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The map label for this gene is hrpA [H]

Identifier: 238023720

GI number: 238023720

Start: 289167

End: 290984

Strand: Direct

Name: hrpA [H]

Synonym: bglu_2g02480

Alternate gene names: 238023720

Gene position: 289167-290984 (Clockwise)

Preceding gene: 238023719

Following gene: 238023721

Centisome position: 10.23

GC content: 69.14

Gene sequence:

>1818_bases
ATGAGAGTGAAGCAGCTTGCTGCCGCCGCGTGCCTCGCGGCGGCGACCCTCGCCTGCCTGCCCGGCGCGGCCGACGCGGC
GCCCGTGCGCTGGCGCAGCGCTACCGTCCACGTGCAGCTCGACGGCAAGGATCTGAAGGACGTACTGCGCGATTTCGCGG
CCAGCCAGGGGATCGCGGCCTCGATCGCGCAGAACGTGCAGGGCACCGTGACGGGCCGCTTCGACCTGTCGCCGCAGCGG
TTCCTCGACACGCTCGCCTCGACCTTCGGCTTCATCTGGTTCTACGATGGCAACGTGCTGTCGATCAGCAGCGCGAACGA
CGTGACGCGCCAGGTGCTGCAGCTCGATCACAGCGAGATCGGCGCGCTGCGTTCGACGCTCAGGCAGATCGGTCTCGACG
ATCCGCGCTTCCCGCTCAGCTACGACGCCAGCTCGGGCACCGTGCTGGTGAGCGGCCCCGCGCAGTACGTGCAGATGGTG
GCCGACGTGGCCTCCCGGCTCGATGCCAGCACCGCCCATCGCTCGGGCTCGGTGATCCGCATCTACAAGCTCAAGAACGC
CTGGGCCACCGACCACACCGTGCAGGTGGACGGCAACAGCGTGACCGTGCCGGGCGTGGCCACCATCCTCGGCAACATGT
ACAGCGTGAAAGCGGGGTCGGGCGGCGGCCAGCCGAGCACGGCGCCGAACATGCAGCGCGTGCAGTCGATGAACGACGTG
TCGGGCTCGTCGACCGGCTCGATCGGCGGCGGCAATGGCGGCGGCGTGCAGCCGCCGCCGCTGCCGCCCTCGATGATGGG
CTCGCAGTCGGTGGGCGCCGCGGGGCAGGCGTTCGGCGGCGTCTACGACAACGGTGGCGGCGGCGGTTACACGCGGCGCC
GGCGCGGCGGCGGCTTCGGCGACCTGAACGGCAACGACGTGGCGGTGACCAACGGCAGCGACGGCCTGCCGGTGATCCAG
CCGGACCCGATCACCAACTCGGTGCTGATCCGCGACACGCCGGACCGCGTCGGCCAGTACGAGGACCTGATCCGGCAGCT
CGACGTGCGCCCGCAGATCGTCGAGATCCAGGCGCACATCATCGAGATCGACGACAACACGCTGCAGCAGATCGGCGTGG
ACTGGCGCGCGCACGGCAGCCATCTCGACTTCCAGACCGGCAACGGGCAGGCCGCGCAGAACTCGTTCTCCACCGGCCAG
CTGAACCCGACCTTCGGCTCCGTGCAGCAGGCCGGCCCCGGCAGCACCATCGTCAACGCCACGCCCGCGGGCGCCGCGAT
CTCGGCGGTGGTGGGCGGCGCGGGGCGCTACCTGCTGGCCAGCGTGAACGCGCTGCAGTCCAACTCGAAGGCGAAGATCG
ACGCGACCCCGCTGGTCGCGACGCTCGACAACGTCGAGGCCACCATGGACAACACCACCAAGTTCTACGTGCGGGTGCAG
GGCTACACCTCGGCGGACCTCTACAGCGTGTCCACCGGCGTGTCGCTGCGCGTGCTGCCGCTCATCGTGCACGACCGCGA
CGGCACGCGCATCAAGCTCAGCGTCCACATCGAGAACGGTTCGCTGACCCAGCAGCAGGTGGACAACATTCCGGTGATCA
CGACCAGCCAGATCAACACGCAGGCCTTCGTCGGCGAGGGCGAGAGCCTGCTGATCGCCGGCTTCACCACCGACAAGACC
GCCAACGGCGTGACGGGCGTGCCGTTCCTTTCGAAGATCCCGCTGCTCGGCGCGCTGTTCCGCAACAACAGCGACCAGCA
CAACCACAACGAAACCGTGTTCCTGCTGACGCCGCGCATCATCGACGCGGGCAGCTGA

Upstream 100 bases:

>100_bases
ACGCTGGTGACGGGCTATCGCAAGCAATTCCGCGAAGCGCCCTCCGAGACGCTCGAGCGCTGAACCCCGCTTCTCCCACC
TTTCTTTCCGATTCGACACC

Downstream 100 bases:

>100_bases
GCGGGCCGGTGCAGGCGCGGGCTCGCGGGACGGGGCCGGCCGCGAGGCGCTGCGCGCCGCGGGCCGGCCCCGCGCTCGTT
TCGCATCGCAGGCGGGCGCT

Product: type III secretion outer membrane pore SctC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 605; Mature: 605

Protein sequence:

>605_residues
MRVKQLAAAACLAAATLACLPGAADAAPVRWRSATVHVQLDGKDLKDVLRDFAASQGIAASIAQNVQGTVTGRFDLSPQR
FLDTLASTFGFIWFYDGNVLSISSANDVTRQVLQLDHSEIGALRSTLRQIGLDDPRFPLSYDASSGTVLVSGPAQYVQMV
ADVASRLDASTAHRSGSVIRIYKLKNAWATDHTVQVDGNSVTVPGVATILGNMYSVKAGSGGGQPSTAPNMQRVQSMNDV
SGSSTGSIGGGNGGGVQPPPLPPSMMGSQSVGAAGQAFGGVYDNGGGGGYTRRRRGGGFGDLNGNDVAVTNGSDGLPVIQ
PDPITNSVLIRDTPDRVGQYEDLIRQLDVRPQIVEIQAHIIEIDDNTLQQIGVDWRAHGSHLDFQTGNGQAAQNSFSTGQ
LNPTFGSVQQAGPGSTIVNATPAGAAISAVVGGAGRYLLASVNALQSNSKAKIDATPLVATLDNVEATMDNTTKFYVRVQ
GYTSADLYSVSTGVSLRVLPLIVHDRDGTRIKLSVHIENGSLTQQQVDNIPVITTSQINTQAFVGEGESLLIAGFTTDKT
ANGVTGVPFLSKIPLLGALFRNNSDQHNHNETVFLLTPRIIDAGS

Sequences:

>Translated_605_residues
MRVKQLAAAACLAAATLACLPGAADAAPVRWRSATVHVQLDGKDLKDVLRDFAASQGIAASIAQNVQGTVTGRFDLSPQR
FLDTLASTFGFIWFYDGNVLSISSANDVTRQVLQLDHSEIGALRSTLRQIGLDDPRFPLSYDASSGTVLVSGPAQYVQMV
ADVASRLDASTAHRSGSVIRIYKLKNAWATDHTVQVDGNSVTVPGVATILGNMYSVKAGSGGGQPSTAPNMQRVQSMNDV
SGSSTGSIGGGNGGGVQPPPLPPSMMGSQSVGAAGQAFGGVYDNGGGGGYTRRRRGGGFGDLNGNDVAVTNGSDGLPVIQ
PDPITNSVLIRDTPDRVGQYEDLIRQLDVRPQIVEIQAHIIEIDDNTLQQIGVDWRAHGSHLDFQTGNGQAAQNSFSTGQ
LNPTFGSVQQAGPGSTIVNATPAGAAISAVVGGAGRYLLASVNALQSNSKAKIDATPLVATLDNVEATMDNTTKFYVRVQ
GYTSADLYSVSTGVSLRVLPLIVHDRDGTRIKLSVHIENGSLTQQQVDNIPVITTSQINTQAFVGEGESLLIAGFTTDKT
ANGVTGVPFLSKIPLLGALFRNNSDQHNHNETVFLLTPRIIDAGS
>Mature_605_residues
MRVKQLAAAACLAAATLACLPGAADAAPVRWRSATVHVQLDGKDLKDVLRDFAASQGIAASIAQNVQGTVTGRFDLSPQR
FLDTLASTFGFIWFYDGNVLSISSANDVTRQVLQLDHSEIGALRSTLRQIGLDDPRFPLSYDASSGTVLVSGPAQYVQMV
ADVASRLDASTAHRSGSVIRIYKLKNAWATDHTVQVDGNSVTVPGVATILGNMYSVKAGSGGGQPSTAPNMQRVQSMNDV
SGSSTGSIGGGNGGGVQPPPLPPSMMGSQSVGAAGQAFGGVYDNGGGGGYTRRRRGGGFGDLNGNDVAVTNGSDGLPVIQ
PDPITNSVLIRDTPDRVGQYEDLIRQLDVRPQIVEIQAHIIEIDDNTLQQIGVDWRAHGSHLDFQTGNGQAAQNSFSTGQ
LNPTFGSVQQAGPGSTIVNATPAGAAISAVVGGAGRYLLASVNALQSNSKAKIDATPLVATLDNVEATMDNTTKFYVRVQ
GYTSADLYSVSTGVSLRVLPLIVHDRDGTRIKLSVHIENGSLTQQQVDNIPVITTSQINTQAFVGEGESLLIAGFTTDKT
ANGVTGVPFLSKIPLLGALFRNNSDQHNHNETVFLLTPRIIDAGS

Specific function: Involved in the secretion of a proteinaceous elicitor of the hypersensitivity response in plants [H]

COG id: COG1450

COG function: function code NU; Type II secretory pathway, component PulD

Gene ontology:

Cell location: Cell outer membrane; Peripheral membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the GSP D family [H]

Homologues:

Organism=Escherichia coli, GI1789793, Length=289, Percent_Identity=27.681660899654, Blast_Score=93, Evalue=5e-20,
Organism=Escherichia coli, GI87082242, Length=297, Percent_Identity=26.5993265993266, Blast_Score=74, Evalue=3e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005644
- InterPro:   IPR004846
- InterPro:   IPR004845
- InterPro:   IPR003522 [H]

Pfam domain/function: PF00263 Secretin; PF03958 Secretin_N [H]

EC number: NA

Molecular weight: Translated: 63274; Mature: 63274

Theoretical pI: Translated: 6.13; Mature: 6.13

Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS00875 T2SP_D

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRVKQLAAAACLAAATLACLPGAADAAPVRWRSATVHVQLDGKDLKDVLRDFAASQGIAA
CCHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEEEEEECCHHHHHHHHHHHHCCCHHH
SIAQNVQGTVTGRFDLSPQRFLDTLASTFGFIWFYDGNVLSISSANDVTRQVLQLDHSEI
HHHHCCCEEEEEEECCCHHHHHHHHHHHCCEEEEECCCEEEECCCHHHHHHHHHHCHHHH
GALRSTLRQIGLDDPRFPLSYDASSGTVLVSGPAQYVQMVADVASRLDASTAHRSGSVIR
HHHHHHHHHHCCCCCCCCEEECCCCCEEEEECHHHHHHHHHHHHHHHCCHHHHCCCCEEE
IYKLKNAWATDHTVQVDGNSVTVPGVATILGNMYSVKAGSGGGQPSTAPNMQRVQSMNDV
EEEECCCCCCCCEEEECCCEEECCHHHHHHCCCEEEECCCCCCCCCCCCCHHHHHHHHCC
SGSSTGSIGGGNGGGVQPPPLPPSMMGSQSVGAAGQAFGGVYDNGGGGGYTRRRRGGGFG
CCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCHHCCCEEECCCCCCCCCCCCCCCCC
DLNGNDVAVTNGSDGLPVIQPDPITNSVLIRDTPDRVGQYEDLIRQLDVRPQIVEIQAHI
CCCCCEEEEECCCCCCCEECCCCCCCCEEEECCHHHHHHHHHHHHHHCCCCEEEEEEEEE
IEIDDNTLQQIGVDWRAHGSHLDFQTGNGQAAQNSFSTGQLNPTFGSVQQAGPGSTIVNA
EEECCCHHHHHCCCEEECCCEEEEECCCCCCCCCCCCCCCCCCCCCCHHCCCCCCEEEEC
TPAGAAISAVVGGAGRYLLASVNALQSNSKAKIDATPLVATLDNVEATMDNTTKFYVRVQ
CCCCHHHHHHHCCCCCEEEEEHHHHCCCCCCEEECCCEEEECCCCHHCCCCCEEEEEEEE
GYTSADLYSVSTGVSLRVLPLIVHDRDGTRIKLSVHIENGSLTQQQVDNIPVITTSQINT
CCCCCCEEEECCCCEEEEEEEEEECCCCCEEEEEEEECCCCCCHHHHCCCCEEEECCCCC
QAFVGEGESLLIAGFTTDKTANGVTGVPFLSKIPLLGALFRNNSDQHNHNETVFLLTPRI
EEEECCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCE
IDAGS
ECCCC
>Mature Secondary Structure
MRVKQLAAAACLAAATLACLPGAADAAPVRWRSATVHVQLDGKDLKDVLRDFAASQGIAA
CCHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEEEEEECCHHHHHHHHHHHHCCCHHH
SIAQNVQGTVTGRFDLSPQRFLDTLASTFGFIWFYDGNVLSISSANDVTRQVLQLDHSEI
HHHHCCCEEEEEEECCCHHHHHHHHHHHCCEEEEECCCEEEECCCHHHHHHHHHHCHHHH
GALRSTLRQIGLDDPRFPLSYDASSGTVLVSGPAQYVQMVADVASRLDASTAHRSGSVIR
HHHHHHHHHHCCCCCCCCEEECCCCCEEEEECHHHHHHHHHHHHHHHCCHHHHCCCCEEE
IYKLKNAWATDHTVQVDGNSVTVPGVATILGNMYSVKAGSGGGQPSTAPNMQRVQSMNDV
EEEECCCCCCCCEEEECCCEEECCHHHHHHCCCEEEECCCCCCCCCCCCCHHHHHHHHCC
SGSSTGSIGGGNGGGVQPPPLPPSMMGSQSVGAAGQAFGGVYDNGGGGGYTRRRRGGGFG
CCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCHHCCCEEECCCCCCCCCCCCCCCCC
DLNGNDVAVTNGSDGLPVIQPDPITNSVLIRDTPDRVGQYEDLIRQLDVRPQIVEIQAHI
CCCCCEEEEECCCCCCCEECCCCCCCCEEEECCHHHHHHHHHHHHHHCCCCEEEEEEEEE
IEIDDNTLQQIGVDWRAHGSHLDFQTGNGQAAQNSFSTGQLNPTFGSVQQAGPGSTIVNA
EEECCCHHHHHCCCEEECCCEEEEECCCCCCCCCCCCCCCCCCCCCCHHCCCCCCEEEEC
TPAGAAISAVVGGAGRYLLASVNALQSNSKAKIDATPLVATLDNVEATMDNTTKFYVRVQ
CCCCHHHHHHHCCCCCEEEEEHHHHCCCCCCEEECCCEEEECCCCHHCCCCCEEEEEEEE
GYTSADLYSVSTGVSLRVLPLIVHDRDGTRIKLSVHIENGSLTQQQVDNIPVITTSQINT
CCCCCCEEEECCCCEEEEEEEEEECCCCCEEEEEEEECCCCCCHHHHCCCCEEEECCCCC
QAFVGEGESLLIAGFTTDKTANGVTGVPFLSKIPLLGALFRNNSDQHNHNETVFLLTPRI
EEEECCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCE
IDAGS
ECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 1472716; 7623665; 11823852 [H]