| Definition | Exiguobacterium sp. AT1b, complete genome. |
|---|---|
| Accession | NC_012673 |
| Length | 2,999,895 |
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The map label for this gene is 229917059
Identifier: 229917059
GI number: 229917059
Start: 1304421
End: 1304963
Strand: Reverse
Name: 229917059
Synonym: EAT1b_1333
Alternate gene names: NA
Gene position: 1304963-1304421 (Counterclockwise)
Preceding gene: 229917060
Following gene: 229917051
Centisome position: 43.5
GC content: 53.22
Gene sequence:
>543_bases GTGAGTCAAATGAAGACGGAACTTCTCGGATTTTTGACGGAGCTTCACGAACGGTTCCCGTTGAATGATGAGCGCATTCT CGTCATCGGATGCTCGACGAGTGAAGTGCTCGGAAAAACGATTGGGAAGGCAGGTTCCAATGATGTCGCAAGCGAATTGA TGGAAGCATTCCTTGAATTTAGAGAGAAGACAGGTGTCCATTTGGCGTTTCAAGGGTGTGAGCATATCAATCGTGCCCTC ACCGTTGAGCGCCGGACACTCAAACAGTTCGGCCTCACTGAAGTGACGGTCGTCCCGGTCCGTTCCGCGGGCGGGGCGAT GTCGGAGAAGGCGTATGCGAACTTCGAGGAGCCATGTGTCGTCGAATCGATTCAAGCAGATGCCGGGATTGATATCGGCT CGACATTAATTGGGATGCATTTGAAGCCGGTCGCCATTCCGGTCCGGTTGTCATCGAAGCATCTCGGCGAGGCGTACGTC ACGTTTGCGGTCACGAGACCGAAACTGATTGGTGGGCCAAGGGCTCAGTATTCGGCAAATTAA
Upstream 100 bases:
>100_bases CTGGTCTTGCACTCGACTTGGTGACGACGTGGCTCGATACGGACTTTGAAGGCGGTCGCCATTCAAACCGTGTCGACAAG ATGAGTGCTTACGAATCGAA
Downstream 100 bases:
>100_bases AAGAACTCCTACCGATTTTCATCGGTAGGAGTTCTTTTAATTTTGTGCATGAGGCTTTAAGTGTCTAACCCAATAATACA TTCCTTGCAATAGGACGATG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 180; Mature: 179
Protein sequence:
>180_residues MSQMKTELLGFLTELHERFPLNDERILVIGCSTSEVLGKTIGKAGSNDVASELMEAFLEFREKTGVHLAFQGCEHINRAL TVERRTLKQFGLTEVTVVPVRSAGGAMSEKAYANFEEPCVVESIQADAGIDIGSTLIGMHLKPVAIPVRLSSKHLGEAYV TFAVTRPKLIGGPRAQYSAN
Sequences:
>Translated_180_residues MSQMKTELLGFLTELHERFPLNDERILVIGCSTSEVLGKTIGKAGSNDVASELMEAFLEFREKTGVHLAFQGCEHINRAL TVERRTLKQFGLTEVTVVPVRSAGGAMSEKAYANFEEPCVVESIQADAGIDIGSTLIGMHLKPVAIPVRLSSKHLGEAYV TFAVTRPKLIGGPRAQYSAN >Mature_179_residues SQMKTELLGFLTELHERFPLNDERILVIGCSTSEVLGKTIGKAGSNDVASELMEAFLEFREKTGVHLAFQGCEHINRALT VERRTLKQFGLTEVTVVPVRSAGGAMSEKAYANFEEPCVVESIQADAGIDIGSTLIGMHLKPVAIPVRLSSKHLGEAYVT FAVTRPKLIGGPRAQYSAN
Specific function: Unknown
COG id: COG4475
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the UPF0340 family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR006340 - ProDom: PD102102 [H]
Pfam domain/function: PF04260 DUF436 [H]
EC number: NA
Molecular weight: Translated: 19562; Mature: 19431
Theoretical pI: Translated: 6.67; Mature: 6.67
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.7 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 4.4 %Cys+Met (Translated Protein) 1.7 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 3.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSQMKTELLGFLTELHERFPLNDERILVIGCSTSEVLGKTIGKAGSNDVASELMEAFLEF CCHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHCCCCCHHHHHHHHHHHHHH REKTGVHLAFQGCEHINRALTVERRTLKQFGLTEVTVVPVRSAGGAMSEKAYANFEEPCV HHHCCCEEEEHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCHHHHCCCCCCHH VESIQADAGIDIGSTLIGMHLKPVAIPVRLSSKHLGEAYVTFAVTRPKLIGGPRAQYSAN HHHHCCCCCCCCCHHHHCCCCCCEEEEEEECCCCCCCEEEEEEEECCHHCCCCCCCCCCC >Mature Secondary Structure SQMKTELLGFLTELHERFPLNDERILVIGCSTSEVLGKTIGKAGSNDVASELMEAFLEF CHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHCCCCCHHHHHHHHHHHHHH REKTGVHLAFQGCEHINRALTVERRTLKQFGLTEVTVVPVRSAGGAMSEKAYANFEEPCV HHHCCCEEEEHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCHHHHCCCCCCHH VESIQADAGIDIGSTLIGMHLKPVAIPVRLSSKHLGEAYVTFAVTRPKLIGGPRAQYSAN HHHHCCCCCCCCCHHHHCCCCCCEEEEEEECCCCCCCEEEEEEEECCHHCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA