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The map label for this gene is yfcN [C]

Identifier: 237813408

GI number: 237813408

Start: 3079143

End: 3079880

Strand: Direct

Name: yfcN [C]

Synonym: GBP346_A3183

Alternate gene names: 237813408

Gene position: 3079143-3079880 (Clockwise)

Preceding gene: 237813407

Following gene: 237813409

Centisome position: 75.13

GC content: 74.12

Gene sequence:

>738_bases
ATGGCGAAGAACCAGCCTCATCCGAGCGACCCTGCGAAGCGGCAAGCCCCCGCCCGCGCGACCGAACCGGCGCCCGCGAG
CCCGCCCGCCGCGCCTGCCGCGCTGCGCGGCCAGGGCCTCGCCGGGCTCGGCTCGCTGCGCGCGGCGCTCACCGGCGCAT
CCGAGCGCCGCGCGCGCGAGGCGGCGCAGGCGCAGCAGTCGGCCCGCCAGGCCGCGGCCGACGCCGACCTGTTTCGCCGC
GAGATCGGCGCGATCAAGCCGCTCGCCGCGCCGCCGCGCGCCGCGAGCGGCCGCCTCGCGCCCGCGCCCGTGCCGAAGCA
CACGCGGCAGGACGAGGAAGCGGTGCTCTCCGAGACCTTGTCCGACGAATTCGATCCGGAAACGCTGCTCGATACCGACG
AAACGCTGTACTACCACCGCCCCGGCGTGAGCCGCGACGTCGTGCGCAAGCTCAGGAGCGGCGCATGGATCGTTCAGGCG
CAGCTCGACCTGCACGGCATGCGGCGCGACGAAGCGCGCGAGGCGCTTGCCGAATTCATCCGCGAGTCGGGCAAGAAGGG
GCTGCGCTGCCTGCGCGTGATTCACGGCAAGGGGCTCGGCTCGATCGGCAAGGAGCCGGTGCTCAAGGGCAAGGTGCGCG
CGTGGCTCGTGCAGAAGGACGAGGTGATCGCATTCTGCCAGGCGCGCGGCCACGACGGCGGCGCGGGCGCCGTGCTCGTG
CTGCTGCAGCCGTCGTAG

Upstream 100 bases:

>100_bases
GCCGCTGCGCGCATCGCGCAGCGGCTTTTTCACGCCCGCCGGCCCGAACCGCCGCACCGCGCGCCCGCCCCCCGAGGGTA
TCCGATCGTATCGAATCATC

Downstream 100 bases:

>100_bases
ACGCGCAACGGCGACGGGAGGCCGCGTGCACCCGAGGCTCACGCTCGCGATCGCGGTGCTCGAGGCGATCGCGACGCTCG
CGTTCGCGATCTCCGGCTTC

Product: Smr domain protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 245; Mature: 244

Protein sequence:

>245_residues
MAKNQPHPSDPAKRQAPARATEPAPASPPAAPAALRGQGLAGLGSLRAALTGASERRAREAAQAQQSARQAAADADLFRR
EIGAIKPLAAPPRAASGRLAPAPVPKHTRQDEEAVLSETLSDEFDPETLLDTDETLYYHRPGVSRDVVRKLRSGAWIVQA
QLDLHGMRRDEAREALAEFIRESGKKGLRCLRVIHGKGLGSIGKEPVLKGKVRAWLVQKDEVIAFCQARGHDGGAGAVLV
LLQPS

Sequences:

>Translated_245_residues
MAKNQPHPSDPAKRQAPARATEPAPASPPAAPAALRGQGLAGLGSLRAALTGASERRAREAAQAQQSARQAAADADLFRR
EIGAIKPLAAPPRAASGRLAPAPVPKHTRQDEEAVLSETLSDEFDPETLLDTDETLYYHRPGVSRDVVRKLRSGAWIVQA
QLDLHGMRRDEAREALAEFIRESGKKGLRCLRVIHGKGLGSIGKEPVLKGKVRAWLVQKDEVIAFCQARGHDGGAGAVLV
LLQPS
>Mature_244_residues
AKNQPHPSDPAKRQAPARATEPAPASPPAAPAALRGQGLAGLGSLRAALTGASERRAREAAQAQQSARQAAADADLFRRE
IGAIKPLAAPPRAASGRLAPAPVPKHTRQDEEAVLSETLSDEFDPETLLDTDETLYYHRPGVSRDVVRKLRSGAWIVQAQ
LDLHGMRRDEAREALAEFIRESGKKGLRCLRVIHGKGLGSIGKEPVLKGKVRAWLVQKDEVIAFCQARGHDGGAGAVLVL
LQPS

Specific function: Unknown

COG id: COG2840

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Smr domain [H]

Homologues:

Organism=Escherichia coli, GI1788671, Length=173, Percent_Identity=32.9479768786127, Blast_Score=77, Evalue=9e-16,
Organism=Escherichia coli, GI1787602, Length=127, Percent_Identity=34.6456692913386, Blast_Score=74, Evalue=1e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002625
- InterPro:   IPR022990 [H]

Pfam domain/function: PF01713 Smr [H]

EC number: NA

Molecular weight: Translated: 26160; Mature: 26029

Theoretical pI: Translated: 10.41; Mature: 10.41

Prosite motif: PS50828 SMR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
0.4 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAKNQPHPSDPAKRQAPARATEPAPASPPAAPAALRGQGLAGLGSLRAALTGASERRARE
CCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCHHHCCCCCCHHHHHHHHHHCCHHHHHHH
AAQAQQSARQAAADADLFRREIGAIKPLAAPPRAASGRLAPAPVPKHTRQDEEAVLSETL
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH
SDEFDPETLLDTDETLYYHRPGVSRDVVRKLRSGAWIVQAQLDLHGMRRDEAREALAEFI
HCCCCCHHHCCCCCEEEEECCCCCHHHHHHHHCCCEEEEEECCHHCCCHHHHHHHHHHHH
RESGKKGLRCLRVIHGKGLGSIGKEPVLKGKVRAWLVQKDEVIAFCQARGHDGGAGAVLV
HHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHEECCCHHHHHHHHCCCCCCCCEEEE
LLQPS
EECCC
>Mature Secondary Structure 
AKNQPHPSDPAKRQAPARATEPAPASPPAAPAALRGQGLAGLGSLRAALTGASERRARE
CCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCHHHCCCCCCHHHHHHHHHHCCHHHHHHH
AAQAQQSARQAAADADLFRREIGAIKPLAAPPRAASGRLAPAPVPKHTRQDEEAVLSETL
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH
SDEFDPETLLDTDETLYYHRPGVSRDVVRKLRSGAWIVQAQLDLHGMRRDEAREALAEFI
HCCCCCHHHCCCCCEEEEECCCCCHHHHHHHHCCCEEEEEECCHHCCCHHHHHHHHHHHH
RESGKKGLRCLRVIHGKGLGSIGKEPVLKGKVRAWLVQKDEVIAFCQARGHDGGAGAVLV
HHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHEECCCHHHHHHHHCCCCCCCCEEEE
LLQPS
EECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA