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The map label for this gene is xylR [C]

Identifier: 23098233

GI number: 23098233

Start: 833182

End: 834735

Strand: Direct

Name: xylR [C]

Synonym: OB0778

Alternate gene names: 23098233

Gene position: 833182-834735 (Clockwise)

Preceding gene: 23098232

Following gene: 23098234

Centisome position: 22.95

GC content: 32.3

Gene sequence:

>1554_bases
ATGTCGTCTTACAGAATATTGATTGTCGATGATGAACCGATAATTCGATTAGGTCTTCAACAAACTATACCTTGGGAGAA
ATATCAGATAGAAAAGGTCGAGATAGCTTGTGATGGATTGGATGCCATTCGAAAAATAGACGGGTTGGGCGGTATTGACC
TTGTGTTATCTGATGTCCGTATGCCGAACATGGATGGATTACAATTAGCATCTTATTTACACAAAAACCATCCACAAACA
AAAACGATGTTAATTAGTGGATATGATGAGTTCGCATACGCAAAAAAAGCAATTCAGTCAGGTGTAAAGGATTATTTATT
AAAACCGGTGGATATAAATGAATTGGAATCCAAAGTGAATAGCCTTGTAAAAGAACTTGAAGCAGAACAACATGTGAAAA
ACAAAACTAGACAAAAGGAAATAAGGAATATTATTTTTCAACAGATTTATCATTTCCCAGAGGAAACGATAAGTGTTAAT
AGATATCCAGATATAAAGATTTATCCATTTATCAGTACGCTAAAATATGGTAAAAAAATTAATCAACTATCTGAACAAGG
TCTAACATTCTTTAATCAACAATGGAAGGACACGATAAATCAGGCGACGGAAATGCTTGGATTTGACGCTGAATCGATTT
TTGTTCATCGCAATCAATTGCTTACCTGTTTGATACAGCCAATAGATTCTCAAATTAATCCAATTGAGGTAGCTGAATTA
ATCACTCATAAACATTCTTTTTCTTTTATATGGAGTGATTCAGTTATTAATGTGACGGATTTAAAAGCCAAATATAATCA
ACTAAAGACTATCCACAACTATTTACCCTTAATTAGAGAACATGATGTTATTTTTTCCAATTATCAAATGGACCGTTCTG
ATATGCAAGCTTACCCTTACGAAATAGAGAGGGAATTGATAGAAACGTTATTCCGTAGAAAACCATTACAACATAATCAA
GTAGAAAAATGGATAACTACTTTATTTGACTATTTTCGAAGACATTCATTTCTACTTCAAGAAGTACAAGACGTGTGCAA
CCATATGTTAAAGGTGATTATGAAGGAATATGAAGCACTACTTGGTGAAATATCAGTAAAGTTAGATTGTCATTTCTTAA
ATGATGTGGATCTATTCCTTTATAATTCTTATTCATCAATACAGTATTTATTTGAGCAGGATTTGGAGCTAATTATGAAA
AAGCTGGCTCATCATAAGCTGGAAAAAGCGGATTGGCTAATAAAACAGGCGGAGAGATACATCAATGAATATTTTCGCAC
AACAATAAAAGTTCAAGAAGTTGCGGATGTCATAAATGTATCATCCAATTATTTCAGTACTCTTTTTAAACAGAAAACAG
GAGAAAATTTTAATGAATATGTCAATAAATTAAGAGTAGAAGAAGCTAAATCATTGCTTATAAATACCCCTTTCAAAGTA
AGTGAAATCTCAATACAAGTAGGCTTTCAAGAATATAAATATTTTGTCAGTGTGTTCAAGAAGTTTTCTGGATTGACTCC
AACGAATTACCGAAAATTAACTGCAATTGAATAG

Upstream 100 bases:

>100_bases
ACTTTATGGACTAACTATTTTGGATTCAGATGAAGGTGCATTTCTTCGCATGATCTTACCACTATTAAATGAGGATAAAT
CAAAAGAATTAGGTGATTAG

Downstream 100 bases:

>100_bases
AAGCTATAAAGGAGGAAGTTTGAATGGAAAATGTAACAATAAAGGTGCCGAATAATTTTATGTTAGGGGCAGCTGTTTCA
GCGTGGCAGACCGAGGGATG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 517; Mature: 516

Protein sequence:

>517_residues
MSSYRILIVDDEPIIRLGLQQTIPWEKYQIEKVEIACDGLDAIRKIDGLGGIDLVLSDVRMPNMDGLQLASYLHKNHPQT
KTMLISGYDEFAYAKKAIQSGVKDYLLKPVDINELESKVNSLVKELEAEQHVKNKTRQKEIRNIIFQQIYHFPEETISVN
RYPDIKIYPFISTLKYGKKINQLSEQGLTFFNQQWKDTINQATEMLGFDAESIFVHRNQLLTCLIQPIDSQINPIEVAEL
ITHKHSFSFIWSDSVINVTDLKAKYNQLKTIHNYLPLIREHDVIFSNYQMDRSDMQAYPYEIERELIETLFRRKPLQHNQ
VEKWITTLFDYFRRHSFLLQEVQDVCNHMLKVIMKEYEALLGEISVKLDCHFLNDVDLFLYNSYSSIQYLFEQDLELIMK
KLAHHKLEKADWLIKQAERYINEYFRTTIKVQEVADVINVSSNYFSTLFKQKTGENFNEYVNKLRVEEAKSLLINTPFKV
SEISIQVGFQEYKYFVSVFKKFSGLTPTNYRKLTAIE

Sequences:

>Translated_517_residues
MSSYRILIVDDEPIIRLGLQQTIPWEKYQIEKVEIACDGLDAIRKIDGLGGIDLVLSDVRMPNMDGLQLASYLHKNHPQT
KTMLISGYDEFAYAKKAIQSGVKDYLLKPVDINELESKVNSLVKELEAEQHVKNKTRQKEIRNIIFQQIYHFPEETISVN
RYPDIKIYPFISTLKYGKKINQLSEQGLTFFNQQWKDTINQATEMLGFDAESIFVHRNQLLTCLIQPIDSQINPIEVAEL
ITHKHSFSFIWSDSVINVTDLKAKYNQLKTIHNYLPLIREHDVIFSNYQMDRSDMQAYPYEIERELIETLFRRKPLQHNQ
VEKWITTLFDYFRRHSFLLQEVQDVCNHMLKVIMKEYEALLGEISVKLDCHFLNDVDLFLYNSYSSIQYLFEQDLELIMK
KLAHHKLEKADWLIKQAERYINEYFRTTIKVQEVADVINVSSNYFSTLFKQKTGENFNEYVNKLRVEEAKSLLINTPFKV
SEISIQVGFQEYKYFVSVFKKFSGLTPTNYRKLTAIE
>Mature_516_residues
SSYRILIVDDEPIIRLGLQQTIPWEKYQIEKVEIACDGLDAIRKIDGLGGIDLVLSDVRMPNMDGLQLASYLHKNHPQTK
TMLISGYDEFAYAKKAIQSGVKDYLLKPVDINELESKVNSLVKELEAEQHVKNKTRQKEIRNIIFQQIYHFPEETISVNR
YPDIKIYPFISTLKYGKKINQLSEQGLTFFNQQWKDTINQATEMLGFDAESIFVHRNQLLTCLIQPIDSQINPIEVAELI
THKHSFSFIWSDSVINVTDLKAKYNQLKTIHNYLPLIREHDVIFSNYQMDRSDMQAYPYEIERELIETLFRRKPLQHNQV
EKWITTLFDYFRRHSFLLQEVQDVCNHMLKVIMKEYEALLGEISVKLDCHFLNDVDLFLYNSYSSIQYLFEQDLELIMKK
LAHHKLEKADWLIKQAERYINEYFRTTIKVQEVADVINVSSNYFSTLFKQKTGENFNEYVNKLRVEEAKSLLINTPFKVS
EISIQVGFQEYKYFVSVFKKFSGLTPTNYRKLTAIE

Specific function: Probable member of the two-component regulatory system SE_0166/SE_0165 [H]

COG id: COG4753

COG function: function code T; Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

Organism=Escherichia coli, GI1789993, Length=105, Percent_Identity=35.2380952380952, Blast_Score=72, Evalue=8e-14,
Organism=Escherichia coli, GI1790391, Length=106, Percent_Identity=36.7924528301887, Blast_Score=72, Evalue=1e-13,
Organism=Escherichia coli, GI1787487, Length=116, Percent_Identity=37.0689655172414, Blast_Score=68, Evalue=1e-12,
Organism=Escherichia coli, GI1790299, Length=129, Percent_Identity=29.4573643410853, Blast_Score=67, Evalue=3e-12,
Organism=Escherichia coli, GI1788550, Length=140, Percent_Identity=30, Blast_Score=64, Evalue=3e-11,
Organism=Escherichia coli, GI1788905, Length=110, Percent_Identity=32.7272727272727, Blast_Score=63, Evalue=4e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018060
- InterPro:   IPR001789 [H]

Pfam domain/function: PF00165 HTH_AraC; PF00072 Response_reg [H]

EC number: NA

Molecular weight: Translated: 60893; Mature: 60762

Theoretical pI: Translated: 6.57; Mature: 6.57

Prosite motif: PS50110 RESPONSE_REGULATORY ; PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSYRILIVDDEPIIRLGLQQTIPWEKYQIEKVEIACDGLDAIRKIDGLGGIDLVLSDVR
CCCCEEEEECCCCHHHHCCHHCCCCCCEEEEEEEEEECCHHHHHHHCCCCCHHHHHHHCC
MPNMDGLQLASYLHKNHPQTKTMLISGYDEFAYAKKAIQSGVKDYLLKPVDINELESKVN
CCCCCHHHHHHHHHHCCCCCCEEEEECCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHH
SLVKELEAEQHVKNKTRQKEIRNIIFQQIYHFPEETISVNRYPDIKIYPFISTLKYGKKI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHEECCCCCCCEEEHHHHHHHHHHHH
NQLSEQGLTFFNQQWKDTINQATEMLGFDAESIFVHRNQLLTCLIQPIDSQINPIEVAEL
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH
ITHKHSFSFIWSDSVINVTDLKAKYNQLKTIHNYLPLIREHDVIFSNYQMDRSDMQAYPY
HHHCCCCEEEECCCEEEHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCHHHHHHCCH
EIERELIETLFRRKPLQHNQVEKWITTLFDYFRRHSFLLQEVQDVCNHMLKVIMKEYEAL
HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LGEISVKLDCHFLNDVDLFLYNSYSSIQYLFEQDLELIMKKLAHHKLEKADWLIKQAERY
HHHHEEEEEEEEECCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
INEYFRTTIKVQEVADVINVSSNYFSTLFKQKTGENFNEYVNKLRVEEAKSLLINTPFKV
HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCEE
SEISIQVGFQEYKYFVSVFKKFSGLTPTNYRKLTAIE
EEEEEEECHHHHHHHHHHHHHHCCCCCCCCCEEECCC
>Mature Secondary Structure 
SSYRILIVDDEPIIRLGLQQTIPWEKYQIEKVEIACDGLDAIRKIDGLGGIDLVLSDVR
CCCEEEEECCCCHHHHCCHHCCCCCCEEEEEEEEEECCHHHHHHHCCCCCHHHHHHHCC
MPNMDGLQLASYLHKNHPQTKTMLISGYDEFAYAKKAIQSGVKDYLLKPVDINELESKVN
CCCCCHHHHHHHHHHCCCCCCEEEEECCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHH
SLVKELEAEQHVKNKTRQKEIRNIIFQQIYHFPEETISVNRYPDIKIYPFISTLKYGKKI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHEECCCCCCCEEEHHHHHHHHHHHH
NQLSEQGLTFFNQQWKDTINQATEMLGFDAESIFVHRNQLLTCLIQPIDSQINPIEVAEL
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH
ITHKHSFSFIWSDSVINVTDLKAKYNQLKTIHNYLPLIREHDVIFSNYQMDRSDMQAYPY
HHHCCCCEEEECCCEEEHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCHHHHHHCCH
EIERELIETLFRRKPLQHNQVEKWITTLFDYFRRHSFLLQEVQDVCNHMLKVIMKEYEAL
HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LGEISVKLDCHFLNDVDLFLYNSYSSIQYLFEQDLELIMKKLAHHKLEKADWLIKQAERY
HHHHEEEEEEEEECCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
INEYFRTTIKVQEVADVINVSSNYFSTLFKQKTGENFNEYVNKLRVEEAKSLLINTPFKV
HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCEE
SEISIQVGFQEYKYFVSVFKKFSGLTPTNYRKLTAIE
EEEEEEECHHHHHHHHHHHHHHCCCCCCCCCEEECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 12950922 [H]