| Definition | Exiguobacterium sp. AT1b, complete genome. |
|---|---|
| Accession | NC_012673 |
| Length | 2,999,895 |
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The map label for this gene is cdr [H]
Identifier: 229917771
GI number: 229917771
Start: 2001240
End: 2003705
Strand: Direct
Name: cdr [H]
Synonym: EAT1b_2049
Alternate gene names: 229917771
Gene position: 2001240-2003705 (Clockwise)
Preceding gene: 229917770
Following gene: 229917772
Centisome position: 66.71
GC content: 51.01
Gene sequence:
>2466_bases ATGAGTAAAAAAATCGTAATCGTCGGTGGGGTGGCAGGTGGTGCATCTGCAGCTGCACGACTCCGTCGTTTGAATGAAGA GAATCACATCGTCATGTTCGACCGTGGAGAGTACATCTCGTTCGCGAACTGTGGTCTTCCATATTATATCGGGGACGTTA TCCAAGACCGTCAAAAACTCCTCGTTCAAACCGTTGAAGGGATGAACAAGCGTTTCCAACTCGATATCCGCAATTTGACG GAAGTCGTCAAAATCAACCGTGACGAGAAAACGGTGACGGTGAAACACGTCCAAACAGGCGAAACGTATGACGAGTCATA CGACGTCCTCATCTTGTCACCGGGAGCAAAACCGATTCGTCCAAACATCCCTGGAATCGACGAGGCAGAAGATATCTTCA CACTTCGCAACATTCCGGATACAGATAAAATCCGTGGCTACGTCGATGACAAGGCACCAAAGCATGCGACTGTAATCGGT GGAGGTTTCATCGGGATCGAGATGGCAGAAAACTTACGTGAGCGTGGCGTTGAGGTGACGCTCGTTGAGATGGCAGACCA AGTCATGACGCCACTTGACCGTGAGATGGTGGCGCCAATTCATGAACACATGCGCTTGCATGGCGTCGAGCTTCAATTGT CTGATGGTGTTTCTTCATTCTCTGAAAAAGGGAAGAAGGTGCATTTGACGAGCGGTCGTGTCATCGATACAGATATGGTC ATCATGTCGATTGGGGTTACACCAGAGTCGACGATTGCGCGTGAAGCAGGCCTTGAAACAGGTACGCGCGGGGCAATCCG AGTAAACGAAAAAATGATGACATCTGACCCGTCGATTTACGCGATCGGGGACGCGGTCGAAGTACTCGACTATGTCTTCC ATGAGCCAACTGTCGTCCCACTCGCATGGCCAGCGAACCGTCAAGGCCGTCTCGTTGCCGATATCATTAACGGTCGTGAC GTGAAATATAACGGAACGATGGGAACGGGAATCGCCAAAGTGTTTGATATGACGGTCGCATCGACAGGCTGGAATGAAAA ACGGTTGAAGGCGGCTGGTAAGACGTATGAAGCCGTCCACGTGCACCCCGGTTCACATGCCGGCTATTATCCAGGATCGA CACCTGTGTCACTCAAACTCTTGTTCCACCCGACAACGGGTGAGATCTATGGTGCGCAAGGCGTTGGGATCAATGGAGTC GACAAACGCATCGACGTCATTGCGACGGCGATGAAGGGCGGTTTGACAGTCCTCGATCTACCTGACCTTGAGCTCAGTTA CGCACCACCGTTCAGCTCGGCGAAAGATCCGGTCAATATGATCGGGTACGTCGCGTCGAACGTCGTCCTCGGTGACAATG AAGTCGTGCATTGGGATGAAATCGATGAGCTCGTGGAAAATGGAGCGACGTTATTAGACGTTCGCGATGAATCGGAGCAT GAACTCGGAAAGATTCCAGGGTCGATCAATGTACCACTCAACTCATTACGAGAAAACTTGGACAACTACGACCGGAATGA AACGATTTACGTGACGTGCCAAGTCGGTCTTCGTGGCTATCTCGCATCACGCATCTTACGTCAAAACGGCTTCAAGGTGA AAAACTTGAGCGGTGGCTACAAGACGTGGTCGCAAATCAATCGTGATTTCGAGGCGCTTGAAGAAGCGAACACATCAAAT GAAACAGCGGCTACCGTTGTAGAAGAGGAGCCAACACAAATGACAAATGCACCAATCGGGGAAGCGGTCGTGTTAGACAC ATGTGGTCTACAATGCCCGGGACCTATTTTAGAAGTGAATAAGAAAGTCGCAGAACTCGGAGAAGGCGAAACGCTCCGCG TGCTCGCGAGTGACCCAGGATTCTTCGCAGACATCGAAGCATGGGCGAAGAAGACAGGAAACAAACTCGTCTCGAAACAA TTCGTGAACGGACGCGTTGAAGCCATCCTTCAAAAAGGACAAGGTCCGGCTGTACCACAAGCGGGCGCGCCAGCAGGAGA CGGTGCATCAATGGTCGTCTTCAGCGGAGACCTCGACCGCGCACTCGCATCCCTCATCATTGCGCAAGGTGCTGCCGCGA TGGGGAAAGACGTGACGATGTTCTTTACATTCTGGGGACTCAACGTCATCCGCAAACCGGATGCGCCGGAAGTGAAGAAA CAAGGCCTTGAGAAAATGTTCGGCATGATGATGCCAGGACATGCCGGCGAACTTCCACTTTCGAATATGAACTTTGGTGG TGTCGGTCAAAAAATGATGAAGAAAGTCATGAGCGACAAGAATGTTCCTTCTGTCGAAGAAATGATCAAGTCGGCGCAAG AGGCAGGCGTAAAAATGGTAGCTTGCACGATGTCAATGGACGTCATGGGTATCAAAGAAGAAGAGTTGATTGATGGGGTC GACCTTGGTGGTGTGGCGGCGTATCTCGGCGCAGCAGAAGGCGGTAACTTAAACCTCTTTATCTAA
Upstream 100 bases:
>100_bases AAGCGACTTGGCAAATGGAGGCGAAAGGCTATAAAGTGGTCAATATAGAAGATGGCTTGATGAGTTGGCCAGGAGAAGTC GTCAGAGGAGGAAATGGACA
Downstream 100 bases:
>100_bases ACGGAATAGAAAACGAGTCGGATTGCGATGCGCTCTCCGGCTCGTTTTTTTTGCTTTTAGAAAGAGTCGAGGTGATATTG AAAAAACGAATTAATATTGC
Product: FAD-dependent pyridine nucleotide-disulphide oxidoreductase
Products: NA
Alternate protein names: CoA-disulfide reductase; CoADR [H]
Number of amino acids: Translated: 821; Mature: 820
Protein sequence:
>821_residues MSKKIVIVGGVAGGASAAARLRRLNEENHIVMFDRGEYISFANCGLPYYIGDVIQDRQKLLVQTVEGMNKRFQLDIRNLT EVVKINRDEKTVTVKHVQTGETYDESYDVLILSPGAKPIRPNIPGIDEAEDIFTLRNIPDTDKIRGYVDDKAPKHATVIG GGFIGIEMAENLRERGVEVTLVEMADQVMTPLDREMVAPIHEHMRLHGVELQLSDGVSSFSEKGKKVHLTSGRVIDTDMV IMSIGVTPESTIAREAGLETGTRGAIRVNEKMMTSDPSIYAIGDAVEVLDYVFHEPTVVPLAWPANRQGRLVADIINGRD VKYNGTMGTGIAKVFDMTVASTGWNEKRLKAAGKTYEAVHVHPGSHAGYYPGSTPVSLKLLFHPTTGEIYGAQGVGINGV DKRIDVIATAMKGGLTVLDLPDLELSYAPPFSSAKDPVNMIGYVASNVVLGDNEVVHWDEIDELVENGATLLDVRDESEH ELGKIPGSINVPLNSLRENLDNYDRNETIYVTCQVGLRGYLASRILRQNGFKVKNLSGGYKTWSQINRDFEALEEANTSN ETAATVVEEEPTQMTNAPIGEAVVLDTCGLQCPGPILEVNKKVAELGEGETLRVLASDPGFFADIEAWAKKTGNKLVSKQ FVNGRVEAILQKGQGPAVPQAGAPAGDGASMVVFSGDLDRALASLIIAQGAAAMGKDVTMFFTFWGLNVIRKPDAPEVKK QGLEKMFGMMMPGHAGELPLSNMNFGGVGQKMMKKVMSDKNVPSVEEMIKSAQEAGVKMVACTMSMDVMGIKEEELIDGV DLGGVAAYLGAAEGGNLNLFI
Sequences:
>Translated_821_residues MSKKIVIVGGVAGGASAAARLRRLNEENHIVMFDRGEYISFANCGLPYYIGDVIQDRQKLLVQTVEGMNKRFQLDIRNLT EVVKINRDEKTVTVKHVQTGETYDESYDVLILSPGAKPIRPNIPGIDEAEDIFTLRNIPDTDKIRGYVDDKAPKHATVIG GGFIGIEMAENLRERGVEVTLVEMADQVMTPLDREMVAPIHEHMRLHGVELQLSDGVSSFSEKGKKVHLTSGRVIDTDMV IMSIGVTPESTIAREAGLETGTRGAIRVNEKMMTSDPSIYAIGDAVEVLDYVFHEPTVVPLAWPANRQGRLVADIINGRD VKYNGTMGTGIAKVFDMTVASTGWNEKRLKAAGKTYEAVHVHPGSHAGYYPGSTPVSLKLLFHPTTGEIYGAQGVGINGV DKRIDVIATAMKGGLTVLDLPDLELSYAPPFSSAKDPVNMIGYVASNVVLGDNEVVHWDEIDELVENGATLLDVRDESEH ELGKIPGSINVPLNSLRENLDNYDRNETIYVTCQVGLRGYLASRILRQNGFKVKNLSGGYKTWSQINRDFEALEEANTSN ETAATVVEEEPTQMTNAPIGEAVVLDTCGLQCPGPILEVNKKVAELGEGETLRVLASDPGFFADIEAWAKKTGNKLVSKQ FVNGRVEAILQKGQGPAVPQAGAPAGDGASMVVFSGDLDRALASLIIAQGAAAMGKDVTMFFTFWGLNVIRKPDAPEVKK QGLEKMFGMMMPGHAGELPLSNMNFGGVGQKMMKKVMSDKNVPSVEEMIKSAQEAGVKMVACTMSMDVMGIKEEELIDGV DLGGVAAYLGAAEGGNLNLFI >Mature_820_residues SKKIVIVGGVAGGASAAARLRRLNEENHIVMFDRGEYISFANCGLPYYIGDVIQDRQKLLVQTVEGMNKRFQLDIRNLTE VVKINRDEKTVTVKHVQTGETYDESYDVLILSPGAKPIRPNIPGIDEAEDIFTLRNIPDTDKIRGYVDDKAPKHATVIGG GFIGIEMAENLRERGVEVTLVEMADQVMTPLDREMVAPIHEHMRLHGVELQLSDGVSSFSEKGKKVHLTSGRVIDTDMVI MSIGVTPESTIAREAGLETGTRGAIRVNEKMMTSDPSIYAIGDAVEVLDYVFHEPTVVPLAWPANRQGRLVADIINGRDV KYNGTMGTGIAKVFDMTVASTGWNEKRLKAAGKTYEAVHVHPGSHAGYYPGSTPVSLKLLFHPTTGEIYGAQGVGINGVD KRIDVIATAMKGGLTVLDLPDLELSYAPPFSSAKDPVNMIGYVASNVVLGDNEVVHWDEIDELVENGATLLDVRDESEHE LGKIPGSINVPLNSLRENLDNYDRNETIYVTCQVGLRGYLASRILRQNGFKVKNLSGGYKTWSQINRDFEALEEANTSNE TAATVVEEEPTQMTNAPIGEAVVLDTCGLQCPGPILEVNKKVAELGEGETLRVLASDPGFFADIEAWAKKTGNKLVSKQF VNGRVEAILQKGQGPAVPQAGAPAGDGASMVVFSGDLDRALASLIIAQGAAAMGKDVTMFFTFWGLNVIRKPDAPEVKKQ GLEKMFGMMMPGHAGELPLSNMNFGGVGQKMMKKVMSDKNVPSVEEMIKSAQEAGVKMVACTMSMDVMGIKEEELIDGVD LGGVAAYLGAAEGGNLNLFI
Specific function: Catalyzes specifically the NADPH-dependent reduction of coenzyme A disulfide [H]
COG id: COG0446
COG function: function code R; Uncharacterized NAD(FAD)-dependent dehydrogenases
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the class-III pyridine nucleotide-disulfide oxidoreductase family [H]
Homologues:
Organism=Homo sapiens, GI226437568, Length=317, Percent_Identity=26.4984227129338, Blast_Score=99, Evalue=2e-20, Organism=Homo sapiens, GI65787454, Length=317, Percent_Identity=26.4984227129338, Blast_Score=99, Evalue=2e-20, Organism=Homo sapiens, GI21389617, Length=317, Percent_Identity=26.4984227129338, Blast_Score=99, Evalue=2e-20, Organism=Escherichia coli, GI87082354, Length=338, Percent_Identity=28.698224852071, Blast_Score=94, Evalue=4e-20, Organism=Escherichia coli, GI1788892, Length=296, Percent_Identity=28.3783783783784, Blast_Score=88, Evalue=3e-18, Organism=Escherichia coli, GI1789765, Length=283, Percent_Identity=27.9151943462898, Blast_Score=86, Evalue=9e-18, Organism=Escherichia coli, GI1786307, Length=309, Percent_Identity=27.831715210356, Blast_Score=84, Evalue=5e-17, Organism=Escherichia coli, GI1789065, Length=291, Percent_Identity=26.8041237113402, Blast_Score=83, Evalue=9e-17, Organism=Escherichia coli, GI1789915, Length=344, Percent_Identity=23.8372093023256, Blast_Score=64, Evalue=4e-11, Organism=Caenorhabditis elegans, GI17559934, Length=225, Percent_Identity=28.4444444444444, Blast_Score=82, Evalue=1e-15, Organism=Drosophila melanogaster, GI21358499, Length=217, Percent_Identity=30.4147465437788, Blast_Score=70, Evalue=8e-12, Organism=Drosophila melanogaster, GI24585130, Length=293, Percent_Identity=22.8668941979522, Blast_Score=67, Evalue=6e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR017758 - InterPro: IPR016156 - InterPro: IPR013027 - InterPro: IPR004099 - InterPro: IPR001327 [H]
Pfam domain/function: PF00070 Pyr_redox; PF07992 Pyr_redox_2; PF02852 Pyr_redox_dim [H]
EC number: =1.8.1.14 [H]
Molecular weight: Translated: 88825; Mature: 88694
Theoretical pI: Translated: 4.85; Mature: 4.85
Prosite motif: PS50206 RHODANESE_3 ; PS01148 UPF0033
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 4.0 %Met (Translated Protein) 4.6 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 3.9 %Met (Mature Protein) 4.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSKKIVIVGGVAGGASAAARLRRLNEENHIVMFDRGEYISFANCGLPYYIGDVIQDRQKL CCCEEEEEECCCCCHHHHHHHHHCCCCCCEEEEECCCEEEEECCCCCHHHHHHHHHHHHH LVQTVEGMNKRFQLDIRNLTEVVKINRDEKTVTVKHVQTGETYDESYDVLILSPGAKPIR HHHHHHCCCCEEEEEHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCCCEEEECCCCCCCC PNIPGIDEAEDIFTLRNIPDTDKIRGYVDDKAPKHATVIGGGFIGIEMAENLRERGVEVT CCCCCCCCHHHHHEECCCCCHHHHCEEECCCCCCCEEEEECCEEEHHHHHHHHHCCCEEE LVEMADQVMTPLDREMVAPIHEHMRLHGVELQLSDGVSSFSEKGKKVHLTSGRVIDTDMV EHHHHHHHHCCCCHHHHHHHHHHHHEECEEEEECCCHHHHHHCCCEEEEECCCEEECCEE IMSIGVTPESTIAREAGLETGTRGAIRVNEKMMTSDPSIYAIGDAVEVLDYVFHEPTVVP EEEECCCCCHHHHHHCCCCCCCCCEEEECCCCCCCCCCEEEECHHHHHHHHHHCCCEEEE LAWPANRQGRLVADIINGRDVKYNGTMGTGIAKVFDMTVASTGWNEKRLKAAGKTYEAVH EECCCCCCCCEEEEECCCCEEEECCCCCCHHHHHHHHHHHCCCCCHHHHHHCCCCEEEEE VHPGSHAGYYPGSTPVSLKLLFHPTTGEIYGAQGVGINGVDKRIDVIATAMKGGLTVLDL ECCCCCCCCCCCCCCEEEEEEEECCCCCEECCCCCCCCCHHHHHHHHHHHHHCCEEEEEC PDLELSYAPPFSSAKDPVNMIGYVASNVVLGDNEVVHWDEIDELVENGATLLDVRDESEH CCCCEECCCCCCCCCCHHHHHHHHHCCEEECCCCEEEHHHHHHHHHCCCEEEEECCCCCH ELGKIPGSINVPLNSLRENLDNYDRNETIYVTCQVGLRGYLASRILRQNGFKVKNLSGGY HHHCCCCCCCCCHHHHHHHHHCCCCCCEEEEEEECCHHHHHHHHHHHHCCCEEEECCCCH KTWSQINRDFEALEEANTSNETAATVVEEEPTQMTNAPIGEAVVLDTCGLQCPGPILEVN HHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCHHCCCCCCCEEEEECCCCCCCCCHHHHH KKVAELGEGETLRVLASDPGFFADIEAWAKKTGNKLVSKQFVNGRVEAILQKGQGPAVPQ HHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHCHHHHHHHHHCHHHHHHHHCCCCCCCCC AGAPAGDGASMVVFSGDLDRALASLIIAQGAAAMGKDVTMFFTFWGLNVIRKPDAPEVKK CCCCCCCCCEEEEECCCHHHHHHHHHHHCCCHHCCCCEEEEEEEECCCEEECCCCCHHHH QGLEKMFGMMMPGHAGELPLSNMNFGGVGQKMMKKVMSDKNVPSVEEMIKSAQEAGVKMV HHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHCCCEEE ACTMSMDVMGIKEEELIDGVDLGGVAAYLGAAEGGNLNLFI EEEECCCCCCCCHHHHHCCCCCCHHHHHHCCCCCCCEEEEC >Mature Secondary Structure SKKIVIVGGVAGGASAAARLRRLNEENHIVMFDRGEYISFANCGLPYYIGDVIQDRQKL CCEEEEEECCCCCHHHHHHHHHCCCCCCEEEEECCCEEEEECCCCCHHHHHHHHHHHHH LVQTVEGMNKRFQLDIRNLTEVVKINRDEKTVTVKHVQTGETYDESYDVLILSPGAKPIR HHHHHHCCCCEEEEEHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCCCEEEECCCCCCCC PNIPGIDEAEDIFTLRNIPDTDKIRGYVDDKAPKHATVIGGGFIGIEMAENLRERGVEVT CCCCCCCCHHHHHEECCCCCHHHHCEEECCCCCCCEEEEECCEEEHHHHHHHHHCCCEEE LVEMADQVMTPLDREMVAPIHEHMRLHGVELQLSDGVSSFSEKGKKVHLTSGRVIDTDMV EHHHHHHHHCCCCHHHHHHHHHHHHEECEEEEECCCHHHHHHCCCEEEEECCCEEECCEE IMSIGVTPESTIAREAGLETGTRGAIRVNEKMMTSDPSIYAIGDAVEVLDYVFHEPTVVP EEEECCCCCHHHHHHCCCCCCCCCEEEECCCCCCCCCCEEEECHHHHHHHHHHCCCEEEE LAWPANRQGRLVADIINGRDVKYNGTMGTGIAKVFDMTVASTGWNEKRLKAAGKTYEAVH EECCCCCCCCEEEEECCCCEEEECCCCCCHHHHHHHHHHHCCCCCHHHHHHCCCCEEEEE VHPGSHAGYYPGSTPVSLKLLFHPTTGEIYGAQGVGINGVDKRIDVIATAMKGGLTVLDL ECCCCCCCCCCCCCCEEEEEEEECCCCCEECCCCCCCCCHHHHHHHHHHHHHCCEEEEEC PDLELSYAPPFSSAKDPVNMIGYVASNVVLGDNEVVHWDEIDELVENGATLLDVRDESEH CCCCEECCCCCCCCCCHHHHHHHHHCCEEECCCCEEEHHHHHHHHHCCCEEEEECCCCCH ELGKIPGSINVPLNSLRENLDNYDRNETIYVTCQVGLRGYLASRILRQNGFKVKNLSGGY HHHCCCCCCCCCHHHHHHHHHCCCCCCEEEEEEECCHHHHHHHHHHHHCCCEEEECCCCH KTWSQINRDFEALEEANTSNETAATVVEEEPTQMTNAPIGEAVVLDTCGLQCPGPILEVN HHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCHHCCCCCCCEEEEECCCCCCCCCHHHHH KKVAELGEGETLRVLASDPGFFADIEAWAKKTGNKLVSKQFVNGRVEAILQKGQGPAVPQ HHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHCHHHHHHHHHCHHHHHHHHCCCCCCCCC AGAPAGDGASMVVFSGDLDRALASLIIAQGAAAMGKDVTMFFTFWGLNVIRKPDAPEVKK CCCCCCCCCEEEEECCCHHHHHHHHHHHCCCHHCCCCEEEEEEEECCCEEECCCCCHHHH QGLEKMFGMMMPGHAGELPLSNMNFGGVGQKMMKKVMSDKNVPSVEEMIKSAQEAGVKMV HHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHCCCEEE ACTMSMDVMGIKEEELIDGVDLGGVAAYLGAAEGGNLNLFI EEEECCCCCCCCHHHHHCCCCCCHHHHHHCCCCCCCEEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA