| Definition | Burkholderia pseudomallei MSHR346 chromosome I, complete genome. |
|---|---|
| Accession | NC_012695 |
| Length | 4,098,576 |
Click here to switch to the map view.
The map label for this gene is yicG [C]
Identifier: 237813409
GI number: 237813409
Start: 3079906
End: 3080526
Strand: Direct
Name: yicG [C]
Synonym: GBP346_A3184
Alternate gene names: 237813409
Gene position: 3079906-3080526 (Clockwise)
Preceding gene: 237813408
Following gene: 237813415
Centisome position: 75.15
GC content: 68.76
Gene sequence:
>621_bases GTGCACCCGAGGCTCACGCTCGCGATCGCGGTGCTCGAGGCGATCGCGACGCTCGCGTTCGCGATCTCCGGCTTCGTCGA GGCGCGCAAAAACCGGCTCGATTCGGTCGGCACGTTCGTCGTCGCGCTCGCGACCGCGTTCGGCGGCGGCACGATGCGCG ACGTCCTGCTCGAGCGCCGGCCGTTCTACTGGGTCGAACATCAGGCGTACGTGATCGCGATCTTCGGCCTGTCGCTCGTC GCGCCGCTCGTCCTCCGGATGGCGTCGCGGCTGTCGGCGGAACGGCTGCTGCTCGCCGCCGACGCGATCGGCCTCGGCAT CTTCAGCATCTCCGGCACGTCGATCGCGCTCGACGCGCAGATGCCGCGGTTCGTCGCCGCGATGATGGGCGTGACGACGG GCGTGTTCGGCGGAGTGATCCGCGACGTGCTGTGCAACGACATTCCGCTGATCCTGCGCGACTCGCGGCCGTACGCGACC TGCGCGTTCGCCGGGTGCTGGGTCTATCTGCTGCTCGTGTGGCTGCAGTTCGATTCCGTCTACAGCGTGCTCGCGGCGAC GGCCTTCATCCTCGTCGCGCGGCTCGTCACCTACCAGCTCGATATCCGGCTGCCGCACTAG
Upstream 100 bases:
>100_bases GTGATCGCATTCTGCCAGGCGCGCGGCCACGACGGCGGCGCGGGCGCCGTGCTCGTGCTGCTGCAGCCGTCGTAGACGCG CAACGGCGACGGGAGGCCGC
Downstream 100 bases:
>100_bases CCGCGCGTCGTGCGCCATGCGTCGCATGAAAAAGGGCGGCCCGCGCATGCGCGGCCGCCCTTGCCCTGTCTCGCTTCCAG TCTTGTCCGGCCCGCCGGAT
Product: YadS protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 206; Mature: 206
Protein sequence:
>206_residues MHPRLTLAIAVLEAIATLAFAISGFVEARKNRLDSVGTFVVALATAFGGGTMRDVLLERRPFYWVEHQAYVIAIFGLSLV APLVLRMASRLSAERLLLAADAIGLGIFSISGTSIALDAQMPRFVAAMMGVTTGVFGGVIRDVLCNDIPLILRDSRPYAT CAFAGCWVYLLLVWLQFDSVYSVLAATAFILVARLVTYQLDIRLPH
Sequences:
>Translated_206_residues MHPRLTLAIAVLEAIATLAFAISGFVEARKNRLDSVGTFVVALATAFGGGTMRDVLLERRPFYWVEHQAYVIAIFGLSLV APLVLRMASRLSAERLLLAADAIGLGIFSISGTSIALDAQMPRFVAAMMGVTTGVFGGVIRDVLCNDIPLILRDSRPYAT CAFAGCWVYLLLVWLQFDSVYSVLAATAFILVARLVTYQLDIRLPH >Mature_206_residues MHPRLTLAIAVLEAIATLAFAISGFVEARKNRLDSVGTFVVALATAFGGGTMRDVLLERRPFYWVEHQAYVIAIFGLSLV APLVLRMASRLSAERLLLAADAIGLGIFSISGTSIALDAQMPRFVAAMMGVTTGVFGGVIRDVLCNDIPLILRDSRPYAT CAFAGCWVYLLLVWLQFDSVYSVLAATAFILVARLVTYQLDIRLPH
Specific function: Unknown
COG id: COG2860
COG function: function code S; Predicted membrane protein
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Probable) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the UPF0126 family [H]
Homologues:
Organism=Escherichia coli, GI87082304, Length=162, Percent_Identity=38.2716049382716, Blast_Score=110, Evalue=7e-26, Organism=Escherichia coli, GI1786352, Length=158, Percent_Identity=39.2405063291139, Blast_Score=85, Evalue=3e-18,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005115 [H]
Pfam domain/function: PF03458 UPF0126 [H]
EC number: NA
Molecular weight: Translated: 22394; Mature: 22394
Theoretical pI: Translated: 8.48; Mature: 8.48
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 2.9 %Met (Translated Protein) 4.4 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 2.9 %Met (Mature Protein) 4.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MHPRLTLAIAVLEAIATLAFAISGFVEARKNRLDSVGTFVVALATAFGGGTMRDVLLERR CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCC PFYWVEHQAYVIAIFGLSLVAPLVLRMASRLSAERLLLAADAIGLGIFSISGTSIALDAQ CCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCEEEECCH MPRFVAAMMGVTTGVFGGVIRDVLCNDIPLILRDSRPYATCAFAGCWVYLLLVWLQFDSV HHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHH YSVLAATAFILVARLVTYQLDIRLPH HHHHHHHHHHHHHHHHHHHHEEECCC >Mature Secondary Structure MHPRLTLAIAVLEAIATLAFAISGFVEARKNRLDSVGTFVVALATAFGGGTMRDVLLERR CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCC PFYWVEHQAYVIAIFGLSLVAPLVLRMASRLSAERLLLAADAIGLGIFSISGTSIALDAQ CCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCEEEECCH MPRFVAAMMGVTTGVFGGVIRDVLCNDIPLILRDSRPYATCAFAGCWVYLLLVWLQFDSV HHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHH YSVLAATAFILVARLVTYQLDIRLPH HHHHHHHHHHHHHHHHHHHHEEECCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 10688204 [H]