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The map label for this gene is virB6-3

Identifier: 229586346

GI number: 229586346

Start: 140419

End: 143319

Strand: Direct

Name: virB6-3

Synonym: RAF_ORF0133

Alternate gene names: NA

Gene position: 140419-143319 (Clockwise)

Preceding gene: 229586345

Following gene: 229586347

Centisome position: 10.98

GC content: 35.78

Gene sequence:

>2901_bases
ATGCAGGGTAACTTATTAAAAGTTTTAGGAGTACTTGCTATAGTAGCAACGTTAGTTTGCTTTATTTTTGCAGCACTTGG
TATGATAGGAGCAGTAAAAGTCGGTGACAGCTGCTACATGAGATATGCATCGGACGGTCAAGGAGGAGCGGATTCAATAA
CCGGTACTATAACCCTTAATGCTAATGCTAATTATGTAAACACTACTAAGATGTTGTCCGACGGCACGACTCTGCTTGTT
CCTGATCCTACTCGTTACGGTGAATGGCTAAATACTCAGGTGCTAGTAGAAAACAGCCAACCGGTGAATTTACAAGTGGT
CGGTCAGGTTAGTTTGTGTTTAGCTTATATACCGAAAGATAATTTACAACGTACAGGGGCTGGATCTAATTTAGACGATA
ACGGTCAAATGATCCCGATTCCTCGTATTAACGATACAAATAATCCACCTGTCTCTCTAATAATGGATGCAAAAAATAAT
GAATGGCGTAATATTGCCGAATTATACGCCAATGATAGAGTTTTAGTTTCCGTATCTCCTAATTTTGCCAATACGGATGC
GACAGTTAAAGATGCTTTTAAAGGTGCTGAAGTTACGCAAGATTGTTCAGAGAATAAAACTACTTATAATCCAATTTGTG
GAAAATATTCTGTTTATTCAGGTAAGTATGTCAATGCTTGCGAGTTAAAAGAGAAATATTGGAATTGTCAAGTCACATGG
AGGTGCCCTAACTGGTATGAGCAAGCAGGTTGCGACTGGGGAGCATTGGGCTGTATTGCGTCTTGTCAAAAGATACCAGA
ATGTACAACGAAATGTATGGCTTGGGTTAATATAATGAGACCAGCACCAGAAAACTACCTAGATGATGAGAGTTTTACAT
TTTCGTGGTCTGACAACACAGGTAAATTATTTATCGACTATTCAGCCCTTCAATGTTCTTATAATGCTAATATTCCTCCA
GCTGATCAATGTCCTGATCGTGTTCACGATCGTCGTACAAAAGATAAAGATTATATTGGAGGTGTACATTGTACTTCGGG
CATATGTAGCGATGGAGATTTTCAAAAGAATCGGAGATTTTGGTATACGGCGGACGGTAAAGGAGGCAAAGGACCAACTG
GATTAATATATCAAATGAATGATGCGGGTTCTGTAAGTCAAGCTCTGCCTTCTAAGCTAGAATTTGCTAAATTTGTTGCA
GATACAGATCAACCGCCTGACTATAAAGATAAAGACGGTAAATATTTATATAAAGTTATATATAATATACCTTTTAACAG
TGATATTGCAAAAAGTTATTTACAATATAGGCTGTGGTCGCCTACCTCACAAGATAGTAGTAAGAATACGGGAGGATACG
TTTTAAATATTAAACAGACTAAATGCTATAGAGAAAACGGTAATAGTTTTAACGATACTTTTGATGATCGAGGACGAGTG
CAATACATCATAGTAAAGCCTTCGGAAAACCCGAATACTAGCGGTAAAACCTATTCACCTCAAGGAATTAGCGTTGATAG
TGAAGGTAAATATAGCTTTAACGCAAATGAGGCGGGTTATATATGGATGAAAATTCTAAATGATCCTGGTAATAATTTAA
GGGACTATAAAGATAGTGAAGGTAGCTATAAAGTACATTTCTCAACATCCTTAAAAGTAGGAAGTTTTTCTATTAAAGTA
ATGAATCCGTTACTTCAGTTATTTAAAACTAAAGTGCAAGGGGCTGCTACTTCTATTTTTAAAAATATGGTATGTTATAA
AGCTAATGATAGTTCGTCCTGTACTAACTTTTTTACCTATATTAAAGCAATTTTAATTCTGTATGTGATGACTTACGGAG
CAATGTTTTTACTTGGTTTTGCTAAGATAAACCAAAAAGAGCTAGTAATTAGAATAGCAAAAATCGGGGTAGTTAGCGGA
CTGATGAACGGTAATACCTTTGAATTTTTCAATAACTATCTTTTTGATGCAATTACCAATTTTTCAGACTCAATTATTGC
TAATATGAGTGGATATAGTTTGTTTACTTCTACTAATACTATTTCTAATCCTTTCATGTTTTTAGATGCAGTAATGAGTA
AAATATTTTTTAGTCAAACCTTTATCGCTCAATTACTTGCACTTCTTTCTCTTGGGCTTAGCGGTATTATATATTTTATA
ATTACTTTTATTGCGGTTTGTATAGTAATTATTACGGCGCTTAGAGCTGTTGCCGTTTATATTATGGCATTTATGGCAAC
TTGTATATTAATCGGTATAGCCCCTTTATTTATTAGTTTCTTATTATTTGATTTTACTAGGTATTTATTTGATAATTGGG
TGAGGTTTACGATCCGCTATATGCTGGAACCGGTAGTTATGATGGCAGGTATTATAGTGCTAACACAACTATTTACCATT
TATCTAGATTTTGTTTTAGGTTATAGCGTGTGTTGGAAATGTGCTTTACCGATAAAAATTCCGTTTATCGGTACTATTTT
ACCTATTGCCTTGCTGAATGTACCTATCTTCTGTATTAATTGGTTTGCCCCTTGGGGAATGGATTATATGTCGGGTATGA
TGGGAGTAAATATGCAAAATATCGTAGCTCTAGTTATTATTGCTTACGGTATGTACGGTTATGTCGAATTTTCAGGACGT
ATGGTAGTAAAATTAACTAGTGCTGTTGGGCCTTCGGCTACTGAAATTGGTGGTAAAATGTCTCATGATGCAGGACAAAA
AGCATTAAGTTCAATAGGAATGGATGATAAAACAAGACAAGGTATTACCGGCAGAGCGGAAGCACGATTAAAACAACGCA
ATAAGACATTAGATCAGGCTGAGAAAAATAGGAAAAATACGCCAAAAGAAGGGGGCGAGAAGACAAATGAAGAACCACCT
AAACCTGAAACACCGAAATAG

Upstream 100 bases:

>100_bases
GTTGGTAGGAGATAAGCCGGGTGTTGGAGGTAAGCGTAAAGAGGGAGAGCAGCAAGGCAGGGATTTAGCAAGCGGTTCGG
GTGGAGGTAAATGATAGAAT

Downstream 100 bases:

>100_bases
AGGGTGAATCGAAAATCGTCATTGCGAGGAAATTATGAAATAATTGACAAAGCAATCTCAGGAGTTATTTCATGAGATTG
CCGCGCAGCCATACAGCTGC

Product: VirB6

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 966; Mature: 966

Protein sequence:

>966_residues
MQGNLLKVLGVLAIVATLVCFIFAALGMIGAVKVGDSCYMRYASDGQGGADSITGTITLNANANYVNTTKMLSDGTTLLV
PDPTRYGEWLNTQVLVENSQPVNLQVVGQVSLCLAYIPKDNLQRTGAGSNLDDNGQMIPIPRINDTNNPPVSLIMDAKNN
EWRNIAELYANDRVLVSVSPNFANTDATVKDAFKGAEVTQDCSENKTTYNPICGKYSVYSGKYVNACELKEKYWNCQVTW
RCPNWYEQAGCDWGALGCIASCQKIPECTTKCMAWVNIMRPAPENYLDDESFTFSWSDNTGKLFIDYSALQCSYNANIPP
ADQCPDRVHDRRTKDKDYIGGVHCTSGICSDGDFQKNRRFWYTADGKGGKGPTGLIYQMNDAGSVSQALPSKLEFAKFVA
DTDQPPDYKDKDGKYLYKVIYNIPFNSDIAKSYLQYRLWSPTSQDSSKNTGGYVLNIKQTKCYRENGNSFNDTFDDRGRV
QYIIVKPSENPNTSGKTYSPQGISVDSEGKYSFNANEAGYIWMKILNDPGNNLRDYKDSEGSYKVHFSTSLKVGSFSIKV
MNPLLQLFKTKVQGAATSIFKNMVCYKANDSSSCTNFFTYIKAILILYVMTYGAMFLLGFAKINQKELVIRIAKIGVVSG
LMNGNTFEFFNNYLFDAITNFSDSIIANMSGYSLFTSTNTISNPFMFLDAVMSKIFFSQTFIAQLLALLSLGLSGIIYFI
ITFIAVCIVIITALRAVAVYIMAFMATCILIGIAPLFISFLLFDFTRYLFDNWVRFTIRYMLEPVVMMAGIIVLTQLFTI
YLDFVLGYSVCWKCALPIKIPFIGTILPIALLNVPIFCINWFAPWGMDYMSGMMGVNMQNIVALVIIAYGMYGYVEFSGR
MVVKLTSAVGPSATEIGGKMSHDAGQKALSSIGMDDKTRQGITGRAEARLKQRNKTLDQAEKNRKNTPKEGGEKTNEEPP
KPETPK

Sequences:

>Translated_966_residues
MQGNLLKVLGVLAIVATLVCFIFAALGMIGAVKVGDSCYMRYASDGQGGADSITGTITLNANANYVNTTKMLSDGTTLLV
PDPTRYGEWLNTQVLVENSQPVNLQVVGQVSLCLAYIPKDNLQRTGAGSNLDDNGQMIPIPRINDTNNPPVSLIMDAKNN
EWRNIAELYANDRVLVSVSPNFANTDATVKDAFKGAEVTQDCSENKTTYNPICGKYSVYSGKYVNACELKEKYWNCQVTW
RCPNWYEQAGCDWGALGCIASCQKIPECTTKCMAWVNIMRPAPENYLDDESFTFSWSDNTGKLFIDYSALQCSYNANIPP
ADQCPDRVHDRRTKDKDYIGGVHCTSGICSDGDFQKNRRFWYTADGKGGKGPTGLIYQMNDAGSVSQALPSKLEFAKFVA
DTDQPPDYKDKDGKYLYKVIYNIPFNSDIAKSYLQYRLWSPTSQDSSKNTGGYVLNIKQTKCYRENGNSFNDTFDDRGRV
QYIIVKPSENPNTSGKTYSPQGISVDSEGKYSFNANEAGYIWMKILNDPGNNLRDYKDSEGSYKVHFSTSLKVGSFSIKV
MNPLLQLFKTKVQGAATSIFKNMVCYKANDSSSCTNFFTYIKAILILYVMTYGAMFLLGFAKINQKELVIRIAKIGVVSG
LMNGNTFEFFNNYLFDAITNFSDSIIANMSGYSLFTSTNTISNPFMFLDAVMSKIFFSQTFIAQLLALLSLGLSGIIYFI
ITFIAVCIVIITALRAVAVYIMAFMATCILIGIAPLFISFLLFDFTRYLFDNWVRFTIRYMLEPVVMMAGIIVLTQLFTI
YLDFVLGYSVCWKCALPIKIPFIGTILPIALLNVPIFCINWFAPWGMDYMSGMMGVNMQNIVALVIIAYGMYGYVEFSGR
MVVKLTSAVGPSATEIGGKMSHDAGQKALSSIGMDDKTRQGITGRAEARLKQRNKTLDQAEKNRKNTPKEGGEKTNEEPP
KPETPK
>Mature_966_residues
MQGNLLKVLGVLAIVATLVCFIFAALGMIGAVKVGDSCYMRYASDGQGGADSITGTITLNANANYVNTTKMLSDGTTLLV
PDPTRYGEWLNTQVLVENSQPVNLQVVGQVSLCLAYIPKDNLQRTGAGSNLDDNGQMIPIPRINDTNNPPVSLIMDAKNN
EWRNIAELYANDRVLVSVSPNFANTDATVKDAFKGAEVTQDCSENKTTYNPICGKYSVYSGKYVNACELKEKYWNCQVTW
RCPNWYEQAGCDWGALGCIASCQKIPECTTKCMAWVNIMRPAPENYLDDESFTFSWSDNTGKLFIDYSALQCSYNANIPP
ADQCPDRVHDRRTKDKDYIGGVHCTSGICSDGDFQKNRRFWYTADGKGGKGPTGLIYQMNDAGSVSQALPSKLEFAKFVA
DTDQPPDYKDKDGKYLYKVIYNIPFNSDIAKSYLQYRLWSPTSQDSSKNTGGYVLNIKQTKCYRENGNSFNDTFDDRGRV
QYIIVKPSENPNTSGKTYSPQGISVDSEGKYSFNANEAGYIWMKILNDPGNNLRDYKDSEGSYKVHFSTSLKVGSFSIKV
MNPLLQLFKTKVQGAATSIFKNMVCYKANDSSSCTNFFTYIKAILILYVMTYGAMFLLGFAKINQKELVIRIAKIGVVSG
LMNGNTFEFFNNYLFDAITNFSDSIIANMSGYSLFTSTNTISNPFMFLDAVMSKIFFSQTFIAQLLALLSLGLSGIIYFI
ITFIAVCIVIITALRAVAVYIMAFMATCILIGIAPLFISFLLFDFTRYLFDNWVRFTIRYMLEPVVMMAGIIVLTQLFTI
YLDFVLGYSVCWKCALPIKIPFIGTILPIALLNVPIFCINWFAPWGMDYMSGMMGVNMQNIVALVIIAYGMYGYVEFSGR
MVVKLTSAVGPSATEIGGKMSHDAGQKALSSIGMDDKTRQGITGRAEARLKQRNKTLDQAEKNRKNTPKEGGEKTNEEPP
KPETPK

Specific function: Unknown

COG id: COG3704

COG function: function code U; Type IV secretory pathway, VirB6 components

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the trbL/virB6 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007688 [H]

Pfam domain/function: PF04610 TrbL [H]

EC number: NA

Molecular weight: Translated: 107365; Mature: 107365

Theoretical pI: Translated: 7.95; Mature: 7.95

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.6 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
5.9 %Cys+Met (Translated Protein)
2.6 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
5.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQGNLLKVLGVLAIVATLVCFIFAALGMIGAVKVGDSCYMRYASDGQGGADSITGTITLN
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCHHEEEECCCCCCCCCCEEEEEEEC
ANANYVNTTKMLSDGTTLLVPDPTRYGEWLNTQVLVENSQPVNLQVVGQVSLCLAYIPKD
CCCCEEEHHHEECCCCEEEECCCHHHCCCCCCEEEEECCCCCEEEEECHHEEHHEECCCC
NLQRTGAGSNLDDNGQMIPIPRINDTNNPPVSLIMDAKNNEWRNIAELYANDRVLVSVSP
CCCCCCCCCCCCCCCCEEECCCCCCCCCCCEEEEEECCCCCHHHHHHHHCCCEEEEEECC
NFANTDATVKDAFKGAEVTQDCSENKTTYNPICGKYSVYSGKYVNACELKEKYWNCQVTW
CCCCCCCHHHHHHCCCHHHHHHHCCCCCCCCCCCCEEECCCCCCCHHHHHHHHCCCEEEE
RCPNWYEQAGCDWGALGCIASCQKIPECTTKCMAWVNIMRPAPENYLDDESFTFSWSDNT
ECCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCC
GKLFIDYSALQCSYNANIPPADQCPDRVHDRRTKDKDYIGGVHCTSGICSDGDFQKNRRF
CEEEEEEEEEEEECCCCCCCCCCCCHHHHHCCCCCCHHCCCEEECCCCCCCCCCCCCCEE
WYTADGKGGKGPTGLIYQMNDAGSVSQALPSKLEFAKFVADTDQPPDYKDKDGKYLYKVI
EEEECCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEE
YNIPFNSDIAKSYLQYRLWSPTSQDSSKNTGGYVLNIKQTKCYRENGNSFNDTFDDRGRV
EECCCCHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEEHHHHHHHCCCCCCCCCCCCCCE
QYIIVKPSENPNTSGKTYSPQGISVDSEGKYSFNANEAGYIWMKILNDPGNNLRDYKDSE
EEEEECCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCEEEEEEECCCCCCCCCCCCCC
GSYKVHFSTSLKVGSFSIKVMNPLLQLFKTKVQGAATSIFKNMVCYKANDSSSCTNFFTY
CCEEEEEEEEEEECCEEHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCHHHHHHHH
IKAILILYVMTYGAMFLLGFAKINQKELVIRIAKIGVVSGLMNGNTFEFFNNYLFDAITN
HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHC
FSDSIIANMSGYSLFTSTNTISNPFMFLDAVMSKIFFSQTFIAQLLALLSLGLSGIIYFI
CCHHHHCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ITFIAVCIVIITALRAVAVYIMAFMATCILIGIAPLFISFLLFDFTRYLFDNWVRFTIRY
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
MLEPVVMMAGIIVLTQLFTIYLDFVLGYSVCWKCALPIKIPFIGTILPIALLNVPIFCIN
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEECCHHHHHHHHHHHCCCCEEEE
WFAPWGMDYMSGMMGVNMQNIVALVIIAYGMYGYVEFSGRMVVKLTSAVGPSATEIGGKM
CCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHEEEEECCEEEEEEECCCCCCHHHHCCCC
SHDAGQKALSSIGMDDKTRQGITGRAEARLKQRNKTLDQAEKNRKNTPKEGGEKTNEEPP
CHHHHHHHHHHCCCCCHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
KPETPK
CCCCCC
>Mature Secondary Structure
MQGNLLKVLGVLAIVATLVCFIFAALGMIGAVKVGDSCYMRYASDGQGGADSITGTITLN
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCHHEEEECCCCCCCCCCEEEEEEEC
ANANYVNTTKMLSDGTTLLVPDPTRYGEWLNTQVLVENSQPVNLQVVGQVSLCLAYIPKD
CCCCEEEHHHEECCCCEEEECCCHHHCCCCCCEEEEECCCCCEEEEECHHEEHHEECCCC
NLQRTGAGSNLDDNGQMIPIPRINDTNNPPVSLIMDAKNNEWRNIAELYANDRVLVSVSP
CCCCCCCCCCCCCCCCEEECCCCCCCCCCCEEEEEECCCCCHHHHHHHHCCCEEEEEECC
NFANTDATVKDAFKGAEVTQDCSENKTTYNPICGKYSVYSGKYVNACELKEKYWNCQVTW
CCCCCCCHHHHHHCCCHHHHHHHCCCCCCCCCCCCEEECCCCCCCHHHHHHHHCCCEEEE
RCPNWYEQAGCDWGALGCIASCQKIPECTTKCMAWVNIMRPAPENYLDDESFTFSWSDNT
ECCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCC
GKLFIDYSALQCSYNANIPPADQCPDRVHDRRTKDKDYIGGVHCTSGICSDGDFQKNRRF
CEEEEEEEEEEEECCCCCCCCCCCCHHHHHCCCCCCHHCCCEEECCCCCCCCCCCCCCEE
WYTADGKGGKGPTGLIYQMNDAGSVSQALPSKLEFAKFVADTDQPPDYKDKDGKYLYKVI
EEEECCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEE
YNIPFNSDIAKSYLQYRLWSPTSQDSSKNTGGYVLNIKQTKCYRENGNSFNDTFDDRGRV
EECCCCHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEEHHHHHHHCCCCCCCCCCCCCCE
QYIIVKPSENPNTSGKTYSPQGISVDSEGKYSFNANEAGYIWMKILNDPGNNLRDYKDSE
EEEEECCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCEEEEEEECCCCCCCCCCCCCC
GSYKVHFSTSLKVGSFSIKVMNPLLQLFKTKVQGAATSIFKNMVCYKANDSSSCTNFFTY
CCEEEEEEEEEEECCEEHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCHHHHHHHH
IKAILILYVMTYGAMFLLGFAKINQKELVIRIAKIGVVSGLMNGNTFEFFNNYLFDAITN
HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHC
FSDSIIANMSGYSLFTSTNTISNPFMFLDAVMSKIFFSQTFIAQLLALLSLGLSGIIYFI
CCHHHHCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ITFIAVCIVIITALRAVAVYIMAFMATCILIGIAPLFISFLLFDFTRYLFDNWVRFTIRY
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
MLEPVVMMAGIIVLTQLFTIYLDFVLGYSVCWKCALPIKIPFIGTILPIALLNVPIFCIN
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEECCHHHHHHHHHHHCCCCEEEE
WFAPWGMDYMSGMMGVNMQNIVALVIIAYGMYGYVEFSGRMVVKLTSAVGPSATEIGGKM
CCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHEEEEECCEEEEEEECCCCCCHHHHCCCC
SHDAGQKALSSIGMDDKTRQGITGRAEARLKQRNKTLDQAEKNRKNTPKEGGEKTNEEPP
CHHHHHHHHHHCCCCCHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
KPETPK
CCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11557893 [H]