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The map label for this gene is recO

Identifier: 23099405

GI number: 23099405

Start: 1978147

End: 1978923

Strand: Reverse

Name: recO

Synonym: OB1950

Alternate gene names: 23099405

Gene position: 1978923-1978147 (Counterclockwise)

Preceding gene: 23099406

Following gene: 23099404

Centisome position: 54.51

GC content: 32.43

Gene sequence:

>777_bases
TTGCTTGAAAAAATTGATGGAATTATTATTAAAACGAAAGACTATGGAGAAACGCATAAATTAGTAACTATATTTAGTAA
TAAAATAGGTAAATTTAATGCTTTGGCAAAAGGCGCAAAAAAACCAAAAAGTAGGATGGCTGCTGTTACGCAGCCATTCA
TTAATGCTCGATTCTTTGTATATATCGGATCAGGATTGAGTACGATACAACAGGGGGAAGTACTTGACTCTTTTCGGATT
ATTCGAGAAGATATTTTTAAAACTGCTTATGTATCATATATGGCAGAACTAACCGATAAACTGCTTGATGCTAAAGAAAA
TGACCCGTTCTTATACGAACAATTTTATCAGACTTTATTGTGGATAAATAATCAAGATGAGGTAGATATCCCTGTAATTA
TGTATGAATTAAAGTTATATAAAAAAGCAGGATTTGCCCCTGTTCTTCACCAATGTAGTAGATGCGGTAATCAAGAAGGC
CTGAGTAAGTTTTCAATTAGAGAAGGTGGCATGTTATGTCAACAATGCGCTTATTTTGATCCGGAAGCCATTCATATATC
GGAAAAGTTATCTCGTTTGCTGTATCTTTTTAGTGAAGTAGATTTAAAGCGAATTGGAAATATTCGAATGAAGAAAGAAA
ATGTTCAATTGATAAGAAAAATACTGTATGAGTATTATGATCAGTACGGTGGATTTTGGATAAAATCCCGTAAAGTATTA
GATCAACTCGATTTTTTTATTCCGAATGTAAAGAACGGTAATTCCTACAATGAATAA

Upstream 100 bases:

>100_bases
GCAACAATGGATAATAATGGACAGGCTAAAGAATCAACAGAAGTATCTTCTACTGAAACCAATCTATAGCTCATCTTGGA
AAGAAAGTAAGGTGAAGCGG

Downstream 100 bases:

>100_bases
AATTTCACTTTATGTAGATTGACAAATATGAACCGTATAGAGTATTATTTTTACATATTTAATAATAAATTCTATTGCGA
TGAAGAAGAAGAGTATTAAG

Product: DNA repair protein RecO

Products: NA

Alternate protein names: Recombination protein O

Number of amino acids: Translated: 258; Mature: 258

Protein sequence:

>258_residues
MLEKIDGIIIKTKDYGETHKLVTIFSNKIGKFNALAKGAKKPKSRMAAVTQPFINARFFVYIGSGLSTIQQGEVLDSFRI
IREDIFKTAYVSYMAELTDKLLDAKENDPFLYEQFYQTLLWINNQDEVDIPVIMYELKLYKKAGFAPVLHQCSRCGNQEG
LSKFSIREGGMLCQQCAYFDPEAIHISEKLSRLLYLFSEVDLKRIGNIRMKKENVQLIRKILYEYYDQYGGFWIKSRKVL
DQLDFFIPNVKNGNSYNE

Sequences:

>Translated_258_residues
MLEKIDGIIIKTKDYGETHKLVTIFSNKIGKFNALAKGAKKPKSRMAAVTQPFINARFFVYIGSGLSTIQQGEVLDSFRI
IREDIFKTAYVSYMAELTDKLLDAKENDPFLYEQFYQTLLWINNQDEVDIPVIMYELKLYKKAGFAPVLHQCSRCGNQEG
LSKFSIREGGMLCQQCAYFDPEAIHISEKLSRLLYLFSEVDLKRIGNIRMKKENVQLIRKILYEYYDQYGGFWIKSRKVL
DQLDFFIPNVKNGNSYNE
>Mature_258_residues
MLEKIDGIIIKTKDYGETHKLVTIFSNKIGKFNALAKGAKKPKSRMAAVTQPFINARFFVYIGSGLSTIQQGEVLDSFRI
IREDIFKTAYVSYMAELTDKLLDAKENDPFLYEQFYQTLLWINNQDEVDIPVIMYELKLYKKAGFAPVLHQCSRCGNQEG
LSKFSIREGGMLCQQCAYFDPEAIHISEKLSRLLYLFSEVDLKRIGNIRMKKENVQLIRKILYEYYDQYGGFWIKSRKVL
DQLDFFIPNVKNGNSYNE

Specific function: Involved in DNA repair and recF pathway recombination

COG id: COG1381

COG function: function code L; Recombinational DNA repair protein (RecF pathway)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the recO family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RECO_OCEIH (Q8CXD4)

Other databases:

- EMBL:   BA000028
- RefSeq:   NP_692871.1
- GeneID:   1018427
- GenomeReviews:   BA000028_GR
- KEGG:   oih:OB1950
- NMPDR:   fig|221109.1.peg.1950
- HOGENOM:   HBG634481
- OMA:   VMARGAK
- ProtClustDB:   PRK00085
- BioCyc:   OIHE221109:OB1950-MONOMER
- HAMAP:   MF_00201
- InterPro:   IPR001164
- InterPro:   IPR022572
- InterPro:   IPR016027
- InterPro:   IPR003717
- TIGRFAMs:   TIGR00613

Pfam domain/function: PF02565 RecO; PF11967 RecO_N; SSF57863 ArfGAP; SSF50249 Nucleic_acid_OB

EC number: NA

Molecular weight: Translated: 29961; Mature: 29961

Theoretical pI: Translated: 8.95; Mature: 8.95

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLEKIDGIIIKTKDYGETHKLVTIFSNKIGKFNALAKGAKKPKSRMAAVTQPFINARFFV
CCCCCCCEEEEECCCCCHHHHHHHHHCCCCHHHHHHHCCCCHHHHHHHHHHHHHCCEEEE
YIGSGLSTIQQGEVLDSFRIIREDIFKTAYVSYMAELTDKLLDAKENDPFLYEQFYQTLL
EECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH
WINNQDEVDIPVIMYELKLYKKAGFAPVLHQCSRCGNQEGLSKFSIREGGMLCQQCAYFD
CCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCHHHHHHCCCHHHHHHHCCC
PEAIHISEKLSRLLYLFSEVDLKRIGNIRMKKENVQLIRKILYEYYDQYGGFWIKSRKVL
CHHHHHHHHHHHHHHHHHHHHHHHHCCCEECHHHHHHHHHHHHHHHHHHCCEEEEHHHHH
DQLDFFIPNVKNGNSYNE
HHHHHHCCCCCCCCCCCC
>Mature Secondary Structure
MLEKIDGIIIKTKDYGETHKLVTIFSNKIGKFNALAKGAKKPKSRMAAVTQPFINARFFV
CCCCCCCEEEEECCCCCHHHHHHHHHCCCCHHHHHHHCCCCHHHHHHHHHHHHHCCEEEE
YIGSGLSTIQQGEVLDSFRIIREDIFKTAYVSYMAELTDKLLDAKENDPFLYEQFYQTLL
EECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH
WINNQDEVDIPVIMYELKLYKKAGFAPVLHQCSRCGNQEGLSKFSIREGGMLCQQCAYFD
CCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCHHHHHHCCCHHHHHHHCCC
PEAIHISEKLSRLLYLFSEVDLKRIGNIRMKKENVQLIRKILYEYYDQYGGFWIKSRKVL
CHHHHHHHHHHHHHHHHHHHHHHHHCCCEECHHHHHHHHHHHHHHHHHHCCEEEEHHHHH
DQLDFFIPNVKNGNSYNE
HHHHHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12235376