| Definition | Exiguobacterium sp. AT1b, complete genome. |
|---|---|
| Accession | NC_012673 |
| Length | 2,999,895 |
Click here to switch to the map view.
The map label for this gene is yjlB [H]
Identifier: 229916690
GI number: 229916690
Start: 909884
End: 910387
Strand: Reverse
Name: yjlB [H]
Synonym: EAT1b_0963
Alternate gene names: 229916690
Gene position: 910387-909884 (Counterclockwise)
Preceding gene: 229916691
Following gene: 229916689
Centisome position: 30.35
GC content: 53.17
Gene sequence:
>504_bases ATGGATGTGAAAACTTTTTTGTTTACAGATGACGGCTCCATTCCCAACCATCCGGATTATCCGGCGCTCCTCTATCGTGG CGTCTTTGATGACCCGAGCGGGATGCGAGAGACGTTCGCCCATAATGAATGGACGAACAGTTGGGTGAACGGGGTGTTCG ATTATCATCACTATCACAGCAACACGCATGAAGTATTAGGCGTATTACAAGGTGAGGCGACTCTTCAACTCGGAGGGACG AACGGTGACCTCGTCCGCGTCCGCCTAGGTGATGTCCTCGTCTTGCCGGCGGGAACGGGACATCGGCGGATTGAAATGAG CGAAGATTTTCAAGTCGTCGGGGCATACCCGGACGGTCGTGACTATGATACGTTGACCGGGAAGACGGAAGAACGACCGG ACAATGTGAAGCGAATCGAACAAGTCGACAAGCCGAAGTTTGACCCCGTCTTCGGGACGACGGGCCCACTACATGAGGAA TGGACAAAGGAGGAAACGTTATGA
Upstream 100 bases:
>100_bases TGAAGAGGTCATTTCATAACCATCACGGTCGTCCAATACGGACGACCGTTTTTCGTTGTGACAAGTCGGGTACAGGGACA GAGACAAGGAGGGAATTAGG
Downstream 100 bases:
>100_bases ATCAACGACTACCACATTCTTTATTACTCGCAGCTTTGAAACAAAACGTCGTCGAATTGAAAGATGGCCGCGAGATGCGC GCACTCGGGCAAGGGACGTG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 167; Mature: 167
Protein sequence:
>167_residues MDVKTFLFTDDGSIPNHPDYPALLYRGVFDDPSGMRETFAHNEWTNSWVNGVFDYHHYHSNTHEVLGVLQGEATLQLGGT NGDLVRVRLGDVLVLPAGTGHRRIEMSEDFQVVGAYPDGRDYDTLTGKTEERPDNVKRIEQVDKPKFDPVFGTTGPLHEE WTKEETL
Sequences:
>Translated_167_residues MDVKTFLFTDDGSIPNHPDYPALLYRGVFDDPSGMRETFAHNEWTNSWVNGVFDYHHYHSNTHEVLGVLQGEATLQLGGT NGDLVRVRLGDVLVLPAGTGHRRIEMSEDFQVVGAYPDGRDYDTLTGKTEERPDNVKRIEQVDKPKFDPVFGTTGPLHEE WTKEETL >Mature_167_residues MDVKTFLFTDDGSIPNHPDYPALLYRGVFDDPSGMRETFAHNEWTNSWVNGVFDYHHYHSNTHEVLGVLQGEATLQLGGT NGDLVRVRLGDVLVLPAGTGHRRIEMSEDFQVVGAYPDGRDYDTLTGKTEERPDNVKRIEQVDKPKFDPVFGTTGPLHEE WTKEETL
Specific function: Unknown
COG id: COG4297
COG function: function code S; Uncharacterized protein containing double-stranded beta helix domain
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR013096 - InterPro: IPR011051 - InterPro: IPR014710 - InterPro: IPR014500 [H]
Pfam domain/function: PF07883 Cupin_2 [H]
EC number: NA
Molecular weight: Translated: 18889; Mature: 18889
Theoretical pI: Translated: 4.58; Mature: 4.58
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 1.8 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 1.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDVKTFLFTDDGSIPNHPDYPALLYRGVFDDPSGMRETFAHNEWTNSWVNGVFDYHHYHS CCCEEEEEECCCCCCCCCCCHHHEEECCCCCCCCHHHHHCCCCHHHHHHHHHHHHHHHCC NTHEVLGVLQGEATLQLGGTNGDLVRVRLGDVLVLPAGTGHRRIEMSEDFQVVGAYPDGR CHHHHHEEECCCEEEEECCCCCCEEEEEECCEEEEECCCCCEEEEECCCEEEEEECCCCC DYDTLTGKTEERPDNVKRIEQVDKPKFDPVFGTTGPLHEEWTKEETL CCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHCCCC >Mature Secondary Structure MDVKTFLFTDDGSIPNHPDYPALLYRGVFDDPSGMRETFAHNEWTNSWVNGVFDYHHYHS CCCEEEEEECCCCCCCCCCCHHHEEECCCCCCCCHHHHHCCCCHHHHHHHHHHHHHHHCC NTHEVLGVLQGEATLQLGGTNGDLVRVRLGDVLVLPAGTGHRRIEMSEDFQVVGAYPDGR CHHHHHEEECCCEEEEECCCCCCEEEEEECCEEEEECCCCCEEEEECCCEEEEEECCCCC DYDTLTGKTEERPDNVKRIEQVDKPKFDPVFGTTGPLHEEWTKEETL CCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9579062; 9384377 [H]