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The map label for this gene is ydcA [H]

Identifier: 23098073

GI number: 23098073

Start: 647086

End: 647862

Strand: Reverse

Name: ydcA [H]

Synonym: OB0618

Alternate gene names: 23098073

Gene position: 647862-647086 (Counterclockwise)

Preceding gene: 23098088

Following gene: 23098072

Centisome position: 17.84

GC content: 34.75

Gene sequence:

>777_bases
TTGTTTATACGTAATGAACGAAGTATTAAAGAGTTTATGAGTCTTTATCCTGTTGTTTCTGTATTAGTCATTATTAATAT
AACATTATGGGCTATTAATGATTTATTGCAATTACAAATCGGCAGGTTTATTGAAGTCTATGGAATTGGATTCAATGCAG
CAATTGAAGCTGGACAATGGTGGCGATTAATCACGCCGATTTTTCTTCACGGCGGATTAATGCACATGCTATTTAACTCA
TTTTCACTCGTATTGTTTGGACCAGCATTAGAACAAATGCTAGGAAGATTCAAATTTATTCTTGCTTATCTTGGCACTGC
AATTACCGCTAATATTGCTATATTCTTCCTACAACCAATGAGTTATGCTCATTTAGGAGCTTCTGGAGCAATTTTCGGGT
TATTTGGTATTTATGTATTCATGGTTATGTATCGAAAAGACTTAATCGATCAATCGAGCAGTCAAATGATAGCTGTCATT
GTCGGTATTGGATTAGTAATGACATTTATAAGACCTAATATTAGTATCCTTGGTCATCTTTTTGGATTTCTTAGTGGTAT
TATATATGCGCCATTATTATTAAAGAATGTAGCTAGCTACTCCCCTTGGATGAGACGTAGAACAAAGTTTGCTGCAGATG
ATGACGCTGTACAGTTTGACCCAAATCGTTGGCGAAGAAAAAAACGAATTCCACCATTTATTCGAAAAAACCTTCTTTGG
ATCATCATCGGATTTTTAGTTTTATTAGGGATACTTGGAAGAATGGGGATACTATGA

Upstream 100 bases:

>100_bases
CCTTATATTGGTCATAATTGATATAATTCCGTATTATAATGATAGTATTTCTTATAAGGTACTACTATTACCTATTATAC
ATGTATCGGGGGATTCCTCA

Downstream 100 bases:

>100_bases
AGAAACACGGCCTTGTTACGGCCGTGTTTCTTTACGTCTCAAGTTATTTATCTGTAGATAGTATATCCTCTACATTAATG
GTTTTAATTTAATATATAAC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 258; Mature: 258

Protein sequence:

>258_residues
MFIRNERSIKEFMSLYPVVSVLVIINITLWAINDLLQLQIGRFIEVYGIGFNAAIEAGQWWRLITPIFLHGGLMHMLFNS
FSLVLFGPALEQMLGRFKFILAYLGTAITANIAIFFLQPMSYAHLGASGAIFGLFGIYVFMVMYRKDLIDQSSSQMIAVI
VGIGLVMTFIRPNISILGHLFGFLSGIIYAPLLLKNVASYSPWMRRRTKFAADDDAVQFDPNRWRRKKRIPPFIRKNLLW
IIIGFLVLLGILGRMGIL

Sequences:

>Translated_258_residues
MFIRNERSIKEFMSLYPVVSVLVIINITLWAINDLLQLQIGRFIEVYGIGFNAAIEAGQWWRLITPIFLHGGLMHMLFNS
FSLVLFGPALEQMLGRFKFILAYLGTAITANIAIFFLQPMSYAHLGASGAIFGLFGIYVFMVMYRKDLIDQSSSQMIAVI
VGIGLVMTFIRPNISILGHLFGFLSGIIYAPLLLKNVASYSPWMRRRTKFAADDDAVQFDPNRWRRKKRIPPFIRKNLLW
IIIGFLVLLGILGRMGIL
>Mature_258_residues
MFIRNERSIKEFMSLYPVVSVLVIINITLWAINDLLQLQIGRFIEVYGIGFNAAIEAGQWWRLITPIFLHGGLMHMLFNS
FSLVLFGPALEQMLGRFKFILAYLGTAITANIAIFFLQPMSYAHLGASGAIFGLFGIYVFMVMYRKDLIDQSSSQMIAVI
VGIGLVMTFIRPNISILGHLFGFLSGIIYAPLLLKNVASYSPWMRRRTKFAADDDAVQFDPNRWRRKKRIPPFIRKNLLW
IIIGFLVLLGILGRMGIL

Specific function: Unknown

COG id: COG0705

COG function: function code R; Uncharacterized membrane protein (homolog of Drosophila rhomboid)

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase S54 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002610
- InterPro:   IPR022764 [H]

Pfam domain/function: PF01694 Rhomboid [H]

EC number: NA

Molecular weight: Translated: 29358; Mature: 29358

Theoretical pI: Translated: 10.80; Mature: 10.80

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.7 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.7 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MFIRNERSIKEFMSLYPVVSVLVIINITLWAINDLLQLQIGRFIEVYGIGFNAAIEAGQW
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCCH
WRLITPIFLHGGLMHMLFNSFSLVLFGPALEQMLGRFKFILAYLGTAITANIAIFFLQPM
HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH
SYAHLGASGAIFGLFGIYVFMVMYRKDLIDQSSSQMIAVIVGIGLVMTFIRPNISILGHL
HHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHH
FGFLSGIIYAPLLLKNVASYSPWMRRRTKFAADDDAVQFDPNRWRRKKRIPPFIRKNLLW
HHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCCCCEEECCHHHHHHCCCCHHHHHHHHH
IIIGFLVLLGILGRMGIL
HHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9341680; 9384377 [H]