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The map label for this gene is tfe

Identifier: 227828126

GI number: 227828126

Start: 1711583

End: 1712119

Strand: Direct

Name: tfe

Synonym: M1425_1864

Alternate gene names: 227828126

Gene position: 1711583-1712119 (Clockwise)

Preceding gene: 227828125

Following gene: 227828127

Centisome position: 65.61

GC content: 31.28

Gene sequence:

>537_bases
ATGGTTAACGCAGAGGACTTGTTTATTAATCTAGCGAAAAGTTTGTTGGGAGATGACGTGATTGATGTTTTGCGAGTGCT
ACTAGAAAAAGGGACTGAAATGACAGATGAAGAAATAGCGAATCAGCTTAATATAAAGGTTAATGATGTGAGAAAGAAAT
TGAATTTGCTGGAGGAGCAAGGTTTTGTAAGTTATAGGAAAACAAGGGATAAAGATAGCGGATGGTTCATTTATTATTGG
AAGCCTAACATAGATCAAATTAATGAGATACTATTAAATAGAAAAAGGTTAATATTGGATAAATTAAAATCAAGATTAGA
ATATGAGAAAAATAATACATTCTTCATATGTCCACAAGATAATAGTAGATATTCATTTGAGGAAGCGTTTGAAAATGAAT
TTAAATGTTTGAAATGTGGATCTCAACTAACCTACTATGATACGGAAAAGATTAAGTCATTCTTGGAGCAAAAAATAAGA
CAAATAGAGGAAGAGATAGATAAGGAGACAAAACTTGGGGCAAATAAAAGTCATTGA

Upstream 100 bases:

>100_bases
TTTTTAGACAGAATTTATAAGGGACGAGAGCTATATATGGAATTTGGAGATGCGAAAATAAAGATATTACCTCAGAATGT
TGGCAAGAAGGTGATAAGAA

Downstream 100 bases:

>100_bases
TCTATTTTCTGGAGCAGGAGGATTTTCATTAGGTTTCAAAAAATTAGGAATAGAGCCTAAATTAGCAATAGATATAAATC
ACGCTGCAGCTAGAACATAT

Product: transcription factor TFIIE, subunit alpha

Products: NA

Alternate protein names: TFE; TFIIE subunit alpha homolog; Transcription initiation factor TFIIE

Number of amino acids: Translated: 178; Mature: 178

Protein sequence:

>178_residues
MVNAEDLFINLAKSLLGDDVIDVLRVLLEKGTEMTDEEIANQLNIKVNDVRKKLNLLEEQGFVSYRKTRDKDSGWFIYYW
KPNIDQINEILLNRKRLILDKLKSRLEYEKNNTFFICPQDNSRYSFEEAFENEFKCLKCGSQLTYYDTEKIKSFLEQKIR
QIEEEIDKETKLGANKSH

Sequences:

>Translated_178_residues
MVNAEDLFINLAKSLLGDDVIDVLRVLLEKGTEMTDEEIANQLNIKVNDVRKKLNLLEEQGFVSYRKTRDKDSGWFIYYW
KPNIDQINEILLNRKRLILDKLKSRLEYEKNNTFFICPQDNSRYSFEEAFENEFKCLKCGSQLTYYDTEKIKSFLEQKIR
QIEEEIDKETKLGANKSH
>Mature_178_residues
MVNAEDLFINLAKSLLGDDVIDVLRVLLEKGTEMTDEEIANQLNIKVNDVRKKLNLLEEQGFVSYRKTRDKDSGWFIYYW
KPNIDQINEILLNRKRLILDKLKSRLEYEKNNTFFICPQDNSRYSFEEAFENEFKCLKCGSQLTYYDTEKIKSFLEQKIR
QIEEEIDKETKLGANKSH

Specific function: Transcription factor that plays a role in the activation of archaeal genes transcribed by RNA polymerase. Facilitates transcription initiation by enhancing TATA-box recognition by TATA-box-binding protein (tbp), and transcription factor B (tfb) and RNA po

COG id: COG1675

COG function: function code K; Transcription initiation factor IIE, alpha subunit

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH TFE/IIEalpha-type domain

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): TFE_SULIA (C3MZJ0)

Other databases:

- EMBL:   CP001401
- RefSeq:   YP_002843867.1
- GeneID:   7813029
- GenomeReviews:   CP001401_GR
- KEGG:   sim:M1627_1951
- OMA:   LFILYEN
- ProtClustDB:   CLSK802640
- HAMAP:   MF_01909
- InterPro:   IPR016481
- InterPro:   IPR017919
- InterPro:   IPR011991
- Gene3D:   G3DSA:1.10.10.10
- PIRSF:   PIRSF006373

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 21146; Mature: 21146

Theoretical pI: Translated: 5.03; Mature: 5.03

Prosite motif: PS51344 HTH_TFE_IIE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVNAEDLFINLAKSLLGDDVIDVLRVLLEKGTEMTDEEIANQLNIKVNDVRKKLNLLEEQ
CCCHHHHHHHHHHHHHCHHHHHHHHHHHHCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHC
GFVSYRKTRDKDSGWFIYYWKPNIDQINEILLNRKRLILDKLKSRLEYEKNNTFFICPQD
CCHHHHHCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCC
NSRYSFEEAFENEFKCLKCGSQLTYYDTEKIKSFLEQKIRQIEEEIDKETKLGANKSH
CCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MVNAEDLFINLAKSLLGDDVIDVLRVLLEKGTEMTDEEIANQLNIKVNDVRKKLNLLEEQ
CCCHHHHHHHHHHHHHCHHHHHHHHHHHHCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHC
GFVSYRKTRDKDSGWFIYYWKPNIDQINEILLNRKRLILDKLKSRLEYEKNNTFFICPQD
CCHHHHHCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCC
NSRYSFEEAFENEFKCLKCGSQLTYYDTEKIKSFLEQKIRQIEEEIDKETKLGANKSH
CCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA