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The map label for this gene is syrM1 [H]

Identifier: 238023613

GI number: 238023613

Start: 129902

End: 130858

Strand: Direct

Name: syrM1 [H]

Synonym: bglu_2g01180

Alternate gene names: 238023613

Gene position: 129902-130858 (Clockwise)

Preceding gene: 238023612

Following gene: 238023614

Centisome position: 4.59

GC content: 62.28

Gene sequence:

>957_bases
GTGCTTAACAGTAACGTATTACGCCAGCTCGATCTTCAGGACGTGATGGTATTTCTGTACTTGTACGAGCACAAGAGCGC
TCGCCGTACCGCCGAGGTCATGAGCATCAGCCAGCCCACGGTCAGCTATTGCCTGAAGCGGTTGCGCAATTGCTTTCACG
ACGTGCTGTTCGACGTTGACCACGGCAGCCTCGTCGCGACGCCCAAGGCCGAGGCTATCGAGCCCTATCTGCGAAACGTG
ATCGATGCGGTGAACCACTGCGCCGACATGGATGACGATCAGGTGACCGCAACGACACGCCGGGTGATGCGCGTATGCGC
GCCGGAGTACTTCGAGTTGGTGCTGCTGCCGGGTGTGCTCGAGTCGTTCATGAAGCGTGGCCGCGAAACCTCGCTGATCG
TTGACCGCCTCGGCCGCGACCTCCCGGTAGAACGGTTGCTGGCCGGAGAGATCGACTTCGCGATCGGCTTCGGCCCCGGC
TATCACCGCCTGCACCCCGACCTGCAATGGGAGTCGGTCCTCTCCGACACCTTCGTATGCCTGACCGCATCGCGCAAGCT
CGCGCCGTCGACGCGCGTTTCGCTCGACGAATTCTGCGACATGGACCACGTGTTCCCTACGCCGTGGGTATCCGAGCGCA
ACATGATCGACGGCTGGCTCGAAAAGCTCGGCCGCTCGCGCAGTATCGTTGCGCGCGCCAACACGTATCAGGCCAGCCTG
AACATCGTCGCTCGGCTGCCGGTTTCGCTGACGTTGCCGCGGCGCCTGCTGCAGTATCTGTCGATCCCTGCGACTGTTCA
GGTCTGCGATGTACCGCTCGGCTTTCCGACCTTCACGCTGGACGTGGTCTGGTCGATGTCGATGGAAAGGAACCCCGACC
TCCGCACCCTGCGCAGCTTGTTCAAGGACCTCGCGAACGCCAATGCGTTCGAGCCGGGAGACGTGCCTCGCGCCTAG

Upstream 100 bases:

>100_bases
GGAGATGAGGGGAGCGAATGTGACATGCCGCGCGTCGATGAGTTTAAGATGGGCACTGAAAAGATGATACCGGCGATAAC
AAAAATGATAAGGATATATC

Downstream 100 bases:

>100_bases
CCGCGAGCGGCCTGCCCTGGCCGATCACCGCGGCTGCCGGTTCATTGCCGCGGAGGAAGCAAAGCGGGGTTTCCTTGCAG
GACCCTGAACAAAATTTGCA

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: Symbiotic regulator homolog 1 [H]

Number of amino acids: Translated: 318; Mature: 318

Protein sequence:

>318_residues
MLNSNVLRQLDLQDVMVFLYLYEHKSARRTAEVMSISQPTVSYCLKRLRNCFHDVLFDVDHGSLVATPKAEAIEPYLRNV
IDAVNHCADMDDDQVTATTRRVMRVCAPEYFELVLLPGVLESFMKRGRETSLIVDRLGRDLPVERLLAGEIDFAIGFGPG
YHRLHPDLQWESVLSDTFVCLTASRKLAPSTRVSLDEFCDMDHVFPTPWVSERNMIDGWLEKLGRSRSIVARANTYQASL
NIVARLPVSLTLPRRLLQYLSIPATVQVCDVPLGFPTFTLDVVWSMSMERNPDLRTLRSLFKDLANANAFEPGDVPRA

Sequences:

>Translated_318_residues
MLNSNVLRQLDLQDVMVFLYLYEHKSARRTAEVMSISQPTVSYCLKRLRNCFHDVLFDVDHGSLVATPKAEAIEPYLRNV
IDAVNHCADMDDDQVTATTRRVMRVCAPEYFELVLLPGVLESFMKRGRETSLIVDRLGRDLPVERLLAGEIDFAIGFGPG
YHRLHPDLQWESVLSDTFVCLTASRKLAPSTRVSLDEFCDMDHVFPTPWVSERNMIDGWLEKLGRSRSIVARANTYQASL
NIVARLPVSLTLPRRLLQYLSIPATVQVCDVPLGFPTFTLDVVWSMSMERNPDLRTLRSLFKDLANANAFEPGDVPRA
>Mature_318_residues
MLNSNVLRQLDLQDVMVFLYLYEHKSARRTAEVMSISQPTVSYCLKRLRNCFHDVLFDVDHGSLVATPKAEAIEPYLRNV
IDAVNHCADMDDDQVTATTRRVMRVCAPEYFELVLLPGVLESFMKRGRETSLIVDRLGRDLPVERLLAGEIDFAIGFGPG
YHRLHPDLQWESVLSDTFVCLTASRKLAPSTRVSLDEFCDMDHVFPTPWVSERNMIDGWLEKLGRSRSIVARANTYQASL
NIVARLPVSLTLPRRLLQYLSIPATVQVCDVPLGFPTFTLDVVWSMSMERNPDLRTLRSLFKDLANANAFEPGDVPRA

Specific function: Transcriptional activator that regulates the expression of genes involved in symbiosis. Among other targets it acts on the nolWBTUV operon [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI157672245, Length=237, Percent_Identity=24.4725738396624, Blast_Score=68, Evalue=7e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 36074; Mature: 36074

Theoretical pI: Translated: 6.17; Mature: 6.17

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
5.3 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
5.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLNSNVLRQLDLQDVMVFLYLYEHKSARRTAEVMSISQPTVSYCLKRLRNCFHDVLFDVD
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHEECC
HGSLVATPKAEAIEPYLRNVIDAVNHCADMDDDQVTATTRRVMRVCAPEYFELVLLPGVL
CCCEEECCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHH
ESFMKRGRETSLIVDRLGRDLPVERLLAGEIDFAIGFGPGYHRLHPDLQWESVLSDTFVC
HHHHHCCCCHHHHHHHCCCCCCHHHHHHCCCCEEEECCCCHHHCCCCCHHHHHHHHHHEE
LTASRKLAPSTRVSLDEFCDMDHVFPTPWVSERNMIDGWLEKLGRSRSIVARANTYQASL
EECCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEECCHHHHHH
NIVARLPVSLTLPRRLLQYLSIPATVQVCDVPLGFPTFTLDVVWSMSMERNPDLRTLRSL
HEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHCCCCCCCHHHHHHH
FKDLANANAFEPGDVPRA
HHHHHCCCCCCCCCCCCC
>Mature Secondary Structure
MLNSNVLRQLDLQDVMVFLYLYEHKSARRTAEVMSISQPTVSYCLKRLRNCFHDVLFDVD
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHEECC
HGSLVATPKAEAIEPYLRNVIDAVNHCADMDDDQVTATTRRVMRVCAPEYFELVLLPGVL
CCCEEECCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHH
ESFMKRGRETSLIVDRLGRDLPVERLLAGEIDFAIGFGPGYHRLHPDLQWESVLSDTFVC
HHHHHCCCCHHHHHHHCCCCCCHHHHHHCCCCEEEECCCCHHHCCCCCHHHHHHHHHHEE
LTASRKLAPSTRVSLDEFCDMDHVFPTPWVSERNMIDGWLEKLGRSRSIVARANTYQASL
EECCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEECCHHHHHH
NIVARLPVSLTLPRRLLQYLSIPATVQVCDVPLGFPTFTLDVVWSMSMERNPDLRTLRSL
HEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHCCCCCCCHHHHHHH
FKDLANANAFEPGDVPRA
HHHHHCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]