BacMap

Definition	Exiguobacterium sp. AT1b, complete genome.
Accession	NC_012673
Length	2,999,895

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The map label for this gene is cbpA [H]

Identifier: 229917966

GI number: 229917966

Start: 2198391

End: 2199260

Strand: Direct

Name: cbpA [H]

Synonym: EAT1b_2245

Alternate gene names: 229917966

Gene position: 2198391-2199260 (Clockwise)

Preceding gene: 229917965

Following gene: 229917967

Centisome position: 73.28

GC content: 52.18

Gene sequence:

>870_bases
ATGGCTAAAAACTATTACGATGAGCTCGGTGTCTCCAAGGAAGCGAGCGAGCAAGAGATTAAACGTGCATACCGGAAACT
GGCGAAACAGTACCATCCGGACGTCAATAAAGACCCTGGCGCACAAGAACGATTCAAGTCGGTCCAGGAAGCGTTTGACG
TATTGAGCGACCCAGAGAAAAAGGCGAACTATGATCGATACGGTAGCCCGGATGGACCGTCGTTCGGACAAGGGTTCGGT
GGCGGTGGAGAGACTTACGGGGAAGGCTCGTCACAATTCGAAGATCTATTCCGACAATTCGGAGGCGGATCGCGTACGAC
CTCTCGGACTTTCGGATTTGAAGATATGTTCGGAAGCTTCTTTGACCAAGCAGTCGAGGAAGACTTGGATGAGACTGTTC
GTGTCAACATCCCGCTCAGTCAATTGACGAAAGAGTCGAAAGTGAGTCTGCGTCTTCAAACGGGTACCGTGAACGTCAAG
ATTCCACAAGGTGCCTACGAAGGTCAGAAGTTGCGGTTGAAAGGAAAAGGTAGCCGCGTCGGACAGTCAGGAAACCGAGG
AGATGTATATGTCGAACTTCACTTTGCGGATGACGATACGTATCGTCGTGAAGGAGAGCATATCGTGACCGTGAAACGAT
TGCGTCCGCTTGAATTTTTAGACGGGGCGAGCGTCATCATTGCCACGCTCGACGGGGGACGCGTGAAGCTGAAAGTGAAA
CCGGGAAGCCGTCCGGGACAACGGATGCGGATTCCTGGTCGCGGTGTCATGACCGGCTCGAAGGTGCGGTCGGACTTATT
CGTCCAACTCGAGGTCGACCTGCCTCTTGATGAGACGTACCGTTCTGTTTATGAGCAAATCGAACGTTAA

Upstream 100 bases:

>100_bases
TTTCGTATGAAAAGTGAAAGGATAATCTTTGACCTTATTTGACCAAATGAGTAGAATAGAGTTAACAGAAACGGGAAAGG
GATAGGTGAGGTGAATCCAT

Downstream 100 bases:

>100_bases
TGGATAAGGAGGAATCGTGATGGACTTTAATCGTTTTACAGATAAAGCACATGAATGCATTGTCAGTTCACAGGCGTTAG
CGAAACAATATCATCATAGT

Product: heat shock protein DnaJ domain protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 289; Mature: 288

Protein sequence:

>289_residues
MAKNYYDELGVSKEASEQEIKRAYRKLAKQYHPDVNKDPGAQERFKSVQEAFDVLSDPEKKANYDRYGSPDGPSFGQGFG
GGGETYGEGSSQFEDLFRQFGGGSRTTSRTFGFEDMFGSFFDQAVEEDLDETVRVNIPLSQLTKESKVSLRLQTGTVNVK
IPQGAYEGQKLRLKGKGSRVGQSGNRGDVYVELHFADDDTYRREGEHIVTVKRLRPLEFLDGASVIIATLDGGRVKLKVK
PGSRPGQRMRIPGRGVMTGSKVRSDLFVQLEVDLPLDETYRSVYEQIER

Sequences:

>Translated_289_residues
MAKNYYDELGVSKEASEQEIKRAYRKLAKQYHPDVNKDPGAQERFKSVQEAFDVLSDPEKKANYDRYGSPDGPSFGQGFG
GGGETYGEGSSQFEDLFRQFGGGSRTTSRTFGFEDMFGSFFDQAVEEDLDETVRVNIPLSQLTKESKVSLRLQTGTVNVK
IPQGAYEGQKLRLKGKGSRVGQSGNRGDVYVELHFADDDTYRREGEHIVTVKRLRPLEFLDGASVIIATLDGGRVKLKVK
PGSRPGQRMRIPGRGVMTGSKVRSDLFVQLEVDLPLDETYRSVYEQIER
>Mature_288_residues
AKNYYDELGVSKEASEQEIKRAYRKLAKQYHPDVNKDPGAQERFKSVQEAFDVLSDPEKKANYDRYGSPDGPSFGQGFGG
GGETYGEGSSQFEDLFRQFGGGSRTTSRTFGFEDMFGSFFDQAVEEDLDETVRVNIPLSQLTKESKVSLRLQTGTVNVKI
PQGAYEGQKLRLKGKGSRVGQSGNRGDVYVELHFADDDTYRREGEHIVTVKRLRPLEFLDGASVIIATLDGGRVKLKVKP
GSRPGQRMRIPGRGVMTGSKVRSDLFVQLEVDLPLDETYRSVYEQIER

Specific function: DNA-binding protein that preferentially recognizes a curved DNA sequence. It is probably a functional analog of DnaJ; displays overlapping activities with DnaJ, but functions under different conditions, probably acting as a molecular chaperone in an adapt

COG id: COG2214

COG function: function code O; DnaJ-class molecular chaperone

Gene ontology:

Cell location: Cytoplasm, nucleoid [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 J domain [H]

Homologues:

Organism=Homo sapiens, GI5453690, Length=339, Percent_Identity=30.0884955752212, Blast_Score=130, Evalue=2e-30,
Organism=Homo sapiens, GI6631085, Length=321, Percent_Identity=30.5295950155763, Blast_Score=118, Evalue=6e-27,
Organism=Homo sapiens, GI201862587, Length=345, Percent_Identity=28.695652173913, Blast_Score=105, Evalue=4e-23,
Organism=Homo sapiens, GI201862518, Length=345, Percent_Identity=28.695652173913, Blast_Score=105, Evalue=4e-23,
Organism=Homo sapiens, GI56549115, Length=345, Percent_Identity=28.695652173913, Blast_Score=105, Evalue=5e-23,
Organism=Homo sapiens, GI205360840, Length=306, Percent_Identity=32.0261437908497, Blast_Score=91, Evalue=1e-18,
Organism=Homo sapiens, GI205360838, Length=306, Percent_Identity=32.0261437908497, Blast_Score=91, Evalue=1e-18,
Organism=Homo sapiens, GI194306642, Length=115, Percent_Identity=41.7391304347826, Blast_Score=91, Evalue=2e-18,
Organism=Homo sapiens, GI194306640, Length=115, Percent_Identity=41.7391304347826, Blast_Score=91, Evalue=2e-18,
Organism=Homo sapiens, GI9558755, Length=119, Percent_Identity=42.0168067226891, Blast_Score=89, Evalue=4e-18,
Organism=Homo sapiens, GI39204547, Length=302, Percent_Identity=25.4966887417219, Blast_Score=89, Evalue=4e-18,
Organism=Homo sapiens, GI22749377, Length=67, Percent_Identity=55.2238805970149, Blast_Score=85, Evalue=8e-17,
Organism=Homo sapiens, GI72534740, Length=115, Percent_Identity=40.8695652173913, Blast_Score=84, Evalue=1e-16,
Organism=Homo sapiens, GI56687498, Length=63, Percent_Identity=53.968253968254, Blast_Score=84, Evalue=1e-16,
Organism=Homo sapiens, GI194328760, Length=292, Percent_Identity=27.7397260273973, Blast_Score=79, Evalue=4e-15,
Organism=Homo sapiens, GI194328758, Length=292, Percent_Identity=27.7397260273973, Blast_Score=79, Evalue=4e-15,
Organism=Homo sapiens, GI5031741, Length=63, Percent_Identity=60.3174603174603, Blast_Score=79, Evalue=6e-15,
Organism=Homo sapiens, GI4504511, Length=292, Percent_Identity=27.7397260273973, Blast_Score=77, Evalue=2e-14,
Organism=Homo sapiens, GI23503241, Length=109, Percent_Identity=44.0366972477064, Blast_Score=77, Evalue=2e-14,
Organism=Homo sapiens, GI68077168, Length=67, Percent_Identity=53.7313432835821, Blast_Score=76, Evalue=3e-14,
Organism=Homo sapiens, GI68077166, Length=67, Percent_Identity=53.7313432835821, Blast_Score=76, Evalue=3e-14,
Organism=Homo sapiens, GI27151736, Length=128, Percent_Identity=41.40625, Blast_Score=75, Evalue=8e-14,
Organism=Homo sapiens, GI88501736, Length=128, Percent_Identity=41.40625, Blast_Score=75, Evalue=1e-13,
Organism=Homo sapiens, GI7706495, Length=67, Percent_Identity=53.7313432835821, Blast_Score=73, Evalue=3e-13,
Organism=Homo sapiens, GI217035105, Length=70, Percent_Identity=47.1428571428571, Blast_Score=71, Evalue=1e-12,
Organism=Homo sapiens, GI47777312, Length=111, Percent_Identity=41.4414414414414, Blast_Score=70, Evalue=2e-12,
Organism=Homo sapiens, GI29126218, Length=65, Percent_Identity=50.7692307692308, Blast_Score=70, Evalue=3e-12,
Organism=Homo sapiens, GI4885495, Length=66, Percent_Identity=50, Blast_Score=69, Evalue=7e-12,
Organism=Homo sapiens, GI17388799, Length=66, Percent_Identity=50, Blast_Score=68, Evalue=1e-11,
Organism=Homo sapiens, GI21553335, Length=85, Percent_Identity=41.1764705882353, Blast_Score=67, Evalue=2e-11,
Organism=Homo sapiens, GI45504382, Length=65, Percent_Identity=47.6923076923077, Blast_Score=65, Evalue=6e-11,
Organism=Escherichia coli, GI1787235, Length=295, Percent_Identity=32.5423728813559, Blast_Score=150, Evalue=1e-37,
Organism=Escherichia coli, GI1786197, Length=351, Percent_Identity=27.9202279202279, Blast_Score=109, Evalue=2e-25,
Organism=Caenorhabditis elegans, GI17534355, Length=335, Percent_Identity=29.8507462686567, Blast_Score=116, Evalue=1e-26,
Organism=Caenorhabditis elegans, GI115532476, Length=66, Percent_Identity=51.5151515151515, Blast_Score=76, Evalue=3e-14,
Organism=Caenorhabditis elegans, GI17554644, Length=90, Percent_Identity=50, Blast_Score=76, Evalue=3e-14,
Organism=Caenorhabditis elegans, GI212645553, Length=67, Percent_Identity=52.2388059701493, Blast_Score=74, Evalue=8e-14,
Organism=Caenorhabditis elegans, GI17538236, Length=113, Percent_Identity=38.0530973451327, Blast_Score=71, Evalue=6e-13,
Organism=Caenorhabditis elegans, GI17553096, Length=63, Percent_Identity=50.7936507936508, Blast_Score=71, Evalue=7e-13,
Organism=Caenorhabditis elegans, GI17553098, Length=62, Percent_Identity=51.6129032258064, Blast_Score=71, Evalue=7e-13,
Organism=Caenorhabditis elegans, GI17507263, Length=62, Percent_Identity=50, Blast_Score=68, Evalue=5e-12,
Organism=Saccharomyces cerevisiae, GI6323119, Length=83, Percent_Identity=46.9879518072289, Blast_Score=77, Evalue=2e-15,
Organism=Saccharomyces cerevisiae, GI6322194, Length=84, Percent_Identity=48.8095238095238, Blast_Score=76, Evalue=5e-15,
Organism=Saccharomyces cerevisiae, GI6323870, Length=69, Percent_Identity=53.6231884057971, Blast_Score=76, Evalue=7e-15,
Organism=Saccharomyces cerevisiae, GI6323813, Length=108, Percent_Identity=48.1481481481481, Blast_Score=75, Evalue=8e-15,
Organism=Saccharomyces cerevisiae, GI6324265, Length=316, Percent_Identity=25, Blast_Score=75, Evalue=1e-14,
Organism=Saccharomyces cerevisiae, GI6324321, Length=63, Percent_Identity=55.5555555555556, Blast_Score=74, Evalue=4e-14,
Organism=Saccharomyces cerevisiae, GI6320888, Length=120, Percent_Identity=40, Blast_Score=73, Evalue=4e-14,
Organism=Saccharomyces cerevisiae, GI6324103, Length=69, Percent_Identity=47.8260869565217, Blast_Score=66, Evalue=5e-12,
Organism=Drosophila melanogaster, GI24658562, Length=328, Percent_Identity=28.9634146341463, Blast_Score=96, Evalue=4e-20,
Organism=Drosophila melanogaster, GI24658555, Length=328, Percent_Identity=28.9634146341463, Blast_Score=96, Evalue=4e-20,
Organism=Drosophila melanogaster, GI85726398, Length=123, Percent_Identity=45.5284552845528, Blast_Score=93, Evalue=2e-19,
Organism=Drosophila melanogaster, GI19920464, Length=307, Percent_Identity=25.4071661237785, Blast_Score=84, Evalue=1e-16,
Organism=Drosophila melanogaster, GI21358273, Length=67, Percent_Identity=59.7014925373134, Blast_Score=82, Evalue=3e-16,
Organism=Drosophila melanogaster, GI18858081, Length=343, Percent_Identity=25.0728862973761, Blast_Score=81, Evalue=8e-16,
Organism=Drosophila melanogaster, GI45549272, Length=69, Percent_Identity=55.0724637681159, Blast_Score=80, Evalue=1e-15,
Organism=Drosophila melanogaster, GI45552813, Length=69, Percent_Identity=55.0724637681159, Blast_Score=80, Evalue=1e-15,
Organism=Drosophila melanogaster, GI45552811, Length=69, Percent_Identity=55.0724637681159, Blast_Score=80, Evalue=2e-15,
Organism=Drosophila melanogaster, GI20129487, Length=94, Percent_Identity=44.6808510638298, Blast_Score=79, Evalue=2e-15,
Organism=Drosophila melanogaster, GI24584014, Length=94, Percent_Identity=44.6808510638298, Blast_Score=79, Evalue=2e-15,
Organism=Drosophila melanogaster, GI24668492, Length=68, Percent_Identity=47.0588235294118, Blast_Score=72, Evalue=3e-13,
Organism=Drosophila melanogaster, GI24586131, Length=64, Percent_Identity=45.3125, Blast_Score=70, Evalue=1e-12,
Organism=Drosophila melanogaster, GI24641698, Length=65, Percent_Identity=46.1538461538462, Blast_Score=70, Evalue=2e-12,
Organism=Drosophila melanogaster, GI24641696, Length=65, Percent_Identity=46.1538461538462, Blast_Score=70, Evalue=2e-12,
Organism=Drosophila melanogaster, GI17648033, Length=118, Percent_Identity=38.9830508474576, Blast_Score=70, Evalue=2e-12,
Organism=Drosophila melanogaster, GI24584630, Length=118, Percent_Identity=38.9830508474576, Blast_Score=69, Evalue=3e-12,
Organism=Drosophila melanogaster, GI24762799, Length=130, Percent_Identity=33.8461538461538, Blast_Score=69, Evalue=3e-12,
Organism=Drosophila melanogaster, GI24646562, Length=64, Percent_Identity=51.5625, Blast_Score=69, Evalue=4e-12,
Organism=Drosophila melanogaster, GI24646560, Length=64, Percent_Identity=51.5625, Blast_Score=69, Evalue=4e-12,
Organism=Drosophila melanogaster, GI24646558, Length=64, Percent_Identity=51.5625, Blast_Score=69, Evalue=4e-12,
Organism=Drosophila melanogaster, GI24646556, Length=64, Percent_Identity=51.5625, Blast_Score=69, Evalue=4e-12,
Organism=Drosophila melanogaster, GI21357547, Length=64, Percent_Identity=51.5625, Blast_Score=69, Evalue=4e-12,
Organism=Drosophila melanogaster, GI24654066, Length=67, Percent_Identity=49.2537313432836, Blast_Score=68, Evalue=6e-12,
Organism=Drosophila melanogaster, GI24654070, Length=67, Percent_Identity=49.2537313432836, Blast_Score=68, Evalue=6e-12,
Organism=Drosophila melanogaster, GI24654068, Length=67, Percent_Identity=49.2537313432836, Blast_Score=68, Evalue=6e-12,
Organism=Drosophila melanogaster, GI24654072, Length=67, Percent_Identity=49.2537313432836, Blast_Score=68, Evalue=6e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002939
- InterPro:   IPR001623
- InterPro:   IPR018253
- InterPro:   IPR008971
- InterPro:   IPR015609
- InterPro:   IPR003095 [H]

Pfam domain/function: PF00226 DnaJ; PF01556 DnaJ_C [H]

EC number: NA

Molecular weight: Translated: 32345; Mature: 32214

Theoretical pI: Translated: 6.83; Mature: 6.83

Prosite motif: PS00636 DNAJ_1 ; PS50076 DNAJ_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAKNYYDELGVSKEASEQEIKRAYRKLAKQYHPDVNKDPGAQERFKSVQEAFDVLSDPEK
CCCCCHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCHH
KANYDRYGSPDGPSFGQGFGGGGETYGEGSSQFEDLFRQFGGGSRTTSRTFGFEDMFGSF
HCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHH
FDQAVEEDLDETVRVNIPLSQLTKESKVSLRLQTGTVNVKIPQGAYEGQKLRLKGKGSRV
HHHHHHHHCCCEEEEECCHHHHCCCCCEEEEEEECEEEEEECCCCCCCCEEEEECCCCCC
GQSGNRGDVYVELHFADDDTYRREGEHIVTVKRLRPLEFLDGASVIIATLDGGRVKLKVK
CCCCCCCEEEEEEEECCCCHHHHCCCEEEEEECCCCHHHCCCCEEEEEEECCCEEEEEEC
PGSRPGQRMRIPGRGVMTGSKVRSDLFVQLEVDLPLDETYRSVYEQIER
CCCCCCCEEECCCCCCCCHHHHCCEEEEEEEECCCCCHHHHHHHHHHCC
>Mature Secondary Structure 
AKNYYDELGVSKEASEQEIKRAYRKLAKQYHPDVNKDPGAQERFKSVQEAFDVLSDPEK
CCCCHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCHH
KANYDRYGSPDGPSFGQGFGGGGETYGEGSSQFEDLFRQFGGGSRTTSRTFGFEDMFGSF
HCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHH
FDQAVEEDLDETVRVNIPLSQLTKESKVSLRLQTGTVNVKIPQGAYEGQKLRLKGKGSRV
HHHHHHHHCCCEEEEECCHHHHCCCCCEEEEEEECEEEEEECCCCCCCCEEEEECCCCCC
GQSGNRGDVYVELHFADDDTYRREGEHIVTVKRLRPLEFLDGASVIIATLDGGRVKLKVK
CCCCCCCEEEEEEEECCCCHHHHCCCEEEEEECCCCHHHCCCCEEEEEEECCCEEEEEEC
PGSRPGQRMRIPGRGVMTGSKVRSDLFVQLEVDLPLDETYRSVYEQIER
CCCCCCCEEECCCCCCCCHHHHCCEEEEEEEECCCCCHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA