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The map label for this gene is hrpB [H]

Identifier: 238023719

GI number: 238023719

Start: 287687

End: 289129

Strand: Direct

Name: hrpB [H]

Synonym: bglu_2g02470

Alternate gene names: 238023719

Gene position: 287687-289129 (Clockwise)

Preceding gene: 238023718

Following gene: 238023720

Centisome position: 10.18

GC content: 72.35

Gene sequence:

>1443_bases
ATGTTTTCGATGCTCTATTTTCCGGTGGTGTCCGCGCTGGCCGCGTCCGACGAGGATGCCGGCTCCGATGTCGCGGCCCG
CGCGGTCGATTCGATCCTCGACGGCGAATTCGCCGCCGCGGTGCAGCAGTCGGGCCGCCGTCTGGACGAGTCGGCCGCGG
GCGTGAGCGGGCGGGATCTGCAGTGGCACGCCGATCTGCAACTGGTGCTCGGCTTCGACGCCGAGGCCGAGGATGCCTAC
CGCCGCGCGCAGCGCCGGATGCGTGCCTCGAAGGCCGAGATTCGCGTCGCCACCTGCCGCAACGCCGCGTGGCAGGCGCT
GTTCCGCCATCGCATCGGTACCGCGCTGGCCTGTTTCGCGCGCGCCGCCGAAGAGACCGAGGCCCACCCGGCGCGCCGCA
TCGAGGCACGCATCGGCATCGCCTGCGCGCTGCACGAGCTGGGCCGCACGCGTGAGGCGCTCGACGCGCTCGCCGAAGTG
GTGCCCACCAGCACGCGCTGGCGCGAGCTGGTCACGGCGCTGCGCTTCGACCTGATCGCGCAGCACGAGCTGCGCTGCGC
CAATGCCCTGCACGATCACGTCTACTGGCGCTCGGCCGCGCTGGCGAGTCCGGCCGCCTACGTGGCCGCGCCGCGCATCG
GCTTCGCCGAGGCGCTGCAGGCCGCCGCTGCCGGCGTGCGCGCGCCGCTGCTGGCCGCGCGCGTGGCCTACCTGCGCGCC
CTGCGCAGCGTGGCGGGCGGCGATCGCGACGCGATCGCCAAGGTCTGCGCCTATCTCGAACGGATTCGCGAGCAGGGCTT
CGCCGACTACCAGCGCGCGGTGCGCCTGGAGATCGCGCTGGCCACCTTCGTCGGCGACGCGCCGCATGTCGCGCAGAGCA
TCGTCGAGCCGCTGCACCAGGGCGTGCGCGGCTCCGACACCGGCCATCGCCAGCTCGAATATCTCTATTGCTCGGCCAAG
CTGCGCGAGACCCAGGGCCGCGCCCAGGAATCGCTGCAGTGGTACAGCCGCTACGCGCTGGTGGCGATGCAGTGCCTGCG
CGAGGATTCGCACGTGCGCACCCCGGCGCTCGACCGCCAGCCGAAGGCCGCGCCCGACGACGTCAGCGCGCGGCTGCCGG
CGAAGTACCGGCGCGCCTATCGCTACGTGCTCGACAACCTCGATCGCGCCGACCTGTCGGTGCGCGAGATCGCCACCCAG
ATCGGCGTGACCGAGCGGGCGCTGCAAAGCGCGTTCAAGAGCTGCCTGGGCCTCTCGCCGAGCGAGCTGATCCGCACGCG
CCGCATGGAGCGCATCCGCGAGGCGCTGATCGACCACGCCGACGCGGGTGACCAGCGCGTGCTCGAGACCGCGCGCCGCT
GGGGCGTGCAAAGCCGCTCGACGCTGGTGACGGGCTATCGCAAGCAATTCCGCGAAGCGCCCTCCGAGACGCTCGAGCGC
TGA

Upstream 100 bases:

>100_bases
ATTGCTCAGCCAAACTGAGAGTTCGAAAACGAGGCCCCGACTACATTGCTCGAACTGCGCCGCGATCCGGTGCCCAGGCA
ACAGCAAGGAGAGTCGCCTC

Downstream 100 bases:

>100_bases
ACCCCGCTTCTCCCACCTTTCTTTCCGATTCGACACCATGAGAGTGAAGCAGCTTGCTGCCGCCGCGTGCCTCGCGGCGG
CGACCCTCGCCTGCCTGCCC

Product: AraC family transcription regulator of pathogenicity genes

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 480; Mature: 480

Protein sequence:

>480_residues
MFSMLYFPVVSALAASDEDAGSDVAARAVDSILDGEFAAAVQQSGRRLDESAAGVSGRDLQWHADLQLVLGFDAEAEDAY
RRAQRRMRASKAEIRVATCRNAAWQALFRHRIGTALACFARAAEETEAHPARRIEARIGIACALHELGRTREALDALAEV
VPTSTRWRELVTALRFDLIAQHELRCANALHDHVYWRSAALASPAAYVAAPRIGFAEALQAAAAGVRAPLLAARVAYLRA
LRSVAGGDRDAIAKVCAYLERIREQGFADYQRAVRLEIALATFVGDAPHVAQSIVEPLHQGVRGSDTGHRQLEYLYCSAK
LRETQGRAQESLQWYSRYALVAMQCLREDSHVRTPALDRQPKAAPDDVSARLPAKYRRAYRYVLDNLDRADLSVREIATQ
IGVTERALQSAFKSCLGLSPSELIRTRRMERIREALIDHADAGDQRVLETARRWGVQSRSTLVTGYRKQFREAPSETLER

Sequences:

>Translated_480_residues
MFSMLYFPVVSALAASDEDAGSDVAARAVDSILDGEFAAAVQQSGRRLDESAAGVSGRDLQWHADLQLVLGFDAEAEDAY
RRAQRRMRASKAEIRVATCRNAAWQALFRHRIGTALACFARAAEETEAHPARRIEARIGIACALHELGRTREALDALAEV
VPTSTRWRELVTALRFDLIAQHELRCANALHDHVYWRSAALASPAAYVAAPRIGFAEALQAAAAGVRAPLLAARVAYLRA
LRSVAGGDRDAIAKVCAYLERIREQGFADYQRAVRLEIALATFVGDAPHVAQSIVEPLHQGVRGSDTGHRQLEYLYCSAK
LRETQGRAQESLQWYSRYALVAMQCLREDSHVRTPALDRQPKAAPDDVSARLPAKYRRAYRYVLDNLDRADLSVREIATQ
IGVTERALQSAFKSCLGLSPSELIRTRRMERIREALIDHADAGDQRVLETARRWGVQSRSTLVTGYRKQFREAPSETLER
>Mature_480_residues
MFSMLYFPVVSALAASDEDAGSDVAARAVDSILDGEFAAAVQQSGRRLDESAAGVSGRDLQWHADLQLVLGFDAEAEDAY
RRAQRRMRASKAEIRVATCRNAAWQALFRHRIGTALACFARAAEETEAHPARRIEARIGIACALHELGRTREALDALAEV
VPTSTRWRELVTALRFDLIAQHELRCANALHDHVYWRSAALASPAAYVAAPRIGFAEALQAAAAGVRAPLLAARVAYLRA
LRSVAGGDRDAIAKVCAYLERIREQGFADYQRAVRLEIALATFVGDAPHVAQSIVEPLHQGVRGSDTGHRQLEYLYCSAK
LRETQGRAQESLQWYSRYALVAMQCLREDSHVRTPALDRQPKAAPDDVSARLPAKYRRAYRYVLDNLDRADLSVREIATQ
IGVTERALQSAFKSCLGLSPSELIRTRRMERIREALIDHADAGDQRVLETARRWGVQSRSTLVTGYRKQFREAPSETLER

Specific function: Positive regulation of hypersensitive response genes involved in plant pathogenicity and partly of its own synthesis in minimal medium [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018062
- InterPro:   IPR018060 [H]

Pfam domain/function: PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 53273; Mature: 53273

Theoretical pI: Translated: 8.85; Mature: 8.85

Prosite motif: PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFSMLYFPVVSALAASDEDAGSDVAARAVDSILDGEFAAAVQQSGRRLDESAAGVSGRDL
CCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCHHHHHHHHHHCCHHHHHHCCCCCCCE
QWHADLQLVLGFDAEAEDAYRRAQRRMRASKAEIRVATCRNAAWQALFRHRIGTALACFA
EEECCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RAAEETEAHPARRIEARIGIACALHELGRTREALDALAEVVPTSTRWRELVTALRFDLIA
HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
QHELRCANALHDHVYWRSAALASPAAYVAAPRIGFAEALQAAAAGVRAPLLAARVAYLRA
HHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
LRSVAGGDRDAIAKVCAYLERIREQGFADYQRAVRLEIALATFVGDAPHVAQSIVEPLHQ
HHHHHCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHC
GVRGSDTGHRQLEYLYCSAKLRETQGRAQESLQWYSRYALVAMQCLREDSHVRTPALDRQ
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
PKAAPDDVSARLPAKYRRAYRYVLDNLDRADLSVREIATQIGVTERALQSAFKSCLGLSP
CCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHCHHHHHHHHHHHHHHCCCH
SELIRTRRMERIREALIDHADAGDQRVLETARRWGVQSRSTLVTGYRKQFREAPSETLER
HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCHHHHHCC
>Mature Secondary Structure
MFSMLYFPVVSALAASDEDAGSDVAARAVDSILDGEFAAAVQQSGRRLDESAAGVSGRDL
CCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCHHHHHHHHHHCCHHHHHHCCCCCCCE
QWHADLQLVLGFDAEAEDAYRRAQRRMRASKAEIRVATCRNAAWQALFRHRIGTALACFA
EEECCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RAAEETEAHPARRIEARIGIACALHELGRTREALDALAEVVPTSTRWRELVTALRFDLIA
HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
QHELRCANALHDHVYWRSAALASPAAYVAAPRIGFAEALQAAAAGVRAPLLAARVAYLRA
HHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
LRSVAGGDRDAIAKVCAYLERIREQGFADYQRAVRLEIALATFVGDAPHVAQSIVEPLHQ
HHHHHCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHC
GVRGSDTGHRQLEYLYCSAKLRETQGRAQESLQWYSRYALVAMQCLREDSHVRTPALDRQ
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
PKAAPDDVSARLPAKYRRAYRYVLDNLDRADLSVREIATQIGVTERALQSAFKSCLGLSP
CCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHCHHHHHHHHHHHHHHCCCH
SELIRTRRMERIREALIDHADAGDQRVLETARRWGVQSRSTLVTGYRKQFREAPSETLER
HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 1479894; 11823852 [H]