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The map label for this gene is xerC [H]

Identifier: 23501523

GI number: 23501523

Start: 629481

End: 630407

Strand: Reverse

Name: xerC [H]

Synonym: BR0636

Alternate gene names: 23501523

Gene position: 630407-629481 (Counterclockwise)

Preceding gene: 23501524

Following gene: 23501522

Centisome position: 29.91

GC content: 52.21

Gene sequence:

>927_bases
GTGATCATCGTTGGGGAAACGAAGATCGATACGGGCGACAAATATGCGCCAATTATCGATTACAATCTGAATTATATATC
CGGCAAAAATCCAAAGCACCGGCTCGTCGAGCACTATTCGGTGGCGGAGCTGACGGCAAAATATATCAATATCCTCTGGG
ATGATGGATCGCATAAATATAATGTAAGGTCGTTCCTCGGCGAGATTGACGAGATTCTGAAAGGCGCACGTTTTTCAGGT
TTTGATCAGGAAATGCTCGATTCCATCATCGGCACGCTTCGCGAACGCGGCAACAGCAATGCAACCATCAATAGAAAGAT
GGCTGCGCTGAGCAAGCTGCTGCGAAAGGCGCACAAGATGGGGGATATCTTCAATCTTCCGGAGTTTATCCGGCAGAAAG
AGCGCGTGGGGCGCATTCGATTCCTGGAACAGGAGGAAGAGAAGCGATTGTTCGCCGCAATAAAGTCGCGCTGCGAGGAC
AGCTATCGCCTATCGGTCTTTCTCGTGGATACGGGTTGCCGTCTTGGCGAAGCAATCGGCCTCACATGGAATGATATTCA
GGAACAACGGGTTACGTTCTGGGTCACCAAATCCAATCGCAGCCGCACCGTTCCCCTCACCCGGCGTGCACGAAAAGCAT
CCCATATTCCGCGTGAGAGGCTAAAAGGCCCCTTCTCCATGCTCAATCAGGTTCGGTTTCGCCAAATCTGGAACGAAGCG
AAGGCCGAAGTTGGCCTTGGCGCGGATGACCAAATCGTTCCGCACATTCTACGCCATACATGTGCGTCGCGACTGGTGCG
TGGGGGCATCGACATCCGCCGGGTTCAGATGTGGCTTGGTCACCAGACCTTGCAGATGACAATGCGCTACGCGCATCTGG
CAACACATGATCTCGATTCCTGCGTTAAGGTGCTCGAAATTCATTAG

Upstream 100 bases:

>100_bases
TAAAGGATCGAGCCATGTCTCCACATAAAGTTAGCCTACTTATCTTGTACTCTGCGATTTATTCCATTAGCTGTGCATCC
CGTACTTGGGGGGATGTGCA

Downstream 100 bases:

>100_bases
GCCACAACAAAAAGCGTCAAGCTGTGGCGATTTTGGAACGGACTTTGAGCCAACAGACCTTGCGGATAATGAGGGACTTC
CCGCCTATAGGACGTGATCT

Product: phage integrase family site specific recombinase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 308; Mature: 308

Protein sequence:

>308_residues
MIIVGETKIDTGDKYAPIIDYNLNYISGKNPKHRLVEHYSVAELTAKYINILWDDGSHKYNVRSFLGEIDEILKGARFSG
FDQEMLDSIIGTLRERGNSNATINRKMAALSKLLRKAHKMGDIFNLPEFIRQKERVGRIRFLEQEEEKRLFAAIKSRCED
SYRLSVFLVDTGCRLGEAIGLTWNDIQEQRVTFWVTKSNRSRTVPLTRRARKASHIPRERLKGPFSMLNQVRFRQIWNEA
KAEVGLGADDQIVPHILRHTCASRLVRGGIDIRRVQMWLGHQTLQMTMRYAHLATHDLDSCVKVLEIH

Sequences:

>Translated_308_residues
MIIVGETKIDTGDKYAPIIDYNLNYISGKNPKHRLVEHYSVAELTAKYINILWDDGSHKYNVRSFLGEIDEILKGARFSG
FDQEMLDSIIGTLRERGNSNATINRKMAALSKLLRKAHKMGDIFNLPEFIRQKERVGRIRFLEQEEEKRLFAAIKSRCED
SYRLSVFLVDTGCRLGEAIGLTWNDIQEQRVTFWVTKSNRSRTVPLTRRARKASHIPRERLKGPFSMLNQVRFRQIWNEA
KAEVGLGADDQIVPHILRHTCASRLVRGGIDIRRVQMWLGHQTLQMTMRYAHLATHDLDSCVKVLEIH
>Mature_308_residues
MIIVGETKIDTGDKYAPIIDYNLNYISGKNPKHRLVEHYSVAELTAKYINILWDDGSHKYNVRSFLGEIDEILKGARFSG
FDQEMLDSIIGTLRERGNSNATINRKMAALSKLLRKAHKMGDIFNLPEFIRQKERVGRIRFLEQEEEKRLFAAIKSRCED
SYRLSVFLVDTGCRLGEAIGLTWNDIQEQRVTFWVTKSNRSRTVPLTRRARKASHIPRERLKGPFSMLNQVRFRQIWNEA
KAEVGLGADDQIVPHILRHTCASRLVRGGIDIRRVQMWLGHQTLQMTMRYAHLATHDLDSCVKVLEIH

Specific function: Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The xerC-xerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell div

COG id: COG0582

COG function: function code L; Integrase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family. XerC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1789261, Length=146, Percent_Identity=34.9315068493151, Blast_Score=66, Evalue=3e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR010998
- InterPro:   IPR023109
- InterPro:   IPR004107
- InterPro:   IPR011931 [H]

Pfam domain/function: PF02899 Phage_integr_N; PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 35631; Mature: 35631

Theoretical pI: Translated: 10.17; Mature: 10.17

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIIVGETKIDTGDKYAPIIDYNLNYISGKNPKHRLVEHYSVAELTAKYINILWDDGSHKY
CEEECCCCCCCCCCCCCEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHEECCCCCCC
NVRSFLGEIDEILKGARFSGFDQEMLDSIIGTLRERGNSNATINRKMAALSKLLRKAHKM
HHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHC
GDIFNLPEFIRQKERVGRIRFLEQEEEKRLFAAIKSRCEDSYRLSVFLVDTGCRLGEAIG
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEECCCCCCHHCC
LTWNDIQEQRVTFWVTKSNRSRTVPLTRRARKASHIPRERLKGPFSMLNQVRFRQIWNEA
CCHHHHCCCEEEEEEEECCCCCCCCHHHHHHHHHCCCHHHHCCHHHHHHHHHHHHHHHHH
KAEVGLGADDQIVPHILRHTCASRLVRGGIDIRRVQMWLGHQTLQMTMRYAHLATHDLDS
HHHCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
CVKVLEIH
HHHHHHCC
>Mature Secondary Structure
MIIVGETKIDTGDKYAPIIDYNLNYISGKNPKHRLVEHYSVAELTAKYINILWDDGSHKY
CEEECCCCCCCCCCCCCEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHEECCCCCCC
NVRSFLGEIDEILKGARFSGFDQEMLDSIIGTLRERGNSNATINRKMAALSKLLRKAHKM
HHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHC
GDIFNLPEFIRQKERVGRIRFLEQEEEKRLFAAIKSRCEDSYRLSVFLVDTGCRLGEAIG
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEECCCCCCHHCC
LTWNDIQEQRVTFWVTKSNRSRTVPLTRRARKASHIPRERLKGPFSMLNQVRFRQIWNEA
CCHHHHCCCEEEEEEEECCCCCCCCHHHHHHHHHCCCHHHHCCHHHHHHHHHHHHHHHHH
KAEVGLGADDQIVPHILRHTCASRLVRGGIDIRRVQMWLGHQTLQMTMRYAHLATHDLDS
HHHCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
CVKVLEIH
HHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA