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The map label for this gene is secB

Identifier: 229586313

GI number: 229586313

Start: 95599

End: 96057

Strand: Direct

Name: secB

Synonym: RAF_ORF0096

Alternate gene names: 229586313

Gene position: 95599-96057 (Clockwise)

Preceding gene: 229586312

Following gene: 229586314

Centisome position: 7.48

GC content: 32.46

Gene sequence:

>459_bases
ATGAGTACAATAAACACCGATACTAATGAGACAATGCCGCATGTTTCCGTTAATGCACAATATATAAAAGATTTATCTCT
TGAGAACCCTTCTGCCCCGTCTTCTCTTGCGGCTTTGGATCAACGCCCTCAAATTGATTTATCTCTAGATATAAATATTA
CTAATTTATCGGAAGAAAATTTCTATGAAGTAGAGTTAAATATCGAGGCAATTGCAAGAAATGAGAAATATAAATTATTT
CAGATAGAATTAAAATATGCTGGAGTATTTAATTTAATTAATATTGATTCTGAACAACATCCGGTTTTATTATCCGTTCA
TTGTCCGGCAATGATATTTCCATTTGCCAGAAAAATTATAGCTAGCTGTACTCAAGATGCAGGATTCCAGCCTTTAATGA
TTGATCCTATAGATTTTGGTGCCTTATATCATAAGAAAATGTCAGAGCATCAAAACTAA

Upstream 100 bases:

>100_bases
CGATCGCCAAGGAAAATATATGAAACAAGTAGGCGTAACTTTACCGCTAACATAACTTTTTTATGTAGAAAATTATATTA
AATTTTTAATAAGGATTTTT

Downstream 100 bases:

>100_bases
GAAAATCATTTAATTATTATAAATTTCATTTTAAACGCCATGGTTTTTAAACCACAGATAGAGCTTAATAGTAAAAATTT
TATCAAATTAAATATTCTTT

Product: preprotein translocase subunit SecB

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 152; Mature: 151

Protein sequence:

>152_residues
MSTINTDTNETMPHVSVNAQYIKDLSLENPSAPSSLAALDQRPQIDLSLDINITNLSEENFYEVELNIEAIARNEKYKLF
QIELKYAGVFNLINIDSEQHPVLLSVHCPAMIFPFARKIIASCTQDAGFQPLMIDPIDFGALYHKKMSEHQN

Sequences:

>Translated_152_residues
MSTINTDTNETMPHVSVNAQYIKDLSLENPSAPSSLAALDQRPQIDLSLDINITNLSEENFYEVELNIEAIARNEKYKLF
QIELKYAGVFNLINIDSEQHPVLLSVHCPAMIFPFARKIIASCTQDAGFQPLMIDPIDFGALYHKKMSEHQN
>Mature_151_residues
STINTDTNETMPHVSVNAQYIKDLSLENPSAPSSLAALDQRPQIDLSLDINITNLSEENFYEVELNIEAIARNEKYKLFQ
IELKYAGVFNLINIDSEQHPVLLSVHCPAMIFPFARKIIASCTQDAGFQPLMIDPIDFGALYHKKMSEHQN

Specific function: One of the proteins required for the normal export of preproteins out of the cell cytoplasm. It is a molecular chaperone that binds to a subset of precursor proteins, maintaining them in a translocation-competent state. It also specifically binds to its r

COG id: COG1952

COG function: function code U; Preprotein translocase subunit SecB

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the secB family

Homologues:

Organism=Escherichia coli, GI1790038, Length=145, Percent_Identity=28.9655172413793, Blast_Score=76, Evalue=8e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): SECB_RICAE (C3PMB1)

Other databases:

- EMBL:   CP001612
- RefSeq:   YP_002844814.1
- GeneID:   7815347
- GenomeReviews:   CP001612_GR
- KEGG:   raf:RAF_ORF0096
- OMA:   GFPPLMI
- ProtClustDB:   PRK05751
- GO:   GO:0005737
- HAMAP:   MF_00821
- InterPro:   IPR003708
- Gene3D:   G3DSA:3.10.420.10
- PRINTS:   PR01594
- TIGRFAMs:   TIGR00809

Pfam domain/function: PF02556 SecB; SSF54611 SecB

EC number: NA

Molecular weight: Translated: 17168; Mature: 17036

Theoretical pI: Translated: 4.50; Mature: 4.50

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSTINTDTNETMPHVSVNAQYIKDLSLENPSAPSSLAALDQRPQIDLSLDINITNLSEEN
CCCCCCCCCCCCCEEECCHHHHEECCCCCCCCCCHHHHHCCCCCEEEEEEEEEEECCCCC
FYEVELNIEAIARNEKYKLFQIELKYAGVFNLINIDSEQHPVLLSVHCPAMIFPFARKII
EEEEEEEEEEEECCCCEEEEEEEEEECCEEEEEECCCCCCCEEEEECCCHHHHHHHHHHH
ASCTQDAGFQPLMIDPIDFGALYHKKMSEHQN
HHHCCCCCCCCEEECCCCCHHHHHHHHHHCCC
>Mature Secondary Structure 
STINTDTNETMPHVSVNAQYIKDLSLENPSAPSSLAALDQRPQIDLSLDINITNLSEEN
CCCCCCCCCCCCEEECCHHHHEECCCCCCCCCCHHHHHCCCCCEEEEEEEEEEECCCCC
FYEVELNIEAIARNEKYKLFQIELKYAGVFNLINIDSEQHPVLLSVHCPAMIFPFARKII
EEEEEEEEEEEECCCCEEEEEEEEEECCEEEEEECCCCCCCEEEEECCCHHHHHHHHHHH
ASCTQDAGFQPLMIDPIDFGALYHKKMSEHQN
HHHCCCCCCCCEEECCCCCHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA