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The map label for this gene is ytcD [H]

Identifier: 229916691

GI number: 229916691

Start: 910469

End: 910795

Strand: Reverse

Name: ytcD [H]

Synonym: EAT1b_0964

Alternate gene names: 229916691

Gene position: 910795-910469 (Counterclockwise)

Preceding gene: 229916694

Following gene: 229916690

Centisome position: 30.36

GC content: 52.29

Gene sequence:

>327_bases
ATGCCATATAATATTCCGGTCGAAGCGACACTTGACGTCATCGGCGGTAAATGGAAAGTCGTCATCATGTGTCACTTGAT
CAAAGGTGAGCGTCGGACGAGTGAATTGCGTAAGCTCATGCCGAACATCACCCAAAAGATGCTCACCCAGCAACTGCGTG
AGCTCGAAGCGGATGGAGTCGTCGTGCGTACGGTGTACGAGCAAGTCCCACCGAAAGTCATCTACTCGCTCTCGGAGTAC
GGATGGTCACTCAAGCCAATCTTGGACGCCATGTGCGCCTGGGGCGAATGCCATATCGATCAGTCCGGTGAAGAGGTCAT
TTCATAA

Upstream 100 bases:

>100_bases
ACAGTTGCTATCATAAGGGCATGAAAACAGTTTGAGAAGTACGTACTTTTTAGTGCGGTAGGCACCAAAAAGTGCCTATG
GGAGAAACGGAGGAAATGAT

Downstream 100 bases:

>100_bases
CCATCACGGTCGTCCAATACGGACGACCGTTTTTCGTTGTGACAAGTCGGGTACAGGGACAGAGACAAGGAGGGAATTAG
GATGGATGTGAAAACTTTTT

Product: HxlR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 108; Mature: 107

Protein sequence:

>108_residues
MPYNIPVEATLDVIGGKWKVVIMCHLIKGERRTSELRKLMPNITQKMLTQQLRELEADGVVVRTVYEQVPPKVIYSLSEY
GWSLKPILDAMCAWGECHIDQSGEEVIS

Sequences:

>Translated_108_residues
MPYNIPVEATLDVIGGKWKVVIMCHLIKGERRTSELRKLMPNITQKMLTQQLRELEADGVVVRTVYEQVPPKVIYSLSEY
GWSLKPILDAMCAWGECHIDQSGEEVIS
>Mature_107_residues
PYNIPVEATLDVIGGKWKVVIMCHLIKGERRTSELRKLMPNITQKMLTQQLRELEADGVVVRTVYEQVPPKVIYSLSEYG
WSLKPILDAMCAWGECHIDQSGEEVIS

Specific function: Unknown

COG id: COG1733

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH hxlR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87082391, Length=94, Percent_Identity=35.1063829787234, Blast_Score=65, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002577
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01638 DUF24 [H]

EC number: NA

Molecular weight: Translated: 12303; Mature: 12171

Theoretical pI: Translated: 5.73; Mature: 5.73

Prosite motif: PS51118 HTH_HXLR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.8 %Cys     (Translated Protein)
4.6 %Met     (Translated Protein)
7.4 %Cys+Met (Translated Protein)
2.8 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
6.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPYNIPVEATLDVIGGKWKVVIMCHLIKGERRTSELRKLMPNITQKMLTQQLRELEADGV
CCCCCCHHHHHHHCCCCEEEEEEEEHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
VVRTVYEQVPPKVIYSLSEYGWSLKPILDAMCAWGECHIDQSGEEVIS
HHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCCCHHHCC
>Mature Secondary Structure 
PYNIPVEATLDVIGGKWKVVIMCHLIKGERRTSELRKLMPNITQKMLTQQLRELEADGV
CCCCCHHHHHHHCCCCEEEEEEEEHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
VVRTVYEQVPPKVIYSLSEYGWSLKPILDAMCAWGECHIDQSGEEVIS
HHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCCCHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9387221; 9384377 [H]