Click here to switch to the map view.

The map label for this gene is ypdB [C]

Identifier: 238024200

GI number: 238024200

Start: 944184

End: 944915

Strand: Reverse

Name: ypdB [C]

Synonym: bglu_2g07800

Alternate gene names: 238024200

Gene position: 944915-944184 (Counterclockwise)

Preceding gene: 238024201

Following gene: 238024199

Centisome position: 33.42

GC content: 65.16

Gene sequence:

>732_bases
ATGCCGACAGCACTGATCGCCGACGACGAACCGAACCTGTCCGCCGAGCTCGCCGCGCGCCTCGGCACGCTGTGGCCCGA
GCTGGAGATCGTCGGGATGCCGCGCAACGGCGTGGACGCGCTCGCGGAGCTGAATGCGAAGCGCCCCGATTTCGCCTTCC
TCGACATCCGGATGCCGGGTGTCGACGGGCTGAAAATCGCCAGCCTCGTGCCGCACATACACGTCGTCTTCGTGACGTCC
TACGACGAGTATGCGGTTCAGGCATTCGACCAGTCGGCAATCGACTATCTGCTGAAACCCGTCACCGACGACCGACTGCT
GCGCTGCATCGTCAAGCTGCAGCGCGGCGGCCCTGCCCCCACCCACACCGCGCTGCTGACGAGCGTGCCGGAGCAGCGCG
ACGCCGCGCCCATCCGCTGGCTAACCGTTGGCCTACGGGACACGACCCGGCTCGTCTCGGTGGACGAGGTGCTGTATTTC
CAGGCGGCAGACAAATACACGGAGGTCGTGACTGCGAGCGAGCGTCACGTCATTCGCACGCCCCTCAAGGAAATGCTCCC
GCGGCTCGACAGTGCGCGTTTTGCGCAAGTGCATCGCGGCGTGATCGTCGCCTATGCCGCGATCGACCATATCGAGCGAG
ACTTGCTTGGCCGCCAACGCATCCATTTGCGCGGCAGCGGCGACGTTTTGCCGGTCAGCCGCGCATGTGCGGGGCTTTTC
AAACAGATGTGA

Upstream 100 bases:

>100_bases
ATGATCAGCCTCTACGGCGAGCGCGGCCGCGTATCGGTTGGCACGAATGCCGACGCCAGACGCGGCGTGACCGCAACCTT
GCAGATCCCGATTACCTGAT

Downstream 100 bases:

>100_bases
ACAATCGGGGCGTCAGGCAGGCTTTCTCGTCATTGAGGCTGCGCCATGTGCGCTCGACGAATTTTCGCGGCCACTTCCGG
GCGGACAACTGCTGGATGAG

Product: LytR/AlgR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 243; Mature: 242

Protein sequence:

>243_residues
MPTALIADDEPNLSAELAARLGTLWPELEIVGMPRNGVDALAELNAKRPDFAFLDIRMPGVDGLKIASLVPHIHVVFVTS
YDEYAVQAFDQSAIDYLLKPVTDDRLLRCIVKLQRGGPAPTHTALLTSVPEQRDAAPIRWLTVGLRDTTRLVSVDEVLYF
QAADKYTEVVTASERHVIRTPLKEMLPRLDSARFAQVHRGVIVAYAAIDHIERDLLGRQRIHLRGSGDVLPVSRACAGLF
KQM

Sequences:

>Translated_243_residues
MPTALIADDEPNLSAELAARLGTLWPELEIVGMPRNGVDALAELNAKRPDFAFLDIRMPGVDGLKIASLVPHIHVVFVTS
YDEYAVQAFDQSAIDYLLKPVTDDRLLRCIVKLQRGGPAPTHTALLTSVPEQRDAAPIRWLTVGLRDTTRLVSVDEVLYF
QAADKYTEVVTASERHVIRTPLKEMLPRLDSARFAQVHRGVIVAYAAIDHIERDLLGRQRIHLRGSGDVLPVSRACAGLF
KQM
>Mature_242_residues
PTALIADDEPNLSAELAARLGTLWPELEIVGMPRNGVDALAELNAKRPDFAFLDIRMPGVDGLKIASLVPHIHVVFVTSY
DEYAVQAFDQSAIDYLLKPVTDDRLLRCIVKLQRGGPAPTHTALLTSVPEQRDAAPIRWLTVGLRDTTRLVSVDEVLYFQ
AADKYTEVVTASERHVIRTPLKEMLPRLDSARFAQVHRGVIVAYAAIDHIERDLLGRQRIHLRGSGDVLPVSRACAGLFK
QM

Specific function: Unknown

COG id: COG3279

COG function: function code KT; Response regulator of the LytR/AlgR family

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

Organism=Escherichia coli, GI1788724, Length=246, Percent_Identity=28.4552845528455, Blast_Score=97, Evalue=1e-21,
Organism=Escherichia coli, GI87082052, Length=239, Percent_Identity=30.5439330543933, Blast_Score=92, Evalue=3e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR007492
- InterPro:   IPR001789 [H]

Pfam domain/function: PF04397 LytTR; PF00072 Response_reg [H]

EC number: NA

Molecular weight: Translated: 26952; Mature: 26820

Theoretical pI: Translated: 6.63; Mature: 6.63

Prosite motif: PS50110 RESPONSE_REGULATORY ; PS50930 HTH_LYTTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPTALIADDEPNLSAELAARLGTLWPELEIVGMPRNGVDALAELNAKRPDFAFLDIRMPG
CCCCEECCCCCCCHHHHHHHHHCCCCCEEEEECCCCCHHHHHHCCCCCCCEEEEEEECCC
VDGLKIASLVPHIHVVFVTSYDEYAVQAFDQSAIDYLLKPVTDDRLLRCIVKLQRGGPAP
CCCHHHHHHCCEEEEEEEECCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCC
THTALLTSVPEQRDAAPIRWLTVGLRDTTRLVSVDEVLYFQAADKYTEVVTASERHVIRT
HHHHHHHCCCCCCCCCCEEEEEECCCCCHHHEEHHHHHHHHHHHHHHHHHHCCCCHHHHH
PLKEMLPRLDSARFAQVHRGVIVAYAAIDHIERDLLGRQRIHLRGSGDVLPVSRACAGLF
HHHHHHHHCCCHHHHHHHHCHHHHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHH
KQM
HCC
>Mature Secondary Structure 
PTALIADDEPNLSAELAARLGTLWPELEIVGMPRNGVDALAELNAKRPDFAFLDIRMPG
CCCEECCCCCCCHHHHHHHHHCCCCCEEEEECCCCCHHHHHHCCCCCCCEEEEEEECCC
VDGLKIASLVPHIHVVFVTSYDEYAVQAFDQSAIDYLLKPVTDDRLLRCIVKLQRGGPAP
CCCHHHHHHCCEEEEEEEECCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCC
THTALLTSVPEQRDAAPIRWLTVGLRDTTRLVSVDEVLYFQAADKYTEVVTASERHVIRT
HHHHHHHCCCCCCCCCCEEEEEECCCCCHHHEEHHHHHHHHHHHHHHHHHHCCCCHHHHH
PLKEMLPRLDSARFAQVHRGVIVAYAAIDHIERDLLGRQRIHLRGSGDVLPVSRACAGLF
HHHHHHHHCCCHHHHHHHHCHHHHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHH
KQM
HCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA