Click here to switch to the map view.

The map label for this gene is omp2a [H]

Identifier: 23501524

GI number: 23501524

Start: 630681

End: 631784

Strand: Reverse

Name: omp2a [H]

Synonym: BR0637

Alternate gene names: 23501524

Gene position: 631784-630681 (Counterclockwise)

Preceding gene: 23501525

Following gene: 23501523

Centisome position: 29.97

GC content: 56.7

Gene sequence:

>1104_bases
ATGAACATCAAGAGCCTTCTCCTTGGCTCCGCTGCAGCTCTGGTTGCAGCTTCCGGCGCTCAGGCTGCCGACGCAATCGT
CGCGCCAGAGCCCGAAGCCGTTGAATATGTCCGCGTTTGCGACGCTTACGGCGCTGGCTACTTCTACATTCCGGGCACCG
AAACCTGCCTGCGCGTCCATGGTTACGTCCGTTACGACGTAAAGGGCGGCGACGACGTTTATACCGGCTCGGATCGTAAA
GGCTGGGACAAGGGCGCTCGTTTCGCACTCATGTTCAACACGAATTCGGAAACCGAACTCGGCACACTCGGCACCTATAC
TCAGCTGCGCTTCAACTACACCAGCAACAATTCACGTCATGATGGCCAATACGGCGATTTCAGCGATGATCGTGATGTCG
CTGATGGCGGCGTAAGCACCGGCACCGATCTGCAGTTTGCATATATCACGCTTGGTGGTTTCAAGGTTGGTATCGACGAA
TCCGAATTCCATACCTTCACCGGTTACCTCGGTGATGTCATCAACGATGATGTCGTCGCTGCTGGCTCCTACCGCACCGG
CAAGATCGCCTACACCTTCACCGGCGGAAACGGCTTCTCGGCTGTGATCGCTCTCGAACAGGGTGGCGAAGACGTTGACA
ACGATTACACGATCGACGGTTACATGCCGCACGTTGTTGGCGGCCTGAAATATGCTGGCGGCTGGGGTTCGATCGCTGGT
GCTGTTGCCTATGACCCGGTCATCGAAGAATGGGCTACAAAGGTTCGTGGCGACGTCAACATCACCGACCGGTTCTCGGT
ATGGCTGCAGGGCGCATATTCGTCCGCAGCGACGCCGAACCAGAACTACGGTCAGTGGGGCGGCGATTGGGCTGTCTGGG
GTGGTGCAAAGTTCATTGCCACCGAAAAGGTAACCTTCAATCTGCAGGCTGCGCATGACGACTGGGGCAAGACCGCAGTT
ACCGCCAACGTCGCTTATCAGCTCGTTCCCGGATTCACCATTACGCCGGAAGTTTCCTACACCAAATTTGGTGGCGAGTG
GAAAGACACCGTTGCTGAAGACAATGCCTGGGGCGGTATCGTTCGCTTCCAGCGCTCGTTCTAA

Upstream 100 bases:

>100_bases
TGAATCTCTGTTTTTCCAGGCTACGAATCCAGAAAACAAGCAAGCCATTGATAAGTAATGGCTATTCAAAATTCTGGCGA
TTCTTGACTGGAGGTCAGAA

Downstream 100 bases:

>100_bases
TCAGATCGACGTTAAGCATAGGGCGCCAACGGTTTCCCGTTGGCGCCGGTTCATTTGAAACAGCGTTCACGAAAGCGTGA
GAATCGATTCTTCCGGAATG

Product: porin Omp2a

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 367; Mature: 367

Protein sequence:

>367_residues
MNIKSLLLGSAAALVAASGAQAADAIVAPEPEAVEYVRVCDAYGAGYFYIPGTETCLRVHGYVRYDVKGGDDVYTGSDRK
GWDKGARFALMFNTNSETELGTLGTYTQLRFNYTSNNSRHDGQYGDFSDDRDVADGGVSTGTDLQFAYITLGGFKVGIDE
SEFHTFTGYLGDVINDDVVAAGSYRTGKIAYTFTGGNGFSAVIALEQGGEDVDNDYTIDGYMPHVVGGLKYAGGWGSIAG
AVAYDPVIEEWATKVRGDVNITDRFSVWLQGAYSSAATPNQNYGQWGGDWAVWGGAKFIATEKVTFNLQAAHDDWGKTAV
TANVAYQLVPGFTITPEVSYTKFGGEWKDTVAEDNAWGGIVRFQRSF

Sequences:

>Translated_367_residues
MNIKSLLLGSAAALVAASGAQAADAIVAPEPEAVEYVRVCDAYGAGYFYIPGTETCLRVHGYVRYDVKGGDDVYTGSDRK
GWDKGARFALMFNTNSETELGTLGTYTQLRFNYTSNNSRHDGQYGDFSDDRDVADGGVSTGTDLQFAYITLGGFKVGIDE
SEFHTFTGYLGDVINDDVVAAGSYRTGKIAYTFTGGNGFSAVIALEQGGEDVDNDYTIDGYMPHVVGGLKYAGGWGSIAG
AVAYDPVIEEWATKVRGDVNITDRFSVWLQGAYSSAATPNQNYGQWGGDWAVWGGAKFIATEKVTFNLQAAHDDWGKTAV
TANVAYQLVPGFTITPEVSYTKFGGEWKDTVAEDNAWGGIVRFQRSF
>Mature_367_residues
MNIKSLLLGSAAALVAASGAQAADAIVAPEPEAVEYVRVCDAYGAGYFYIPGTETCLRVHGYVRYDVKGGDDVYTGSDRK
GWDKGARFALMFNTNSETELGTLGTYTQLRFNYTSNNSRHDGQYGDFSDDRDVADGGVSTGTDLQFAYITLGGFKVGIDE
SEFHTFTGYLGDVINDDVVAAGSYRTGKIAYTFTGGNGFSAVIALEQGGEDVDNDYTIDGYMPHVVGGLKYAGGWGSIAG
AVAYDPVIEEWATKVRGDVNITDRFSVWLQGAYSSAATPNQNYGQWGGDWAVWGGAKFIATEKVTFNLQAAHDDWGKTAV
TANVAYQLVPGFTITPEVSYTKFGGEWKDTVAEDNAWGGIVRFQRSF

Specific function: Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell outer membrane; Multi-pass membrane protein [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the alphaproteobacteria porin family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003684 [H]

Pfam domain/function: PF02530 Porin_2 [H]

EC number: NA

Molecular weight: Translated: 39507; Mature: 39507

Theoretical pI: Translated: 4.29; Mature: 4.29

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNIKSLLLGSAAALVAASGAQAADAIVAPEPEAVEYVRVCDAYGAGYFYIPGTETCLRVH
CCHHHHHHCCHHHEEEECCCCCCCEEECCCCHHHHHHHHHHHCCCCEEEECCCCEEEEEE
GYVRYDVKGGDDVYTGSDRKGWDKGARFALMFNTNSETELGTLGTYTQLRFNYTSNNSRH
EEEEEEECCCCCEEECCCCCCCCCCCEEEEEEECCCCCCCCCCCCEEEEEEEECCCCCCC
DGQYGDFSDDRDVADGGVSTGTDLQFAYITLGGFKVGIDESEFHTFTGYLGDVINDDVVA
CCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCEEECCCCCHHEEHHHHHHHHCCCCEEE
AGSYRTGKIAYTFTGGNGFSAVIALEQGGEDVDNDYTIDGYMPHVVGGLKYAGGWGSIAG
ECCCCCCEEEEEEECCCCEEEEEEEECCCCCCCCCEEECCCCHHHHCCEEECCCCCCCCC
AVAYDPVIEEWATKVRGDVNITDRFSVWLQGAYSSAATPNQNYGQWGGDWAVWGGAKFIA
HHHHHHHHHHHHHHHCCCCCEEEEEEEEEEECCCCCCCCCCCCCCCCCCEEEECCEEEEE
TEKVTFNLQAAHDDWGKTAVTANVAYQLVPGFTITPEVSYTKFGGEWKDTVAEDNAWGGI
EEEEEEEEEECCCCCCCEEEEEEEEEEEECCEEECCCCCEEECCCCHHHHHCCCCCCCCE
VRFQRSF
EEEEECC
>Mature Secondary Structure
MNIKSLLLGSAAALVAASGAQAADAIVAPEPEAVEYVRVCDAYGAGYFYIPGTETCLRVH
CCHHHHHHCCHHHEEEECCCCCCCEEECCCCHHHHHHHHHHHCCCCEEEECCCCEEEEEE
GYVRYDVKGGDDVYTGSDRKGWDKGARFALMFNTNSETELGTLGTYTQLRFNYTSNNSRH
EEEEEEECCCCCEEECCCCCCCCCCCEEEEEEECCCCCCCCCCCCEEEEEEEECCCCCCC
DGQYGDFSDDRDVADGGVSTGTDLQFAYITLGGFKVGIDESEFHTFTGYLGDVINDDVVA
CCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCEEECCCCCHHEEHHHHHHHHCCCCEEE
AGSYRTGKIAYTFTGGNGFSAVIALEQGGEDVDNDYTIDGYMPHVVGGLKYAGGWGSIAG
ECCCCCCEEEEEEECCCCEEEEEEEECCCCCCCCCEEECCCCHHHHCCEEECCCCCCCCC
AVAYDPVIEEWATKVRGDVNITDRFSVWLQGAYSSAATPNQNYGQWGGDWAVWGGAKFIA
HHHHHHHHHHHHHHHCCCCCEEEEEEEEEEECCCCCCCCCCCCCCCCCCEEEECCEEEEE
TEKVTFNLQAAHDDWGKTAVTANVAYQLVPGFTITPEVSYTKFGGEWKDTVAEDNAWGGI
EEEEEEEEEECCCCCCCEEEEEEEEEEEECCEEECCCCCEEECCCCHHHHHCCCCCCCCE
VRFQRSF
EEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA