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The map label for this gene is dcd

Identifier: 229586312

GI number: 229586312

Start: 94987

End: 95553

Strand: Direct

Name: dcd

Synonym: RAF_ORF0095

Alternate gene names: 229586312

Gene position: 94987-95553 (Clockwise)

Preceding gene: 229586309

Following gene: 229586313

Centisome position: 7.43

GC content: 33.86

Gene sequence:

>567_bases
ATGGCTATAATGTCAGATAAGTGGATAAAAGAAGCTGTTATAAATCACAGTATGATAAGGCCCTTTGCGGAAAAGCAGGT
AAGAGTGCATAATAAAGAAAAGATTATTTCTTACGGCTTATCTTCTTACGGCTATGATGCTAGAGTATCTAATGAATTTA
AAATATTCACCAATATAAATTCTACTACGGTTGATCCAAAAAATTTCAGTGAATATAATTTAGTTGATAGAGAAGTAGAT
GTGTGTATTATCCCACCCAATAGCTTTGCCCTTGGCAGAACTATAGAATATTTTAAAATACCGCGTGATGTATTAGTTAT
TTGTGTCGGCAAGTCTACTTATGCAAGATGCGGTATAATAGTAAATGTGACTCCGTTAGAACCGGAGTGGGAAGGACATG
TAACTTTAGAGTTTTCTAATACTACTCCATTACCTGCTAAAATATATGCAAATGAAGGAGCTTGTCAGTTTTTATTTTTA
AAGAGTGATCAAATTTGTGATACTTCATATGCCGATCGCCAAGGAAAATATATGAAACAAGTAGGCGTAACTTTACCGCT
AACATAA

Upstream 100 bases:

>100_bases
TATCACTTAGTCTCAGACTTATAGTTTTAAAGAAAAATTTTGTATTGTAAATAATTATGAGTTATAATCATTAGTTTATT
AATTAAATCAAGTTTTGATT

Downstream 100 bases:

>100_bases
CTTTTTTATGTAGAAAATTATATTAAATTTTTAATAAGGATTTTTATGAGTACAATAAACACCGATACTAATGAGACAAT
GCCGCATGTTTCCGTTAATG

Product: deoxycytidine triphosphate deaminase

Products: NA

Alternate protein names: dCTP deaminase

Number of amino acids: Translated: 188; Mature: 187

Protein sequence:

>188_residues
MAIMSDKWIKEAVINHSMIRPFAEKQVRVHNKEKIISYGLSSYGYDARVSNEFKIFTNINSTTVDPKNFSEYNLVDREVD
VCIIPPNSFALGRTIEYFKIPRDVLVICVGKSTYARCGIIVNVTPLEPEWEGHVTLEFSNTTPLPAKIYANEGACQFLFL
KSDQICDTSYADRQGKYMKQVGVTLPLT

Sequences:

>Translated_188_residues
MAIMSDKWIKEAVINHSMIRPFAEKQVRVHNKEKIISYGLSSYGYDARVSNEFKIFTNINSTTVDPKNFSEYNLVDREVD
VCIIPPNSFALGRTIEYFKIPRDVLVICVGKSTYARCGIIVNVTPLEPEWEGHVTLEFSNTTPLPAKIYANEGACQFLFL
KSDQICDTSYADRQGKYMKQVGVTLPLT
>Mature_187_residues
AIMSDKWIKEAVINHSMIRPFAEKQVRVHNKEKIISYGLSSYGYDARVSNEFKIFTNINSTTVDPKNFSEYNLVDREVDV
CIIPPNSFALGRTIEYFKIPRDVLVICVGKSTYARCGIIVNVTPLEPEWEGHVTLEFSNTTPLPAKIYANEGACQFLFLK
SDQICDTSYADRQGKYMKQVGVTLPLT

Specific function: De novo synthesis of thymidylate. [C]

COG id: COG0717

COG function: function code F; Deoxycytidine deaminase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the dCTP deaminase family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): DCD_RICAE (C3PMB0)

Other databases:

- EMBL:   CP001612
- RefSeq:   YP_002844813.1
- ProteinModelPortal:   C3PMB0
- SMR:   C3PMB0
- GeneID:   7815346
- GenomeReviews:   CP001612_GR
- KEGG:   raf:RAF_ORF0095
- OMA:   NITVICI
- ProtClustDB:   PRK00416
- HAMAP:   MF_00146
- InterPro:   IPR011962
- TIGRFAMs:   TIGR02274

Pfam domain/function: NA

EC number: =3.5.4.13

Molecular weight: Translated: 21328; Mature: 21197

Theoretical pI: Translated: 7.34; Mature: 7.34

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.7 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
2.7 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAIMSDKWIKEAVINHSMIRPFAEKQVRVHNKEKIISYGLSSYGYDARVSNEFKIFTNIN
CCCCCHHHHHHHHHHHHHCCHHHHHHEEECCHHHHEECCCCCCCCCEEECCCEEEEEECC
STTVDPKNFSEYNLVDREVDVCIIPPNSFALGRTIEYFKIPRDVLVICVGKSTYARCGII
CCEECCCCCCCCCEECCCCCEEEECCCCCCCCCEEEEEECCCEEEEEEECCCCCCEEEEE
VNVTPLEPEWEGHVTLEFSNTTPLPAKIYANEGACQFLFLKSDQICDTSYADRQGKYMKQ
EEEECCCCCCCCEEEEEECCCCCCCEEEEECCCCEEEEEEECCCCCCCCCCCCCCHHHHH
VGVTLPLT
CCCEECCC
>Mature Secondary Structure 
AIMSDKWIKEAVINHSMIRPFAEKQVRVHNKEKIISYGLSSYGYDARVSNEFKIFTNIN
CCCCHHHHHHHHHHHHHCCHHHHHHEEECCHHHHEECCCCCCCCCEEECCCEEEEEECC
STTVDPKNFSEYNLVDREVDVCIIPPNSFALGRTIEYFKIPRDVLVICVGKSTYARCGII
CCEECCCCCCCCCEECCCCCEEEECCCCCCCCCEEEEEECCCEEEEEEECCCCCCEEEEE
VNVTPLEPEWEGHVTLEFSNTTPLPAKIYANEGACQFLFLKSDQICDTSYADRQGKYMKQ
EEEECCCCCCCCEEEEEECCCCCCCEEEEECCCCEEEEEEECCCCCCCCCCCCCCHHHHH
VGVTLPLT
CCCEECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA