| Definition | Burkholderia glumae BGR1 chromosome chromosome 2, complete sequence. |
|---|---|
| Accession | NC_012721 |
| Length | 2,827,333 |
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The map label for this gene is htxA [H]
Identifier: 238024308
GI number: 238024308
Start: 1084933
End: 1085793
Strand: Reverse
Name: htxA [H]
Synonym: bglu_2g08960
Alternate gene names: 238024308
Gene position: 1085793-1084933 (Counterclockwise)
Preceding gene: 238024309
Following gene: 238024307
Centisome position: 38.4
GC content: 64.46
Gene sequence:
>861_bases ATGATTTCTGCTCAACAAGCCAGGTTCTACGCCCATCATGGTTTCGTGGTGGTCGACAATCTCTTCGATGCGGCCAAGGT CGGCGAGGCCATCCGCGCGATCGACGAACTGCTCGATCCGGCCAACCTCGGCAAGGCCTTCGAGATGGAGCCGCAGGACG GCGCAACGGTCCGGCGCATCTGGTCGCCCACGCAGAAGCACGAGGTGTTCGAGCGGCTGGCCGCCGATTCCGCGCTGCTC GACTGCATTCAGCAATTGATCGGCGACGACGTGATGTTCCATTACAGCAAGATCAACATGAAAGGGCCGAAGGTGGGCAG CATCGTGAAGTGGCACCAGGATTTTTCCTACTACCCTCACACCAACTCGGATCTGGTCACGGCGCTGATCTTCCTCGACG ACGCGACCCGCGAAAACGGCTGCCTTCGCGTGATTCCCGGCTCGCACCGCCGCGGCCTCCGCTCCCATGAGATCGACGGC TATTTCCGCGGCACCGTGCGGGACGTGGCCGAGGCCGAGGCAGTGGAAGTCGAGGTCCAGTCCGGCGGCGTGCTGTTCCT GCATTGCCTGACCCTGCATGCGTCCGCGCGCAACACCTCGAACCTGCCGCGCCGCACCTTCCTGCCGGCCTACCGCGCCG CCGATTCGTTCCCGATCTACTTCGGGCCCCACGCGGCCCACAACGAGCCGGGCGTGCGGCTGCTGCGCGGGCAAGCGTCC CGCGTGGCGCGCGTGGAAGCCGGCCTGCATCACCTGCCGATCGCCGAGCGCGATTTCGGTTCGCTCTATGAAGTGCAAGA GGGCTCGCATCTGAACAAGCAGATGTCGGACATGAAGTCAGCCGGCTACGCGGTCGCGTGA
Upstream 100 bases:
>100_bases AACCGACCAGCACGCGTCGGGATGGCAGCCACTCGCCATTCGAAACCGGCGCCAGCCCGCCTTGCGGCATTCGCTTTCTT TTTTCGATGAAGGAGAAGTG
Downstream 100 bases:
>100_bases TGCGCCGCCTGCCGATCTCCCCGCCCCATCAGACAACCGAGGTCATCATGTACCTGAGAGTGAATCCCGCATCGCACCTG AAACCCGTGATGTCCGTGCC
Product: Phytanoyl-CoA dioxygenase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 286; Mature: 286
Protein sequence:
>286_residues MISAQQARFYAHHGFVVVDNLFDAAKVGEAIRAIDELLDPANLGKAFEMEPQDGATVRRIWSPTQKHEVFERLAADSALL DCIQQLIGDDVMFHYSKINMKGPKVGSIVKWHQDFSYYPHTNSDLVTALIFLDDATRENGCLRVIPGSHRRGLRSHEIDG YFRGTVRDVAEAEAVEVEVQSGGVLFLHCLTLHASARNTSNLPRRTFLPAYRAADSFPIYFGPHAAHNEPGVRLLRGQAS RVARVEAGLHHLPIAERDFGSLYEVQEGSHLNKQMSDMKSAGYAVA
Sequences:
>Translated_286_residues MISAQQARFYAHHGFVVVDNLFDAAKVGEAIRAIDELLDPANLGKAFEMEPQDGATVRRIWSPTQKHEVFERLAADSALL DCIQQLIGDDVMFHYSKINMKGPKVGSIVKWHQDFSYYPHTNSDLVTALIFLDDATRENGCLRVIPGSHRRGLRSHEIDG YFRGTVRDVAEAEAVEVEVQSGGVLFLHCLTLHASARNTSNLPRRTFLPAYRAADSFPIYFGPHAAHNEPGVRLLRGQAS RVARVEAGLHHLPIAERDFGSLYEVQEGSHLNKQMSDMKSAGYAVA >Mature_286_residues MISAQQARFYAHHGFVVVDNLFDAAKVGEAIRAIDELLDPANLGKAFEMEPQDGATVRRIWSPTQKHEVFERLAADSALL DCIQQLIGDDVMFHYSKINMKGPKVGSIVKWHQDFSYYPHTNSDLVTALIFLDDATRENGCLRVIPGSHRRGLRSHEIDG YFRGTVRDVAEAEAVEVEVQSGGVLFLHCLTLHASARNTSNLPRRTFLPAYRAADSFPIYFGPHAAHNEPGVRLLRGQAS RVARVEAGLHHLPIAERDFGSLYEVQEGSHLNKQMSDMKSAGYAVA
Specific function: Required for hypophosphite oxidation [H]
COG id: COG5285
COG function: function code Q; Protein involved in biosynthesis of mitomycin antibiotics/polyketide fumonisin
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the PhyH family [H]
Homologues:
Organism=Homo sapiens, GI5453884, Length=245, Percent_Identity=24.4897959183673, Blast_Score=77, Evalue=1e-14, Organism=Caenorhabditis elegans, GI17544582, Length=225, Percent_Identity=23.5555555555556, Blast_Score=69, Evalue=2e-12, Organism=Caenorhabditis elegans, GI17544580, Length=227, Percent_Identity=25.1101321585903, Blast_Score=68, Evalue=5e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR008775 [H]
Pfam domain/function: PF05721 PhyH [H]
EC number: NA
Molecular weight: Translated: 31806; Mature: 31806
Theoretical pI: Translated: 6.80; Mature: 6.80
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MISAQQARFYAHHGFVVVDNLFDAAKVGEAIRAIDELLDPANLGKAFEMEPQDGATVRRI CCCCHHHHEEHHCCEEEEECHHHHHHHHHHHHHHHHHHCHHHCCCEEECCCCCCCHHHHH WSPTQKHEVFERLAADSALLDCIQQLIGDDVMFHYSKINMKGPKVGSIVKWHQDFSYYPH CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCHHEECCCCCCCCCC TNSDLVTALIFLDDATRENGCLRVIPGSHRRGLRSHEIDGYFRGTVRDVAEAEAVEVEVQ CCHHHEEEEEEEECCCCCCCEEEECCCCHHCCCCCCCCCCEEHHHHHHHHHHHEEEEEEC SGGVLFLHCLTLHASARNTSNLPRRTFLPAYRAADSFPIYFGPHAAHNEPGVRLLRGQAS CCCEEEEEEHHHHHCCCCCCCCCCHHCCHHHHCCCCCCEEECCCCCCCCCCCEEECCCHH RVARVEAGLHHLPIAERDFGSLYEVQEGSHLNKQMSDMKSAGYAVA HHHHHHHCCHHCCCCCCCCCCHHHHCCCCHHHHHHHHHHHCCCCCC >Mature Secondary Structure MISAQQARFYAHHGFVVVDNLFDAAKVGEAIRAIDELLDPANLGKAFEMEPQDGATVRRI CCCCHHHHEEHHCCEEEEECHHHHHHHHHHHHHHHHHHCHHHCCCEEECCCCCCCHHHHH WSPTQKHEVFERLAADSALLDCIQQLIGDDVMFHYSKINMKGPKVGSIVKWHQDFSYYPH CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCHHEECCCCCCCCCC TNSDLVTALIFLDDATRENGCLRVIPGSHRRGLRSHEIDGYFRGTVRDVAEAEAVEVEVQ CCHHHEEEEEEEECCCCCCCEEEECCCCHHCCCCCCCCCCEEHHHHHHHHHHHEEEEEEC SGGVLFLHCLTLHASARNTSNLPRRTFLPAYRAADSFPIYFGPHAAHNEPGVRLLRGQAS CCCEEEEEEHHHHHCCCCCCCCCCHHCCHHHHCCCCCCEEECCCCCCCCCCCEEECCCHH RVARVEAGLHHLPIAERDFGSLYEVQEGSHLNKQMSDMKSAGYAVA HHHHHHHCCHHCCCCCCCCCCHHHHCCCCHHHHHHHHHHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9791102 [H]