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The map label for this gene is degT [H]

Identifier: 23502464

GI number: 23502464

Start: 1545334

End: 1546458

Strand: Reverse

Name: degT [H]

Synonym: BR1601

Alternate gene names: 23502464

Gene position: 1546458-1545334 (Counterclockwise)

Preceding gene: 23502465

Following gene: 23502462

Centisome position: 73.37

GC content: 56.62

Gene sequence:

>1125_bases
ATGCAGTTCATTGATCTTGGAGCGCAGCGCGCGCGTATCGAAAATCGTCTCAATGCCGCCATTTCCAAGGTTGTTGCGGA
AGGCCGTTATATTCTTGGGCCGGAAGTGGCTGAATTTGAAAAAAAGCTTGGCGAATATCTGGGTGTGGAGCATGTCATCG
CCTGTGCCAATGGCACTGACGCCTTGCAGATGCCCCTGATGACACGCGGCATCGGGCCGGGCCATGCGGTTTTTGTTCCG
TCCTTCACCTTTGCAGCGACCGCTGAGGTTGTTGCGCTCGTCGGTGCAGAGCCGGTATTCGTTGATGTCGATCCAGATAG
CTACAACATGAATGTCGAGCAGCTCGAAGCTGCCATTGCCGCCACCATCAAGGAAGGTCGTCTGGAGCCGAAGGCGATCA
TTCCGGTCGATCTTTTTGGCCTTGCCGCCTCTTACAATCGCATCACCGCCATTGCCGAGCGCGAAGGCCTGTTCATCATC
GAGGATGCGGCCCAGTCCATCGGCGGCAAGCGCGACAATGTCATGTGCGGCGCTTTCGGCCATGTGGGCGCAACCAGCTT
CTATCCCGCCAAGCCGCTTGGCTGCTACGGTGACGGTGGCGCCATGTTCACCAATGATGCAGAATTGGCAGATACACTGC
GCTCCGTGCTGTTCCACGGCAAGGGCGAGACGCAGTATGACAATGTCCGCATCGGCATCAATTCTCGCCTGGATACGATA
CAGGCGGCTGTTCTTCTGGAAAAGCTTGCCATTCTCGAAGATGAGATGGAAGCCCGCGACCGCATTGCAAGGCGCTATAA
TGAGGCGCTGAAGGATGTGGTGAAGGTGCCGGAACTTCCAGCCGGCAACCGCTCGGCCTGGGCGCAATATTCTATCGAAA
GCGAGAACCGCGACGGCTTGAAGGCACAACTTCAGGCAGAAGGTATTCCGTCCGTCATCTATTATGTGAAGCCTCTGCAC
TTGCAGACGGCCTATAAGCACTATTCCGTTGCCCCCGGTGGCCTGCCGGTTTCGGAAAGCCTGCCATCACGCATTCTGAG
CCTGCCGATGCATCCTTACCTTTCGGAAGCTGACCAGGACAAGATTATCGGCGTGATCCGTGGCTTCCACGGCAAGAAGG
CCTGA

Upstream 100 bases:

>100_bases
TTTGAACGCTCCGGCCATGGCAGGGCGGGGCGCAAGCGAATAAATAGATGGCCGAGGATTCGCACCGGTTTTCGTGCGGG
CCAGATATATTGGAGCCAAC

Downstream 100 bases:

>100_bases
ATTGGCTGAATTATATGAAGTGATCAAAACCCGGCGAAAGCCGGGTTTTGTTTATGCTCGCAAATTCAGTTGCCAGGATG
CACTCAGCCGATCATGGCGC

Product: DegT/DnrJ/EryC1/StrS family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 374; Mature: 374

Protein sequence:

>374_residues
MQFIDLGAQRARIENRLNAAISKVVAEGRYILGPEVAEFEKKLGEYLGVEHVIACANGTDALQMPLMTRGIGPGHAVFVP
SFTFAATAEVVALVGAEPVFVDVDPDSYNMNVEQLEAAIAATIKEGRLEPKAIIPVDLFGLAASYNRITAIAEREGLFII
EDAAQSIGGKRDNVMCGAFGHVGATSFYPAKPLGCYGDGGAMFTNDAELADTLRSVLFHGKGETQYDNVRIGINSRLDTI
QAAVLLEKLAILEDEMEARDRIARRYNEALKDVVKVPELPAGNRSAWAQYSIESENRDGLKAQLQAEGIPSVIYYVKPLH
LQTAYKHYSVAPGGLPVSESLPSRILSLPMHPYLSEADQDKIIGVIRGFHGKKA

Sequences:

>Translated_374_residues
MQFIDLGAQRARIENRLNAAISKVVAEGRYILGPEVAEFEKKLGEYLGVEHVIACANGTDALQMPLMTRGIGPGHAVFVP
SFTFAATAEVVALVGAEPVFVDVDPDSYNMNVEQLEAAIAATIKEGRLEPKAIIPVDLFGLAASYNRITAIAEREGLFII
EDAAQSIGGKRDNVMCGAFGHVGATSFYPAKPLGCYGDGGAMFTNDAELADTLRSVLFHGKGETQYDNVRIGINSRLDTI
QAAVLLEKLAILEDEMEARDRIARRYNEALKDVVKVPELPAGNRSAWAQYSIESENRDGLKAQLQAEGIPSVIYYVKPLH
LQTAYKHYSVAPGGLPVSESLPSRILSLPMHPYLSEADQDKIIGVIRGFHGKKA
>Mature_374_residues
MQFIDLGAQRARIENRLNAAISKVVAEGRYILGPEVAEFEKKLGEYLGVEHVIACANGTDALQMPLMTRGIGPGHAVFVP
SFTFAATAEVVALVGAEPVFVDVDPDSYNMNVEQLEAAIAATIKEGRLEPKAIIPVDLFGLAASYNRITAIAEREGLFII
EDAAQSIGGKRDNVMCGAFGHVGATSFYPAKPLGCYGDGGAMFTNDAELADTLRSVLFHGKGETQYDNVRIGINSRLDTI
QAAVLLEKLAILEDEMEARDRIARRYNEALKDVVKVPELPAGNRSAWAQYSIESENRDGLKAQLQAEGIPSVIYYVKPLH
LQTAYKHYSVAPGGLPVSESLPSRILSLPMHPYLSEADQDKIIGVIRGFHGKKA

Specific function: This membrane protein may function as a sensor protein and may transfer the signal of environmental stimuli to the regulatory region of target genes to activate or repress transcription of the genes [H]

COG id: COG0399

COG function: function code M; Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis

Gene ontology:

Cell location: Cell membrane; Peripheral membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the degT/dnrJ/eryC1 family [H]

Homologues:

Organism=Escherichia coli, GI145693159, Length=373, Percent_Identity=32.4396782841823, Blast_Score=149, Evalue=2e-37,
Organism=Escherichia coli, GI2367285, Length=347, Percent_Identity=29.3948126801153, Blast_Score=136, Evalue=3e-33,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000653
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR015422 [H]

Pfam domain/function: PF01041 DegT_DnrJ_EryC1 [H]

EC number: NA

Molecular weight: Translated: 40528; Mature: 40528

Theoretical pI: Translated: 5.16; Mature: 5.16

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQFIDLGAQRARIENRLNAAISKVVAEGRYILGPEVAEFEKKLGEYLGVEHVIACANGTD
CCCHHCCHHHHHHHHHHHHHHHHHHHCCCEEECCCHHHHHHHHHHHHCHHHEEEECCCCC
ALQMPLMTRGIGPGHAVFVPSFTFAATAEVVALVGAEPVFVDVDPDSYNMNVEQLEAAIA
HHCCCHHHCCCCCCCEEEECCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHH
ATIKEGRLEPKAIIPVDLFGLAASYNRITAIAEREGLFIIEDAAQSIGGKRDNVMCGAFG
HHHHHCCCCCCEECCCHHHHHHHCCHHHEEEECCCCEEEEECHHHHCCCCCCCEEEECCC
HVGATSFYPAKPLGCYGDGGAMFTNDAELADTLRSVLFHGKGETQYDNVRIGINSRLDTI
CCCCCCCCCCCCCCEECCCCCEECCCHHHHHHHHHHHHCCCCCCCCCCEEEECCCCHHHH
QAAVLLEKLAILEDEMEARDRIARRYNEALKDVVKVPELPAGNRSAWAQYSIESENRDGL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCCCC
KAQLQAEGIPSVIYYVKPLHLQTAYKHYSVAPGGLPVSESLPSRILSLPMHPYLSEADQD
EEEEECCCCCEEEEEECHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCHHHCCCCHH
KIIGVIRGFHGKKA
HHHHHHHCCCCCCC
>Mature Secondary Structure
MQFIDLGAQRARIENRLNAAISKVVAEGRYILGPEVAEFEKKLGEYLGVEHVIACANGTD
CCCHHCCHHHHHHHHHHHHHHHHHHHCCCEEECCCHHHHHHHHHHHHCHHHEEEECCCCC
ALQMPLMTRGIGPGHAVFVPSFTFAATAEVVALVGAEPVFVDVDPDSYNMNVEQLEAAIA
HHCCCHHHCCCCCCCEEEECCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHH
ATIKEGRLEPKAIIPVDLFGLAASYNRITAIAEREGLFIIEDAAQSIGGKRDNVMCGAFG
HHHHHCCCCCCEECCCHHHHHHHCCHHHEEEECCCCEEEEECHHHHCCCCCCCEEEECCC
HVGATSFYPAKPLGCYGDGGAMFTNDAELADTLRSVLFHGKGETQYDNVRIGINSRLDTI
CCCCCCCCCCCCCCEECCCCCEECCCHHHHHHHHHHHHCCCCCCCCCCEEEECCCCHHHH
QAAVLLEKLAILEDEMEARDRIARRYNEALKDVVKVPELPAGNRSAWAQYSIESENRDGL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCCCC
KAQLQAEGIPSVIYYVKPLHLQTAYKHYSVAPGGLPVSESLPSRILSLPMHPYLSEADQD
EEEEECCCCCEEEEEECHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCHHHCCCCHH
KIIGVIRGFHGKKA
HHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 2104607 [H]