Click here to switch to the map view.

The map label for this gene is scoB [H]

Identifier: 229586935

GI number: 229586935

Start: 859858

End: 860493

Strand: Direct

Name: scoB [H]

Synonym: RAF_ORF0821

Alternate gene names: 229586935

Gene position: 859858-860493 (Clockwise)

Preceding gene: 229586934

Following gene: 229586942

Centisome position: 67.25

GC content: 35.85

Gene sequence:

>636_bases
ATGCCTTGGAGCAAAGAAGAAATTTATCAAATAACCGCAGAGGAACTTAAAGACGGATTATATGTCAATCTTGGTATAGG
TATGCCTACGCATGTAGCAAATTATATACCTCAAGGAGTGAATGCAATATTTCAAAGTAAGAACGGTATGCTTGGTATGG
GACCATTTCCTTACGCAGGAGAGGAAGATCCTGATTTAATTAACGCCGGTAAGCAAACTATTACTGCTATTCCTGAAAGC
AGCTATTTCGACAGTAGCTTTTCATTTGGGATGATTAGAGGTTCGCATGTCGATTTAACTATTTTATGTGCTATGCAAGT
CTCACAAACAGGCGATCTTGCCAACTGGACTATTCCGGGTAAAATGGTTAAAGGTATGGGAGGAGCTATGGATTTGGTCG
CTAACACCAAAAGAGTAGTTATTATAATGAAACATAACGCAAAAGATGGCGGTGCTAAATTATTAAAAGAATGCAACTTT
CCGTTAACAGGTAAAAAAGTAGTTAACAGAGTAATTACCGATCTTGGAATTTTTGATATTGATAAAGATGAAATGATATT
AGTTAGACAAGCTGACGATGTTACTATTGAAGAAATAAAGTCTAAAACTGAAGCCGAGTTTATAGTTAATTTATAA

Upstream 100 bases:

>100_bases
TAACAATATTCACACACCTAATATTTTCATACAGCGATTAATAGTAGGTGAAAAATATGAGAAACGTATTGAGCAATTAA
CTGTCAGGGAAAAATAAGAT

Downstream 100 bases:

>100_bases
TATGGAGAATAACATGGTTAAAGTAGCTATCGTAATATTATAGTAGATACGGTCATACTGCAAAGTAGCTGAAACACTAA
ATAAGAGCATAAAGGCAGCA

Product: Succinyl-CoA:3-ketoacid-coenzyme A transferase subunit B

Products: NA

Alternate protein names: OXCT B; Succinyl CoA:3-oxoacid CoA-transferase [H]

Number of amino acids: Translated: 211; Mature: 210

Protein sequence:

>211_residues
MPWSKEEIYQITAEELKDGLYVNLGIGMPTHVANYIPQGVNAIFQSKNGMLGMGPFPYAGEEDPDLINAGKQTITAIPES
SYFDSSFSFGMIRGSHVDLTILCAMQVSQTGDLANWTIPGKMVKGMGGAMDLVANTKRVVIIMKHNAKDGGAKLLKECNF
PLTGKKVVNRVITDLGIFDIDKDEMILVRQADDVTIEEIKSKTEAEFIVNL

Sequences:

>Translated_211_residues
MPWSKEEIYQITAEELKDGLYVNLGIGMPTHVANYIPQGVNAIFQSKNGMLGMGPFPYAGEEDPDLINAGKQTITAIPES
SYFDSSFSFGMIRGSHVDLTILCAMQVSQTGDLANWTIPGKMVKGMGGAMDLVANTKRVVIIMKHNAKDGGAKLLKECNF
PLTGKKVVNRVITDLGIFDIDKDEMILVRQADDVTIEEIKSKTEAEFIVNL
>Mature_210_residues
PWSKEEIYQITAEELKDGLYVNLGIGMPTHVANYIPQGVNAIFQSKNGMLGMGPFPYAGEEDPDLINAGKQTITAIPESS
YFDSSFSFGMIRGSHVDLTILCAMQVSQTGDLANWTIPGKMVKGMGGAMDLVANTKRVVIIMKHNAKDGGAKLLKECNFP
LTGKKVVNRVITDLGIFDIDKDEMILVRQADDVTIEEIKSKTEAEFIVNL

Specific function: SHORT-CHAIN FATTY ACIDS METABOLISM. [C]

COG id: COG2057

COG function: function code I; Acyl CoA:acetate/3-ketoacid CoA transferase, beta subunit

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 3-oxoacid CoA-transferase subunit B family [H]

Homologues:

Organism=Homo sapiens, GI4557817, Length=208, Percent_Identity=50.9615384615385, Blast_Score=225, Evalue=2e-59,
Organism=Homo sapiens, GI11545841, Length=209, Percent_Identity=48.8038277511962, Blast_Score=213, Evalue=1e-55,
Organism=Escherichia coli, GI1788552, Length=206, Percent_Identity=47.5728155339806, Blast_Score=213, Evalue=1e-56,
Organism=Caenorhabditis elegans, GI17531517, Length=206, Percent_Identity=52.9126213592233, Blast_Score=223, Evalue=5e-59,
Organism=Drosophila melanogaster, GI21358325, Length=208, Percent_Identity=53.3653846153846, Blast_Score=233, Evalue=1e-61,
Organism=Drosophila melanogaster, GI24655794, Length=208, Percent_Identity=53.3653846153846, Blast_Score=232, Evalue=1e-61,

Paralogues:

None

Copy number: 369 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012791
- InterPro:   IPR004165
- InterPro:   IPR004164 [H]

Pfam domain/function: PF01144 CoA_trans [H]

EC number: =2.8.3.5 [H]

Molecular weight: Translated: 23104; Mature: 22973

Theoretical pI: Translated: 4.77; Mature: 4.77

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
5.2 %Met     (Translated Protein)
6.2 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
4.8 %Met     (Mature Protein)
5.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPWSKEEIYQITAEELKDGLYVNLGIGMPTHVANYIPQGVNAIFQSKNGMLGMGPFPYAG
CCCCHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHCCHHHHHHHHCCCCCEECCCCCCCC
EEDPDLINAGKQTITAIPESSYFDSSFSFGMIRGSHVDLTILCAMQVSQTGDLANWTIPG
CCCCHHHHCCCCEEEECCCCCCCCCCCCEEEEECCCCCEEEEEEEECCCCCCCCEEECCH
KMVKGMGGAMDLVANTKRVVIIMKHNAKDGGAKLLKECNFPLTGKKVVNRVITDLGIFDI
HHHHCCCCHHHHHCCCCEEEEEEECCCCCHHHHHHHHCCCCCCHHHHHHHHHHHCCCEEC
DKDEMILVRQADDVTIEEIKSKTEAEFIVNL
CCCCEEEEECCCCCHHHHHHCCCCCEEEEEC
>Mature Secondary Structure 
PWSKEEIYQITAEELKDGLYVNLGIGMPTHVANYIPQGVNAIFQSKNGMLGMGPFPYAG
CCCHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHCCHHHHHHHHCCCCCEECCCCCCCC
EEDPDLINAGKQTITAIPESSYFDSSFSFGMIRGSHVDLTILCAMQVSQTGDLANWTIPG
CCCCHHHHCCCCEEEECCCCCCCCCCCCEEEEECCCCCEEEEEEEECCCCCCCCEEECCH
KMVKGMGGAMDLVANTKRVVIIMKHNAKDGGAKLLKECNFPLTGKKVVNRVITDLGIFDI
HHHHCCCCHHHHHCCCCEEEEEEECCCCCHHHHHHHHCCCCCCHHHHHHHHHHHCCCEEC
DKDEMILVRQADDVTIEEIKSKTEAEFIVNL
CCCCEEEEECCCCCHHHHHHCCCCCEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9385134 [H]