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The map label for this gene is ydfH [H]

Identifier: 238023669

GI number: 238023669

Start: 218117

End: 218848

Strand: Direct

Name: ydfH [H]

Synonym: bglu_2g01900

Alternate gene names: 238023669

Gene position: 218117-218848 (Clockwise)

Preceding gene: 238023663

Following gene: 238023670

Centisome position: 7.71

GC content: 69.95

Gene sequence:

>732_bases
ATGACCGACATGGCCCCCTCGCTGCAGGAAAACATCGCGCTCGCAGCCCTGCGCGGCTTCGAGGCGAACGCCGACCAGCC
CTACCGCCCCCAGGTTCACCGTTTTTTGCGCGACGCGATCGTGCGCGGCGCGTTGCCGCCGCATACGAGCCTCTCCGAGG
CGGCCATCGCCGAAGCGTTCGAGGTCAGCCGCACGCCGGTGCGCGAGGCGCTCGCGCAGCTGGCCGACGAGCATCTGGTG
AACATCATCCGCAAGGTCGGCACGATGGTCGCGCCGATCTCGGTCTCGCAGCTGGAGGAAGGGCGCTTCGCGCGCAGCAC
GCTCGAATGCGCCAACCACGTGCAGCTCGCGCAGACCATCACGCCGGCACAGCTGACCGAATTCGGCGCGATCGTCGCGG
CGCAGCGCGAGGCCGTGGAGGCCGGCGACGTGGAGCGCTTCTTCGATCTCGACGAGCGCATGCACCGGCGGCTGTTCGAG
TTCGCGGGCCGTGGCCACGTGTGGGAGATGCTTCAGCCGATGAAGCGGCAATTCGACCGCGTGCGCTGGCTGCTGCTCGA
CCGCGTCGCCGATCACGCGCGCCGCGCGCTGCACGAGCACGAGCTGATCCTCGCCCAACTGGCGTCGCGCAACGTCGCGT
TGCTGGGCGCCACGGTGGCCAGCCACATCGACCGCGTCGGCTCGCACCTGCCCGAGGTGCGCGGGCGGGTGCCCACGCAT
TTCACCGACTGA

Upstream 100 bases:

>100_bases
ATAGGCGTCATGTATCGCCGATTTTATCGGTGTAAACGCTAGGAATTGCCCGTATCATCGCAGTGCTACCATGGTACATA
TCATCGCACGCCCATCCGTT

Downstream 100 bases:

>100_bases
CCCGGGCGCCACACGAACCGCCCGCCGGCCGCCGCGCCCCGGGCTGCATGCAGAGGGAGGGAAACAGTGAAGATCGAACG
GTTGCAGACCATCGTGACCT

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 243; Mature: 242

Protein sequence:

>243_residues
MTDMAPSLQENIALAALRGFEANADQPYRPQVHRFLRDAIVRGALPPHTSLSEAAIAEAFEVSRTPVREALAQLADEHLV
NIIRKVGTMVAPISVSQLEEGRFARSTLECANHVQLAQTITPAQLTEFGAIVAAQREAVEAGDVERFFDLDERMHRRLFE
FAGRGHVWEMLQPMKRQFDRVRWLLLDRVADHARRALHEHELILAQLASRNVALLGATVASHIDRVGSHLPEVRGRVPTH
FTD

Sequences:

>Translated_243_residues
MTDMAPSLQENIALAALRGFEANADQPYRPQVHRFLRDAIVRGALPPHTSLSEAAIAEAFEVSRTPVREALAQLADEHLV
NIIRKVGTMVAPISVSQLEEGRFARSTLECANHVQLAQTITPAQLTEFGAIVAAQREAVEAGDVERFFDLDERMHRRLFE
FAGRGHVWEMLQPMKRQFDRVRWLLLDRVADHARRALHEHELILAQLASRNVALLGATVASHIDRVGSHLPEVRGRVPTH
FTD
>Mature_242_residues
TDMAPSLQENIALAALRGFEANADQPYRPQVHRFLRDAIVRGALPPHTSLSEAAIAEAFEVSRTPVREALAQLADEHLVN
IIRKVGTMVAPISVSQLEEGRFARSTLECANHVQLAQTITPAQLTEFGAIVAAQREAVEAGDVERFFDLDERMHRRLFEF
AGRGHVWEMLQPMKRQFDRVRWLLLDRVADHARRALHEHELILAQLASRNVALLGATVASHIDRVGSHLPEVRGRVPTHF
TD

Specific function: Unknown

COG id: COG1802

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787821, Length=221, Percent_Identity=31.2217194570136, Blast_Score=115, Evalue=2e-27,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011711
- InterPro:   IPR000524
- InterPro:   IPR011991 [H]

Pfam domain/function: PF07729 FCD; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 27249; Mature: 27118

Theoretical pI: Translated: 6.80; Mature: 6.80

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTDMAPSLQENIALAALRGFEANADQPYRPQVHRFLRDAIVRGALPPHTSLSEAAIAEAF
CCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHH
EVSRTPVREALAQLADEHLVNIIRKVGTMVAPISVSQLEEGRFARSTLECANHVQLAQTI
HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCHHHHHHHHHHHHHHHHHHC
TPAQLTEFGAIVAAQREAVEAGDVERFFDLDERMHRRLFEFAGRGHVWEMLQPMKRQFDR
CHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
VRWLLLDRVADHARRALHEHELILAQLASRNVALLGATVASHIDRVGSHLPEVRGRVPTH
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
FTD
CCC
>Mature Secondary Structure 
TDMAPSLQENIALAALRGFEANADQPYRPQVHRFLRDAIVRGALPPHTSLSEAAIAEAF
CCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHH
EVSRTPVREALAQLADEHLVNIIRKVGTMVAPISVSQLEEGRFARSTLECANHVQLAQTI
HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCHHHHHHHHHHHHHHHHHHC
TPAQLTEFGAIVAAQREAVEAGDVERFFDLDERMHRRLFEFAGRGHVWEMLQPMKRQFDR
CHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
VRWLLLDRVADHARRALHEHELILAQLASRNVALLGATVASHIDRVGSHLPEVRGRVPTH
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
FTD
CCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]