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The map label for this gene is mrkC [H]

Identifier: 238024295

GI number: 238024295

Start: 1065411

End: 1068047

Strand: Reverse

Name: mrkC [H]

Synonym: bglu_2g08800

Alternate gene names: 238024295

Gene position: 1068047-1065411 (Counterclockwise)

Preceding gene: 238024296

Following gene: 238024294

Centisome position: 37.78

GC content: 66.51

Gene sequence:

>2637_bases
CTGAACATCCTTCGAGCAAGTCCGAGGCGCAGTCTTATTGCCTCTGCGGCAAGCGCCCTAATCCTATACATCTTTAGTGC
CTTATATATGCGTTTGCGCTGTGTGTTTACCCTGTCGATATTTGTGTCAGCGGGAGCGGTAACGCGTAACGTACAGGCGA
CGGGAGTGCAGTTTAACGAACAGTTCTTGCAACATCCGGATGGCGTGCGGGTGGATCTTAGCCGCTTCGACAAAGGCAAC
GTGGCGGTACCTGGCTCGTATCGCTCAGACTTATACGTCAACGGCGCTTGGGCCGGCCGTACCGATATCACGCTGAGCCA
GATCGGCGACGATCCGGCCAACGTACAAACCTGCTTCGATCGCGAGTTGCTGATGCGGGTCGGTGTGGCGCTCTCAAAGC
TCTCCACGCAGACCCGTGCAACGCTGGCAACCGCCGAGACCGGCGCCTGCGTCACGCTCGACGCGCTGGTGCCCGACGCC
AGCGCCGTGTTCGACAACGGCGCGCAGCGGCTCGACGTCAGCGTGCCGCAGGCGTTCCAGAGCCGCGACGCGCGCGGCTA
CGTTGATCCGCGCGAGTGGGACGACGGCGTACCGGCCGCGCTGTTGCAATACAACGCGAACGTCTATCGCTCCGAAGGAC
AGGGCGAGCCGTCGACGCAGGCCTACCTGGGGATGACCGCCGGCTTCAACGCCGGGCCGTGGCGCTTCCGGCACAACGGC
AACCTGACCTACAACTCGCGGCAAGGCACGCATTACCAGTCGATCCAGACCTACGTGCAGCGCTCGATCGCGCGGCTCAA
GAGCCAGTTCATGATCGGCGAGGCCTATACCGACGGCACGATGTTCGACAGCGTCGGGTTTCGCGGCGTGCGGATCGCGA
GCGACGAGCGCATGTACCCGGAGTCGCAGCGCGGCTATGCGCCGACCGTGCATGGCATCGCCAACAGCAACGCGCTAGTG
CAGGTGCGGCAGAACGGCAACGTCATCTACAGCACCAACGTCGCGGCCGGCCCGTTCGAGATCGACGATCTCTATCCGAC
CGGATACGGCGGCGATCTCGAGGTCGTGGTGACCGAAGCCGACGGCAGAATCCACACCTTCAACGTGCCGTATGCGTCAA
CCGTGGATGCGCTGCGGCCCGGCATCACGCATTTCAGCGTGACGGCCGGCCAGTATCGCGACCCGACGCTGTCGACCCAG
CCAGCGCTGTTCCAGGCCACCGTCCGGCACGGCTTCACGAACCTGATCACGGTCTACGGCGGCGTGACGGCCGCGCCGGG
CTACGGCGCCGGCCTGGTGGGGGTGGCGCTCAACACGCGCTTCGGCGCATTCGGCCTCGACATCACCCACGCCAACACGA
GCCTGCCGGGAGTCGGCACGCGCCATGGCCAGAGCGTGAAGCTCTCGTACAGCAAGCTGATCGCCCCGACATCCACCAAC
CTCACGGTGGCCGCCTATCGCTATTCGAGCAGCGGCTACCTGAGCCTGCACGACGCGATGCAGATGCGCGAGCCGTCGGC
CAGCCGGCCGGATGGGCCGTGGCGCGGCGGCATCCTGCGCGGGCAGTTGCAGATCGCCGTGAACCAGACGCTGCCGTCGG
GATGGGGATCGTTCTATGCGTCGGGCTCAACGGTCAGCTACTGGAACCGGCACGGCACCGACACGCAGTTCCAGGCCGGC
TACAACAACAATTTCCGGCGCCTCAATTTCGGCGTGGCCGTGGCGCGCCAGTTCGATGCCACGCGCCGCCGGTGGGACAA
CCGGGTCATGCTGAACGTCTCGCTGCCGCTGGGCGGCAGCCGCCATCCGGTCTATGCGTCGACCAACCTGCAGCGTGACT
CGAGCGGCGAGACCTCGCTGCAGCAATCGTTGGCGGGCACGCTCGGCGCGGCCAACCAGCTGAACTACGGCATCAACCTC
GGCCGCGCGAGCTTCCGCGGCGCGGGCGCCTCCACCAACTTGAGCGGCAACGCGTCGTATCTGTCGCGCTATGCGACGGT
GACCGTGAACGCGTCGAAGGGCACGGGCTTCACGCAGTACGGCGGCGGCCTGTCGGGCGGCATGGTCGCCTATGCGGGTG
GGGTCGCGTTCACCCCGAGCATGAGCGAAACGGTGGCGGTCATCGAGGCCAAGGGCGCGAGCGGCGCGCGCGTCATGTCC
GGCAGCGGTCTGCGCATCGATCCGTTCGGGCACGCGATCGTGTCGAGCCTGATGCCGTTCCAGACCAACGAGGTCGAGAT
CGATCCGAAAGGCCTGCCGATGAGCGTCGAACTGAAATCGACCACGCAGCATGCCGTGCCGACGGCGGGCGCGGTGGTGC
GGCTGCGCTTCCGGACAGAAGGTGGCGGGCGCTCCGTGATCATGCGGATCCGCACTCGCGACGGCAAGCCGGTGCCGTTC
GGCGCCGAGGTGTTCAACGCGCAAGGGCAGTCTGCCGGCACCGTGGCGCAGATGGGCAGCGTCGTGTTGCGCGGCGTGAA
GGCGAACACGGGCACGCTGCGCGTGAAGTGGGGCGAGGCGGCCTCGGACGGCTGCACGCTGTCGTACAGGCTGCCGGTCG
CGAAGCACGGGCGCGCGGCGCGCTGGACCTCCACGTACGCGGTTTGTCTGCCCGCTCCCGCCGAGCGCGCAAAATAG

Upstream 100 bases:

>100_bases
CGCGAAAGTGCATTACACGACCGTGAATGACTACGGCGCCTTCGTCGATGGCGAAACGCCCGTACTACCAAGCGGCGCGG
CGTTACTGAAGTGAAACTGG

Downstream 100 bases:

>100_bases
CCGACAGAACGGATGCAGTGCCGCACATCGCCGATTTCGTGTAGTACTACATACCTAATTTTGAAGAATACGGAGGTAAC
ACGGACATGTTGGATGTAAT

Product: Fimbrial biogenesis outer membrane usher protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 878; Mature: 878

Protein sequence:

>878_residues
MNILRASPRRSLIASAASALILYIFSALYMRLRCVFTLSIFVSAGAVTRNVQATGVQFNEQFLQHPDGVRVDLSRFDKGN
VAVPGSYRSDLYVNGAWAGRTDITLSQIGDDPANVQTCFDRELLMRVGVALSKLSTQTRATLATAETGACVTLDALVPDA
SAVFDNGAQRLDVSVPQAFQSRDARGYVDPREWDDGVPAALLQYNANVYRSEGQGEPSTQAYLGMTAGFNAGPWRFRHNG
NLTYNSRQGTHYQSIQTYVQRSIARLKSQFMIGEAYTDGTMFDSVGFRGVRIASDERMYPESQRGYAPTVHGIANSNALV
QVRQNGNVIYSTNVAAGPFEIDDLYPTGYGGDLEVVVTEADGRIHTFNVPYASTVDALRPGITHFSVTAGQYRDPTLSTQ
PALFQATVRHGFTNLITVYGGVTAAPGYGAGLVGVALNTRFGAFGLDITHANTSLPGVGTRHGQSVKLSYSKLIAPTSTN
LTVAAYRYSSSGYLSLHDAMQMREPSASRPDGPWRGGILRGQLQIAVNQTLPSGWGSFYASGSTVSYWNRHGTDTQFQAG
YNNNFRRLNFGVAVARQFDATRRRWDNRVMLNVSLPLGGSRHPVYASTNLQRDSSGETSLQQSLAGTLGAANQLNYGINL
GRASFRGAGASTNLSGNASYLSRYATVTVNASKGTGFTQYGGGLSGGMVAYAGGVAFTPSMSETVAVIEAKGASGARVMS
GSGLRIDPFGHAIVSSLMPFQTNEVEIDPKGLPMSVELKSTTQHAVPTAGAVVRLRFRTEGGGRSVIMRIRTRDGKPVPF
GAEVFNAQGQSAGTVAQMGSVVLRGVKANTGTLRVKWGEAASDGCTLSYRLPVAKHGRAARWTSTYAVCLPAPAERAK

Sequences:

>Translated_878_residues
MNILRASPRRSLIASAASALILYIFSALYMRLRCVFTLSIFVSAGAVTRNVQATGVQFNEQFLQHPDGVRVDLSRFDKGN
VAVPGSYRSDLYVNGAWAGRTDITLSQIGDDPANVQTCFDRELLMRVGVALSKLSTQTRATLATAETGACVTLDALVPDA
SAVFDNGAQRLDVSVPQAFQSRDARGYVDPREWDDGVPAALLQYNANVYRSEGQGEPSTQAYLGMTAGFNAGPWRFRHNG
NLTYNSRQGTHYQSIQTYVQRSIARLKSQFMIGEAYTDGTMFDSVGFRGVRIASDERMYPESQRGYAPTVHGIANSNALV
QVRQNGNVIYSTNVAAGPFEIDDLYPTGYGGDLEVVVTEADGRIHTFNVPYASTVDALRPGITHFSVTAGQYRDPTLSTQ
PALFQATVRHGFTNLITVYGGVTAAPGYGAGLVGVALNTRFGAFGLDITHANTSLPGVGTRHGQSVKLSYSKLIAPTSTN
LTVAAYRYSSSGYLSLHDAMQMREPSASRPDGPWRGGILRGQLQIAVNQTLPSGWGSFYASGSTVSYWNRHGTDTQFQAG
YNNNFRRLNFGVAVARQFDATRRRWDNRVMLNVSLPLGGSRHPVYASTNLQRDSSGETSLQQSLAGTLGAANQLNYGINL
GRASFRGAGASTNLSGNASYLSRYATVTVNASKGTGFTQYGGGLSGGMVAYAGGVAFTPSMSETVAVIEAKGASGARVMS
GSGLRIDPFGHAIVSSLMPFQTNEVEIDPKGLPMSVELKSTTQHAVPTAGAVVRLRFRTEGGGRSVIMRIRTRDGKPVPF
GAEVFNAQGQSAGTVAQMGSVVLRGVKANTGTLRVKWGEAASDGCTLSYRLPVAKHGRAARWTSTYAVCLPAPAERAK
>Mature_878_residues
MNILRASPRRSLIASAASALILYIFSALYMRLRCVFTLSIFVSAGAVTRNVQATGVQFNEQFLQHPDGVRVDLSRFDKGN
VAVPGSYRSDLYVNGAWAGRTDITLSQIGDDPANVQTCFDRELLMRVGVALSKLSTQTRATLATAETGACVTLDALVPDA
SAVFDNGAQRLDVSVPQAFQSRDARGYVDPREWDDGVPAALLQYNANVYRSEGQGEPSTQAYLGMTAGFNAGPWRFRHNG
NLTYNSRQGTHYQSIQTYVQRSIARLKSQFMIGEAYTDGTMFDSVGFRGVRIASDERMYPESQRGYAPTVHGIANSNALV
QVRQNGNVIYSTNVAAGPFEIDDLYPTGYGGDLEVVVTEADGRIHTFNVPYASTVDALRPGITHFSVTAGQYRDPTLSTQ
PALFQATVRHGFTNLITVYGGVTAAPGYGAGLVGVALNTRFGAFGLDITHANTSLPGVGTRHGQSVKLSYSKLIAPTSTN
LTVAAYRYSSSGYLSLHDAMQMREPSASRPDGPWRGGILRGQLQIAVNQTLPSGWGSFYASGSTVSYWNRHGTDTQFQAG
YNNNFRRLNFGVAVARQFDATRRRWDNRVMLNVSLPLGGSRHPVYASTNLQRDSSGETSLQQSLAGTLGAANQLNYGINL
GRASFRGAGASTNLSGNASYLSRYATVTVNASKGTGFTQYGGGLSGGMVAYAGGVAFTPSMSETVAVIEAKGASGARVMS
GSGLRIDPFGHAIVSSLMPFQTNEVEIDPKGLPMSVELKSTTQHAVPTAGAVVRLRFRTEGGGRSVIMRIRTRDGKPVPF
GAEVFNAQGQSAGTVAQMGSVVLRGVKANTGTLRVKWGEAASDGCTLSYRLPVAKHGRAARWTSTYAVCLPAPAERAK

Specific function: Involved in the export and assembly of the type 3 fimbrial subunit (mrkA) [H]

COG id: COG3188

COG function: function code NU; P pilus assembly protein, porin PapC

Gene ontology:

Cell location: Cell outer membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the fimbrial export usher family [H]

Homologues:

Organism=Escherichia coli, GI1786332, Length=821, Percent_Identity=35.5663824604141, Blast_Score=499, Evalue=1e-142,
Organism=Escherichia coli, GI1790772, Length=858, Percent_Identity=34.6153846153846, Blast_Score=476, Evalue=1e-135,
Organism=Escherichia coli, GI1789533, Length=794, Percent_Identity=35.1385390428212, Blast_Score=448, Evalue=1e-127,
Organism=Escherichia coli, GI1786744, Length=843, Percent_Identity=33.6892052194543, Blast_Score=434, Evalue=1e-123,
Organism=Escherichia coli, GI1787172, Length=862, Percent_Identity=33.4106728538283, Blast_Score=426, Evalue=1e-120,
Organism=Escherichia coli, GI1788427, Length=766, Percent_Identity=32.5065274151436, Blast_Score=398, Evalue=1e-112,
Organism=Escherichia coli, GI87081778, Length=808, Percent_Identity=28.3415841584158, Blast_Score=241, Evalue=1e-64,
Organism=Escherichia coli, GI1789610, Length=818, Percent_Identity=24.4498777506112, Blast_Score=150, Evalue=4e-37,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000015
- InterPro:   IPR018030 [H]

Pfam domain/function: PF00577 Usher [H]

EC number: NA

Molecular weight: Translated: 93978; Mature: 93978

Theoretical pI: Translated: 9.92; Mature: 9.92

Prosite motif: PS01151 FIMBRIAL_USHER

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNILRASPRRSLIASAASALILYIFSALYMRLRCVFTLSIFVSAGAVTRNVQATGVQFNE
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECEEECCEEECH
QFLQHPDGVRVDLSRFDKGNVAVPGSYRSDLYVNGAWAGRTDITLSQIGDDPANVQTCFD
HHHCCCCCCEEEHHHCCCCCEEECCCCCCCEEEEEEECCCCCEEHHHCCCCCCHHHHHHH
RELLMRVGVALSKLSTQTRATLATAETGACVTLDALVPDASAVFDNGAQRLDVSVPQAFQ
HHHHHHHHHHHHHHHHHHHHEEEECCCCCEEEEEECCCCHHHHHCCCCCEEEECCCHHHH
SRDARGYVDPREWDDGVPAALLQYNANVYRSEGQGEPSTQAYLGMTAGFNAGPWRFRHNG
CCCCCCCCCCCCCCCCCCHHHEEECCCEEECCCCCCCCCEEEEEEECCCCCCCEEEEECC
NLTYNSRQGTHYQSIQTYVQRSIARLKSQFMIGEAYTDGTMFDSVGFRGVRIASDERMYP
CEEECCCCCCHHHHHHHHHHHHHHHHHHHEEEEEEECCCCEECCCCCCEEEEECCCCCCC
ESQRGYAPTVHGIANSNALVQVRQNGNVIYSTNVAAGPFEIDDLYPTGYGGDLEVVVTEA
CCCCCCCCEEEECCCCCEEEEEECCCCEEEECCCCCCCEECCCCCCCCCCCCEEEEEEEC
DGRIHTFNVPYASTVDALRPGITHFSVTAGQYRDPTLSTQPALFQATVRHGFTNLITVYG
CCEEEEEECCCHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHCCCEEEEEEC
GVTAAPGYGAGLVGVALNTRFGAFGLDITHANTSLPGVGTRHGQSVKLSYSKLIAPTSTN
CCCCCCCCCCCEEEEEEECCCCEEEEEEEECCCCCCCCCCCCCCEEEEEHHHEECCCCCC
LTVAAYRYSSSGYLSLHDAMQMREPSASRPDGPWRGGILRGQLQIAVNQTLPSGWGSFYA
EEEEEEEECCCCEEEEHHHHHHCCCCCCCCCCCCCCCEEEEEEEEEEECCCCCCCHHHEE
SGSTVSYWNRHGTDTQFQAGYNNNFRRLNFGVAVARQFDATRRRWDNRVMLNVSLPLGGS
CCCEEEECCCCCCCCEEECCCCCCEEEEEEEEHHHHHHHHHHHHCCCEEEEEEECCCCCC
RHPVYASTNLQRDSSGETSLQQSLAGTLGAANQLNYGINLGRASFRGAGASTNLSGNASY
CCCEEEECCCCCCCCCCHHHHHHHHHHHCCCCCCCCCEEECCCCCCCCCCCCCCCCCHHH
LSRYATVTVNASKGTGFTQYGGGLSGGMVAYAGGVAFTPSMSETVAVIEAKGASGARVMS
EEEEEEEEEECCCCCCCHHCCCCCCCCEEEEECCEEECCCCCCEEEEEEECCCCCCEEEC
GSGLRIDPFGHAIVSSLMPFQTNEVEIDPKGLPMSVELKSTTQHAVPTAGAVVRLRFRTE
CCCCEECCCHHHHHHHHCCCCCCEEEECCCCCEEEEEECCCCCCCCCCCCEEEEEEEEEC
GGGRSVIMRIRTRDGKPVPFGAEVFNAQGQSAGTVAQMGSVVLRGVKANTGTLRVKWGEA
CCCCEEEEEEECCCCCCCCCCHHHHCCCCCCCCHHHHHHHHHEEEEECCCCEEEEEECCC
ASDGCTLSYRLPVAKHGRAARWTSTYAVCLPAPAERAK
CCCCCEEEEECCHHHCCCCEEECCEEEEEECCCHHHCC
>Mature Secondary Structure
MNILRASPRRSLIASAASALILYIFSALYMRLRCVFTLSIFVSAGAVTRNVQATGVQFNE
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECEEECCEEECH
QFLQHPDGVRVDLSRFDKGNVAVPGSYRSDLYVNGAWAGRTDITLSQIGDDPANVQTCFD
HHHCCCCCCEEEHHHCCCCCEEECCCCCCCEEEEEEECCCCCEEHHHCCCCCCHHHHHHH
RELLMRVGVALSKLSTQTRATLATAETGACVTLDALVPDASAVFDNGAQRLDVSVPQAFQ
HHHHHHHHHHHHHHHHHHHHEEEECCCCCEEEEEECCCCHHHHHCCCCCEEEECCCHHHH
SRDARGYVDPREWDDGVPAALLQYNANVYRSEGQGEPSTQAYLGMTAGFNAGPWRFRHNG
CCCCCCCCCCCCCCCCCCHHHEEECCCEEECCCCCCCCCEEEEEEECCCCCCCEEEEECC
NLTYNSRQGTHYQSIQTYVQRSIARLKSQFMIGEAYTDGTMFDSVGFRGVRIASDERMYP
CEEECCCCCCHHHHHHHHHHHHHHHHHHHEEEEEEECCCCEECCCCCCEEEEECCCCCCC
ESQRGYAPTVHGIANSNALVQVRQNGNVIYSTNVAAGPFEIDDLYPTGYGGDLEVVVTEA
CCCCCCCCEEEECCCCCEEEEEECCCCEEEECCCCCCCEECCCCCCCCCCCCEEEEEEEC
DGRIHTFNVPYASTVDALRPGITHFSVTAGQYRDPTLSTQPALFQATVRHGFTNLITVYG
CCEEEEEECCCHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHCCCEEEEEEC
GVTAAPGYGAGLVGVALNTRFGAFGLDITHANTSLPGVGTRHGQSVKLSYSKLIAPTSTN
CCCCCCCCCCCEEEEEEECCCCEEEEEEEECCCCCCCCCCCCCCEEEEEHHHEECCCCCC
LTVAAYRYSSSGYLSLHDAMQMREPSASRPDGPWRGGILRGQLQIAVNQTLPSGWGSFYA
EEEEEEEECCCCEEEEHHHHHHCCCCCCCCCCCCCCCEEEEEEEEEEECCCCCCCHHHEE
SGSTVSYWNRHGTDTQFQAGYNNNFRRLNFGVAVARQFDATRRRWDNRVMLNVSLPLGGS
CCCEEEECCCCCCCCEEECCCCCCEEEEEEEEHHHHHHHHHHHHCCCEEEEEEECCCCCC
RHPVYASTNLQRDSSGETSLQQSLAGTLGAANQLNYGINLGRASFRGAGASTNLSGNASY
CCCEEEECCCCCCCCCCHHHHHHHHHHHCCCCCCCCCEEECCCCCCCCCCCCCCCCCHHH
LSRYATVTVNASKGTGFTQYGGGLSGGMVAYAGGVAFTPSMSETVAVIEAKGASGARVMS
EEEEEEEEEECCCCCCCHHCCCCCCCCEEEEECCEEECCCCCCEEEEEEECCCCCCEEEC
GSGLRIDPFGHAIVSSLMPFQTNEVEIDPKGLPMSVELKSTTQHAVPTAGAVVRLRFRTE
CCCCEECCCHHHHHHHHCCCCCCEEEECCCCCEEEEEECCCCCCCCCCCCEEEEEEEEEC
GGGRSVIMRIRTRDGKPVPFGAEVFNAQGQSAGTVAQMGSVVLRGVKANTGTLRVKWGEA
CCCCEEEEEEECCCCCCCCCCHHHHCCCCCCCCHHHHHHHHHEEEEECCCCEEEEEECCC
ASDGCTLSYRLPVAKHGRAARWTSTYAVCLPAPAERAK
CCCCCEEEEECCHHHCCCCEEECCEEEEEECCCHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 1670938 [H]