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The map label for this gene is araR [H]

Identifier: 23100255

GI number: 23100255

Start: 2880586

End: 2881677

Strand: Direct

Name: araR [H]

Synonym: OB2800

Alternate gene names: 23100255

Gene position: 2880586-2881677 (Clockwise)

Preceding gene: 23100250

Following gene: 23100257

Centisome position: 79.34

GC content: 33.61

Gene sequence:

>1092_bases
ATGAAACCTAAATATCAAGTCATCATAGATGATATGAAAAGTAAGATTCTCTCAGGAGAATACAGTGTGTTAGATAAAAT
CCCAACAGAATCCTCCTTGCAACAAAATTATAATGTTAGTCGTCACACAGTTCGTAAAGCTATCCTAGAATTATCTAATG
AAGGTTTTTTGCGGAGTGAAAAAGGATCAGGCACTTATGTTAGTAACCTTTACAAAACAAAATATAGTGGTAATACGAAC
AACAAAAAAACAATTGGTGTAATTACTACCTACATCTCAGATTATATTTTTCCATCGATTATTCGGGGAATTGAACGCAG
GTTGAATGAAGATAATTATTCTCTACTGTTGGCTAGCACAAATAATGACGTCGAACAAGAAAAAAAGGCGTTGGAAATGA
TGTTGTCCTATGGTATAGATGGTTTAATTGTTGAACCGACGAAAAGTAATTTATATAACCCAAATATAGCTTACTATTTA
CTATTTATGGAACAAGATATTCCATTCATTATGATCAATGCTTACTATGAAGAATTAGATGTACCATTTTTAAGTTTGGA
TGATGTACAATCCAGTTATCTTGCAACGAATGAATTGATTTTAAAAGGGCATAAGCAGATTGGTCTGATTTCAAAAGAAG
ATGATTTACAAGGAAAGTTCCGGATGAAAGGGTATATTAAAGCACTCGGAGAAGCAAAATTACGTTTTCAGCCTGAAAAT
GTGTTCTCTTACAATACCGAAACAAAGGAAAATTTATCGACTGACTTGAAGGATTTTATTAATGAAAATAGAGGTTTTCT
CACTGCCATTGTATGTTATAACGATGAAGTTGGTTTAGTTGTAGCCAATTTATGTAAACAGCTCGGGGTATCCATTCCAG
ATGAATTATCGATTATTGGACAGGACAATTCTTACATTGCTCAAAATGCAAATATCAAACTTACAACCTTGACACATCCC
CAAGAGCAAATGGGAAATGATGCCGCAGACTGGGTTATTAAGAAGTTACAGGGAAGCAAAGACGTATCAAACGAATATTA
CTATCAACCAAGGTTAATTAAAGGGGAAACGGTAAAAGAGCTAGAGAATTAA

Upstream 100 bases:

>100_bases
CAATCTATATTCTTTTCAATACCTCGAAACTATGTCAAAATATGTACATACAAGTATAGTGACAGGCTGTTAACACACGA
ACAATAAGGAAGTGATAATC

Downstream 100 bases:

>100_bases
AGCTAAACTTCATTTAGTTTGGCTTTCTTCCTCCACTGCCTTAACCTCTACCCGATTTTACTCCAAAAAAAGAGTCACTC
CTTCACGAAGCAACTCTTGT

Product: arabinose operon transcriptional repressor

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 363; Mature: 363

Protein sequence:

>363_residues
MKPKYQVIIDDMKSKILSGEYSVLDKIPTESSLQQNYNVSRHTVRKAILELSNEGFLRSEKGSGTYVSNLYKTKYSGNTN
NKKTIGVITTYISDYIFPSIIRGIERRLNEDNYSLLLASTNNDVEQEKKALEMMLSYGIDGLIVEPTKSNLYNPNIAYYL
LFMEQDIPFIMINAYYEELDVPFLSLDDVQSSYLATNELILKGHKQIGLISKEDDLQGKFRMKGYIKALGEAKLRFQPEN
VFSYNTETKENLSTDLKDFINENRGFLTAIVCYNDEVGLVVANLCKQLGVSIPDELSIIGQDNSYIAQNANIKLTTLTHP
QEQMGNDAADWVIKKLQGSKDVSNEYYYQPRLIKGETVKELEN

Sequences:

>Translated_363_residues
MKPKYQVIIDDMKSKILSGEYSVLDKIPTESSLQQNYNVSRHTVRKAILELSNEGFLRSEKGSGTYVSNLYKTKYSGNTN
NKKTIGVITTYISDYIFPSIIRGIERRLNEDNYSLLLASTNNDVEQEKKALEMMLSYGIDGLIVEPTKSNLYNPNIAYYL
LFMEQDIPFIMINAYYEELDVPFLSLDDVQSSYLATNELILKGHKQIGLISKEDDLQGKFRMKGYIKALGEAKLRFQPEN
VFSYNTETKENLSTDLKDFINENRGFLTAIVCYNDEVGLVVANLCKQLGVSIPDELSIIGQDNSYIAQNANIKLTTLTHP
QEQMGNDAADWVIKKLQGSKDVSNEYYYQPRLIKGETVKELEN
>Mature_363_residues
MKPKYQVIIDDMKSKILSGEYSVLDKIPTESSLQQNYNVSRHTVRKAILELSNEGFLRSEKGSGTYVSNLYKTKYSGNTN
NKKTIGVITTYISDYIFPSIIRGIERRLNEDNYSLLLASTNNDVEQEKKALEMMLSYGIDGLIVEPTKSNLYNPNIAYYL
LFMEQDIPFIMINAYYEELDVPFLSLDDVQSSYLATNELILKGHKQIGLISKEDDLQGKFRMKGYIKALGEAKLRFQPEN
VFSYNTETKENLSTDLKDFINENRGFLTAIVCYNDEVGLVVANLCKQLGVSIPDELSIIGQDNSYIAQNANIKLTTLTHP
QEQMGNDAADWVIKKLQGSKDVSNEYYYQPRLIKGETVKELEN

Specific function: Transcriptional repressor of the arabinose utilization genes [H]

COG id: COG1609

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790369, Length=264, Percent_Identity=28.030303030303, Blast_Score=118, Evalue=6e-28,
Organism=Escherichia coli, GI48994940, Length=277, Percent_Identity=25.9927797833935, Blast_Score=102, Evalue=4e-23,
Organism=Escherichia coli, GI1787948, Length=284, Percent_Identity=24.6478873239437, Blast_Score=101, Evalue=6e-23,
Organism=Escherichia coli, GI1788474, Length=290, Percent_Identity=25.5172413793103, Blast_Score=100, Evalue=2e-22,
Organism=Escherichia coli, GI1789202, Length=239, Percent_Identity=23.8493723849372, Blast_Score=91, Evalue=1e-19,
Organism=Escherichia coli, GI1790194, Length=267, Percent_Identity=25.0936329588015, Blast_Score=86, Evalue=3e-18,
Organism=Escherichia coli, GI1790715, Length=260, Percent_Identity=25.7692307692308, Blast_Score=79, Evalue=5e-16,
Organism=Escherichia coli, GI1789068, Length=350, Percent_Identity=22.5714285714286, Blast_Score=66, Evalue=3e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000524
- InterPro:   IPR001761
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00392 GntR; PF00532 Peripla_BP_1 [H]

EC number: NA

Molecular weight: Translated: 41320; Mature: 41320

Theoretical pI: Translated: 4.88; Mature: 4.88

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKPKYQVIIDDMKSKILSGEYSVLDKIPTESSLQQNYNVSRHTVRKAILELSNEGFLRSE
CCCCHHHHHHHHHHHHHCCCHHHHHCCCCHHHHHHCCCCHHHHHHHHHHHHCCCCCEECC
KGSGTYVSNLYKTKYSGNTNNKKTIGVITTYISDYIFPSIIRGIERRLNEDNYSLLLAST
CCCCCCHHHHEEEECCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEC
NNDVEQEKKALEMMLSYGIDGLIVEPTKSNLYNPNIAYYLLFMEQDIPFIMINAYYEELD
CCCHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCEEEEEEEEECCCCEEEEEEEHHHHC
VPFLSLDDVQSSYLATNELILKGHKQIGLISKEDDLQGKFRMKGYIKALGEAKLRFQPEN
CCEEEHHHHHHHHHHHHHHHEECCCCEEEECCCCCCCCCHHHHHHHHHHCCCEEEECCCC
VFSYNTETKENLSTDLKDFINENRGFLTAIVCYNDEVGLVVANLCKQLGVSIPDELSIIG
CEECCCCCHHHHHHHHHHHHCCCCCEEEEEEEECCCHHHHHHHHHHHHCCCCCCCEEEEE
QDNSYIAQNANIKLTTLTHPQEQMGNDAADWVIKKLQGSKDVSNEYYYQPRLIKGETVKE
CCCCEEEECCCEEEEEECCCHHHHCCHHHHHHHHHHCCCCCCCCCEEECCEEECCCHHHH
LEN
HCC
>Mature Secondary Structure
MKPKYQVIIDDMKSKILSGEYSVLDKIPTESSLQQNYNVSRHTVRKAILELSNEGFLRSE
CCCCHHHHHHHHHHHHHCCCHHHHHCCCCHHHHHHCCCCHHHHHHHHHHHHCCCCCEECC
KGSGTYVSNLYKTKYSGNTNNKKTIGVITTYISDYIFPSIIRGIERRLNEDNYSLLLAST
CCCCCCHHHHEEEECCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEC
NNDVEQEKKALEMMLSYGIDGLIVEPTKSNLYNPNIAYYLLFMEQDIPFIMINAYYEELD
CCCHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCEEEEEEEEECCCCEEEEEEEHHHHC
VPFLSLDDVQSSYLATNELILKGHKQIGLISKEDDLQGKFRMKGYIKALGEAKLRFQPEN
CCEEEHHHHHHHHHHHHHHHEECCCCEEEECCCCCCCCCHHHHHHHHHHCCCEEEECCCC
VFSYNTETKENLSTDLKDFINENRGFLTAIVCYNDEVGLVVANLCKQLGVSIPDELSIIG
CEECCCCCHHHHHHHHHHHHCCCCCEEEEEEEECCCHHHHHHHHHHHHCCCCCCCEEEEE
QDNSYIAQNANIKLTTLTHPQEQMGNDAADWVIKKLQGSKDVSNEYYYQPRLIKGETVKE
CCCCEEEECCCEEEEEECCCHHHHCCHHHHHHHHHHCCCCCCCCCEEECCEEECCCHHHH
LEN
HCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11058132 [H]