| Definition | Burkholderia glumae BGR1 chromosome chromosome 2, complete sequence. |
|---|---|
| Accession | NC_012721 |
| Length | 2,827,333 |
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The map label for this gene is 238023721
Identifier: 238023721
GI number: 238023721
Start: 291168
End: 292007
Strand: Direct
Name: 238023721
Synonym: bglu_2g02490
Alternate gene names: NA
Gene position: 291168-292007 (Clockwise)
Preceding gene: 238023720
Following gene: 238023724
Centisome position: 10.3
GC content: 71.43
Gene sequence:
>840_bases ATGTCGCTCATGATTTCCAGCCCCAGCCAGCCTTCGGGCCTCGACGCGCTGTCGTCGAGCGATCCGCTGGGCGGCGCGAA CAGCGCCAGCAGCACGCAGATGAACCAGATCGCGCAGATCATCGCGCAACTGCTCCAGGACATCGCGCAGATGTCCCAGA TCATTCAGATGCTCAAGCAGGCCGCGCAGCAGGGCGCCGGCTCCGGGCCCGGCGGGGGCGGTGCCGCAGGCGCAGGCGGT TTCGCGCCGGCGCAGAACCTGGCGGCCGCGCCGACGGGCGGCGGCGGTGGCGGCAGTATGCCGGCAGCGGGCGGCCCGGG CGCCGGCGCGCCGGTGGATGCCTCGCCTGGCACCACCGGCGCCGGCAGCGGCACGCCCGTCACGAGCCTCGGCGGCGACA ACGCGAACCAGATCGCCAGCGCCCTGAAGGACGCGGGCTACAACGACAACGCGATCGCCGGCATTCTCGGCAATCTGCAG CAGGAAAGCGGCCTGCAGCCCGACATCAACCAGGGCGGCCAGACGGGCGGCCCGTCGTCGAACAACGCCGACGACAACGC GCACGGCTACGGCCTCGCGCAGTGGGGCGGCTCGCGCGAGGAGGCGCTCGAGCAGTTCGCGCAGCAGCAGGGCAAGCCGG TCACCGACCTCGGCACGCAGGTGCAGTTCATGATCAAGGAGGCCAACGACATGCCGGGGCTGAAGGACGCGATGAACAAC GCGGGCTCCCCGCAGGCTGCCGCGGCGCTCTGGTGCCGGCAGTTCGAGGGCGCCACCGATCCGCAAATGCAGAACCGCAA CCAGTACGCCGCGCAGTTCGCGCAGCAGCTGGGCGCCTGA
Upstream 100 bases:
>100_bases CATCGCAGGCGGGCGCTTCGTGCCGCGCGCGGGCCGCTTGCGGGGGCCTCCTTATAGTGCGATGTGTCGGCAGATCCGCC GTTCCAACCAGGAGTCGCCC
Downstream 100 bases:
>100_bases GTCTCACCCGGTCCGGCGCGCGGGCGCCGGCATCACCGCCGGCGCCCGCGTAAACGACAACATCCCGCCGGCGGCGGGAT GTTGCGGATGGCGGGACGGC
Product: type III effector protein HrpW
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 279; Mature: 278
Protein sequence:
>279_residues MSLMISSPSQPSGLDALSSSDPLGGANSASSTQMNQIAQIIAQLLQDIAQMSQIIQMLKQAAQQGAGSGPGGGGAAGAGG FAPAQNLAAAPTGGGGGGSMPAAGGPGAGAPVDASPGTTGAGSGTPVTSLGGDNANQIASALKDAGYNDNAIAGILGNLQ QESGLQPDINQGGQTGGPSSNNADDNAHGYGLAQWGGSREEALEQFAQQQGKPVTDLGTQVQFMIKEANDMPGLKDAMNN AGSPQAAAALWCRQFEGATDPQMQNRNQYAAQFAQQLGA
Sequences:
>Translated_279_residues MSLMISSPSQPSGLDALSSSDPLGGANSASSTQMNQIAQIIAQLLQDIAQMSQIIQMLKQAAQQGAGSGPGGGGAAGAGG FAPAQNLAAAPTGGGGGGSMPAAGGPGAGAPVDASPGTTGAGSGTPVTSLGGDNANQIASALKDAGYNDNAIAGILGNLQ QESGLQPDINQGGQTGGPSSNNADDNAHGYGLAQWGGSREEALEQFAQQQGKPVTDLGTQVQFMIKEANDMPGLKDAMNN AGSPQAAAALWCRQFEGATDPQMQNRNQYAAQFAQQLGA >Mature_278_residues SLMISSPSQPSGLDALSSSDPLGGANSASSTQMNQIAQIIAQLLQDIAQMSQIIQMLKQAAQQGAGSGPGGGGAAGAGGF APAQNLAAAPTGGGGGGSMPAAGGPGAGAPVDASPGTTGAGSGTPVTSLGGDNANQIASALKDAGYNDNAIAGILGNLQQ ESGLQPDINQGGQTGGPSSNNADDNAHGYGLAQWGGSREEALEQFAQQQGKPVTDLGTQVQFMIKEANDMPGLKDAMNNA GSPQAAAALWCRQFEGATDPQMQNRNQYAAQFAQQLGA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 27480; Mature: 27349
Theoretical pI: Translated: 3.90; Mature: 3.90
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 3.6 %Met (Translated Protein) 3.9 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 3.2 %Met (Mature Protein) 3.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSLMISSPSQPSGLDALSSSDPLGGANSASSTQMNQIAQIIAQLLQDIAQMSQIIQMLKQ CCEECCCCCCCCCCCHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH AAQQGAGSGPGGGGAAGAGGFAPAQNLAAAPTGGGGGGSMPAAGGPGAGAPVDASPGTTG HHHHCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC AGSGTPVTSLGGDNANQIASALKDAGYNDNAIAGILGNLQQESGLQPDINQGGQTGGPSS CCCCCCCCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC NNADDNAHGYGLAQWGGSREEALEQFAQQQGKPVTDLGTQVQFMIKEANDMPGLKDAMNN CCCCCCCCCCCHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHHHCC AGSPQAAAALWCRQFEGATDPQMQNRNQYAAQFAQQLGA CCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure SLMISSPSQPSGLDALSSSDPLGGANSASSTQMNQIAQIIAQLLQDIAQMSQIIQMLKQ CEECCCCCCCCCCCHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH AAQQGAGSGPGGGGAAGAGGFAPAQNLAAAPTGGGGGGSMPAAGGPGAGAPVDASPGTTG HHHHCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC AGSGTPVTSLGGDNANQIASALKDAGYNDNAIAGILGNLQQESGLQPDINQGGQTGGPSS CCCCCCCCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC NNADDNAHGYGLAQWGGSREEALEQFAQQQGKPVTDLGTQVQFMIKEANDMPGLKDAMNN CCCCCCCCCCCHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHHHCC AGSPQAAAALWCRQFEGATDPQMQNRNQYAAQFAQQLGA CCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA