| Definition | Burkholderia glumae BGR1 chromosome chromosome 2, complete sequence. |
|---|---|
| Accession | NC_012721 |
| Length | 2,827,333 |
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The map label for this gene is ybjJ [C]
Identifier: 238024299
GI number: 238024299
Start: 1071919
End: 1073169
Strand: Reverse
Name: ybjJ [C]
Synonym: bglu_2g08850
Alternate gene names: 238024299
Gene position: 1073169-1071919 (Counterclockwise)
Preceding gene: 238024300
Following gene: 238024298
Centisome position: 37.96
GC content: 74.5
Gene sequence:
>1251_bases ATGACCGATTCCGTTTCCCCCGAGGCCGGCCGCGCGCCGGCCACCCGCCTCGATGCCGGCCGCCCGTGGATGCTCTATCT GATGTTCGGCCTGTACGGCGTACAGCAGGGCATGCTCGGCCCGGCCATGCCGTTCGTGCGCGCCGAACTCGGCCTCGACC TGCGTGCCGTCGGCCTGCACTTCGCCGCCTATGCGCTTGGCCTGGTGGCGATCGGCCTGCCCTATCGCTGGCTCACGCGC CGCCGCCTGCCCACCGGCCTCGGCCAGATCGCGATCCTCTCGATCGTGGTGTCGAGCGGCCTGTTCTCGCTCGCGCGCGC GCTGCCCGTCACGCTGCTGGCGGCCGTCGCGATGGGCCTGTCGGGCGGCCTCGTGCTCGCCATCGGTCAGGCCAAGCTCG GCGCGCGCTATCGCGAGCAGGCTGCCGCGCGGCTGGTGGAGGCACACGTGGTGGCCGGGCTGTGCGTGCTGGGCGGCGCG CTGCTGATCGGCGCCGCGACCTCGGCCGGCGCATCGTGGCGCGTCGCGCCGGTGCTGGTGGCGCTGATCGCGGTGGCGCT GGCCGCGTGGCCGGTGCCGGCCTATCGTCGCGACGAGGCCGCGCTGCACGCCGGCCCCGGCGCGCCCGGGCAACCGGCAG CCGGTGCCGCGGCGCGGGCGCCGCGCGCACTGCTGGTGAGCCTGTGGGCGCTGGTGATCCTCGGCATCTCGGGTGAATGG GGCGTCGGCTTCTGGGGTGCCGAGTTCCTGAAGGACACCGTGGCCGGCAACGCCTCGGCCGCCGCCACGCTGATGAGCGT CTATTTCGGCGGCACCGTGGCCGGCCGCCTCGCCAGCAGCGCGCTGCTGCGCCGACTGCACCCGCTCACGCTGCTGGCCG CGGTCGCGCTCGGCGCGATCGCGGTGTTCTGCGCGCTGCACGCCACCCGCGACCTGGCCGTCACCACCGCGCTCACCGCG CTGCTCGGCGCCTGTCTCGGCAACTTCTTCCCGCTGATCCTCGGCGCGGCGATGCGCGCCGCGCCCGACGCCGGGCCGAC CCTGAGCGCGCGCGCCTCGCAGGCGGTGGGCGTCGCGCTGCTGGTCGCGCCGTTCCTGCTCGGCATGCTGTCGGAGCACA TCGGCATGCGCGCCGCGTTCTCGCTGTTGGTGGCGTGCCCGCTCCTGATGCTGCCGTTCCTGCCCGGGCTGCGCGAGCCA AGACCGCGCACCGCCCATTACCAAGCCTCAGAAGGAGTCTCCCCGAAGTGA
Upstream 100 bases:
>100_bases GATCTCGATGTCACGCCCGAACCGGCGCCGCTCGATCTGCCCGGGCCGCCGCCGCGTGTGCCGCACGCCGGCGCCCTCTC CACGACCACCCTGCTCCGAC
Downstream 100 bases:
>100_bases GCGACATCACGTTCCTGTTCGACCTCGACGGTACGCTCGTCGATACCGACGCCCTGCACCTGAACGCCTACAACACGCTG CTCGCGCGCTGGCAGCGCGC
Product: major facilitator superfamily protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 416; Mature: 415
Protein sequence:
>416_residues MTDSVSPEAGRAPATRLDAGRPWMLYLMFGLYGVQQGMLGPAMPFVRAELGLDLRAVGLHFAAYALGLVAIGLPYRWLTR RRLPTGLGQIAILSIVVSSGLFSLARALPVTLLAAVAMGLSGGLVLAIGQAKLGARYREQAAARLVEAHVVAGLCVLGGA LLIGAATSAGASWRVAPVLVALIAVALAAWPVPAYRRDEAALHAGPGAPGQPAAGAAARAPRALLVSLWALVILGISGEW GVGFWGAEFLKDTVAGNASAAATLMSVYFGGTVAGRLASSALLRRLHPLTLLAAVALGAIAVFCALHATRDLAVTTALTA LLGACLGNFFPLILGAAMRAAPDAGPTLSARASQAVGVALLVAPFLLGMLSEHIGMRAAFSLLVACPLLMLPFLPGLREP RPRTAHYQASEGVSPK
Sequences:
>Translated_416_residues MTDSVSPEAGRAPATRLDAGRPWMLYLMFGLYGVQQGMLGPAMPFVRAELGLDLRAVGLHFAAYALGLVAIGLPYRWLTR RRLPTGLGQIAILSIVVSSGLFSLARALPVTLLAAVAMGLSGGLVLAIGQAKLGARYREQAAARLVEAHVVAGLCVLGGA LLIGAATSAGASWRVAPVLVALIAVALAAWPVPAYRRDEAALHAGPGAPGQPAAGAAARAPRALLVSLWALVILGISGEW GVGFWGAEFLKDTVAGNASAAATLMSVYFGGTVAGRLASSALLRRLHPLTLLAAVALGAIAVFCALHATRDLAVTTALTA LLGACLGNFFPLILGAAMRAAPDAGPTLSARASQAVGVALLVAPFLLGMLSEHIGMRAAFSLLVACPLLMLPFLPGLREP RPRTAHYQASEGVSPK >Mature_415_residues TDSVSPEAGRAPATRLDAGRPWMLYLMFGLYGVQQGMLGPAMPFVRAELGLDLRAVGLHFAAYALGLVAIGLPYRWLTRR RLPTGLGQIAILSIVVSSGLFSLARALPVTLLAAVAMGLSGGLVLAIGQAKLGARYREQAAARLVEAHVVAGLCVLGGAL LIGAATSAGASWRVAPVLVALIAVALAAWPVPAYRRDEAALHAGPGAPGQPAAGAAARAPRALLVSLWALVILGISGEWG VGFWGAEFLKDTVAGNASAAATLMSVYFGGTVAGRLASSALLRRLHPLTLLAAVALGAIAVFCALHATRDLAVTTALTAL LGACLGNFFPLILGAAMRAAPDAGPTLSARASQAVGVALLVAPFLLGMLSEHIGMRAAFSLLVACPLLMLPFLPGLREPR PRTAHYQASEGVSPK
Specific function: Unknown
COG id: COG0477
COG function: function code GEPR; Permeases of the major facilitator superfamily
Gene ontology:
Cell location: Integral membrane protein (Potential) [C]
Metaboloic importance: Non Essential [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: 10-20 Molecules/Cell [C]
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 42581; Mature: 42450
Theoretical pI: Translated: 10.86; Mature: 10.86
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 3.6 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 3.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTDSVSPEAGRAPATRLDAGRPWMLYLMFGLYGVQQGMLGPAMPFVRAELGLDLRAVGLH CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHH FAAYALGLVAIGLPYRWLTRRRLPTGLGQIAILSIVVSSGLFSLARALPVTLLAAVAMGL HHHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC SGGLVLAIGQAKLGARYREQAAARLVEAHVVAGLCVLGGALLIGAATSAGASWRVAPVLV CCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHH ALIAVALAAWPVPAYRRDEAALHAGPGAPGQPAAGAAARAPRALLVSLWALVILGISGEW HHHHHHHHHCCCCCCCCCCCCEECCCCCCCCCCCCHHHHCHHHHHHHHHHHHHHCCCCCC GVGFWGAEFLKDTVAGNASAAATLMSVYFGGTVAGRLASSALLRRLHPLTLLAAVALGAI CCCHHHHHHHHHHHCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH AVFCALHATRDLAVTTALTALLGACLGNFFPLILGAAMRAAPDAGPTLSARASQAVGVAL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHH LVAPFLLGMLSEHIGMRAAFSLLVACPLLMLPFLPGLREPRPRTAHYQASEGVSPK HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC >Mature Secondary Structure TDSVSPEAGRAPATRLDAGRPWMLYLMFGLYGVQQGMLGPAMPFVRAELGLDLRAVGLH CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHH FAAYALGLVAIGLPYRWLTRRRLPTGLGQIAILSIVVSSGLFSLARALPVTLLAAVAMGL HHHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC SGGLVLAIGQAKLGARYREQAAARLVEAHVVAGLCVLGGALLIGAATSAGASWRVAPVLV CCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHH ALIAVALAAWPVPAYRRDEAALHAGPGAPGQPAAGAAARAPRALLVSLWALVILGISGEW HHHHHHHHHCCCCCCCCCCCCEECCCCCCCCCCCCHHHHCHHHHHHHHHHHHHHCCCCCC GVGFWGAEFLKDTVAGNASAAATLMSVYFGGTVAGRLASSALLRRLHPLTLLAAVALGAI CCCHHHHHHHHHHHCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH AVFCALHATRDLAVTTALTALLGACLGNFFPLILGAAMRAAPDAGPTLSARASQAVGVAL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHH LVAPFLLGMLSEHIGMRAAFSLLVACPLLMLPFLPGLREPRPRTAHYQASEGVSPK HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: NA