGVLGSVGLLALAIGMASLATL EEECCCCCHHHCCEEECCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCC PPAPSSFALVWRMALCGAGFGFFQAPNLKALMGSAPPRRSGAASGIVATARLLGQTLGAA CCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH LVALCFHAAGTHGPIVALWTGSGFALMGTVVSCFRLLPYRRQA HHHHHHHHCCCCCCEEEEEECCCHHHHHHHHHHHHHCCCCCCC >Mature Secondary Structure SANHLQSLRVPHQDGLPTNQRIAALIAISLAVAMATLDTAITNTALPTIAASIGADHAS CCCHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCE VIWVVNAYQLAMVATLLPFASLGEIAGHRRVYIAGLALFSASSLACGLAWSLPTLATARA EEEEEHHHHHHHHHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHHHHHHHHCHHHHHHHHH LQGVGAAAIMSVNTALVRFSYPARLLGRGVGLNALVVAVSFTVGPTVASAILSVTTWHWL HHCCCHHHHHHHHHHHEEECCCHHHHHCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHH FLVNVPVGLAAIAMAAGTLPVTQRARHGFDMAAALLCAIFFAFLILGLGTIAHDGMTHTV HEECCCHHHHHHHHHHCCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH IAEWVIAALGGYALLRRQASHPAPMLAVDLFRRPVFSLSALTSVCSFATQGCAFVSLPFF HHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHEEECHH LQIGLGNSQVATGFLMTPWPAVVAVMAPIAGRLSDRYPAGVLGSVGLLALAIGMASLATL EEECCCCCHHHCCEEECCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCC PPAPSSFALVWRMALCGAGFGFFQAPNLKALMGSAPPRRSGAASGIVATARLLGQTLGAA CCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH LVALCFHAAGTHGPIVALWTGSGFALMGTVVSCFRLLPYRRQA HHHHHHHHCCCCCCEEEEEECCCHHHHHHHHHHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 9097040; 9278503 [H]