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The map label for this gene is 227828125

Identifier: 227828125

GI number: 227828125

Start: 1711054

End: 1711590

Strand: Direct

Name: 227828125

Synonym: M1425_1863

Alternate gene names: NA

Gene position: 1711054-1711590 (Clockwise)

Preceding gene: 227828124

Following gene: 227828126

Centisome position: 65.59

GC content: 32.77

Gene sequence:

>537_bases
TTGAAAGATATATATGTTTTAAGGTTAGGCCATAGACCAGCTAGAGATAAAAGAGTGACAACACATGTAATCTTAGTAGC
AAGAGCTTTCGGAGCTAAGGGTGTTTATATCGAAGGTAAAGATGAAAAAATGATAAAATCTATATCGAAAGTCATAGATA
GTTGGGGTGGATCGTCATATTTTTTGGTAAAGGAAATCGAAAACGGCAAAAATATTGTAAATGAATGGAAAGAAAAAGGA
GGTACGGTAATACACTTAACAATGTATGGAATTAATATTAACGATCTTCAAGATAAGCTTGATAAAATAAAATATCCTCT
ATTAATAATTGTAGGAGCAGAAAAAGTTGAAGGTTGGTATTATCGTAATGTGGATTACAACATAGCAATAGGGAATCAGC
CACATTCTGAAGTAGCAGCACTGGCAATTTTTTTAGACAGAATTTATAAGGGACGAGAGCTATATATGGAATTTGGAGAT
GCGAAAATAAAGATATTACCTCAGAATGTTGGCAAGAAGGTGATAAGAAATGGTTAA

Upstream 100 bases:

>100_bases
TATACTCCCCCATATTCGATGTCATACCTATATCAGCTTTAAAGAGAACAAATCTTGAATTATTAAGGGAGAGGATATAC
CAGCTAACAACACAGTTGAG

Downstream 100 bases:

>100_bases
CGCAGAGGACTTGTTTATTAATCTAGCGAAAAGTTTGTTGGGAGATGACGTGATTGATGTTTTGCGAGTGCTACTAGAAA
AAGGGACTGAAATGACAGAT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 178; Mature: 178

Protein sequence:

>178_residues
MKDIYVLRLGHRPARDKRVTTHVILVARAFGAKGVYIEGKDEKMIKSISKVIDSWGGSSYFLVKEIENGKNIVNEWKEKG
GTVIHLTMYGININDLQDKLDKIKYPLLIIVGAEKVEGWYYRNVDYNIAIGNQPHSEVAALAIFLDRIYKGRELYMEFGD
AKIKILPQNVGKKVIRNG

Sequences:

>Translated_178_residues
MKDIYVLRLGHRPARDKRVTTHVILVARAFGAKGVYIEGKDEKMIKSISKVIDSWGGSSYFLVKEIENGKNIVNEWKEKG
GTVIHLTMYGININDLQDKLDKIKYPLLIIVGAEKVEGWYYRNVDYNIAIGNQPHSEVAALAIFLDRIYKGRELYMEFGD
AKIKILPQNVGKKVIRNG
>Mature_178_residues
MKDIYVLRLGHRPARDKRVTTHVILVARAFGAKGVYIEGKDEKMIKSISKVIDSWGGSSYFLVKEIENGKNIVNEWKEKG
GTVIHLTMYGININDLQDKLDKIKYPLLIIVGAEKVEGWYYRNVDYNIAIGNQPHSEVAALAIFLDRIYKGRELYMEFGD
AKIKILPQNVGKKVIRNG

Specific function: Specifically catalyzes the AdoMet-dependent 2'-O-ribose methylation of cytidine at position 56 in tRNAs [H]

COG id: COG1303

COG function: function code S; Uncharacterized protein conserved in archaea

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the aTrm56 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002845
- ProDom:   PD016584 [H]

Pfam domain/function: PF01994 DUF127 [H]

EC number: NA

Molecular weight: Translated: 20267; Mature: 20267

Theoretical pI: Translated: 9.99; Mature: 9.99

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKDIYVLRLGHRPARDKRVTTHVILVARAFGAKGVYIEGKDEKMIKSISKVIDSWGGSSY
CCCEEEEEECCCCCCCCCHHHHEEEEEHHCCCCEEEEECCCHHHHHHHHHHHHCCCCCEE
FLVKEIENGKNIVNEWKEKGGTVIHLTMYGININDLQDKLDKIKYPLLIIVGAEKVEGWY
EEEEECCCCHHHHHHHHHCCCCEEEEEEEECCHHHHHHHHHHCCCCEEEEEECHHCCCEE
YRNVDYNIAIGNQPHSEVAALAIFLDRIYKGRELYMEFGDAKIKILPQNVGKKVIRNG
EECCEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEECCEEEEEECCHHCHHHHCCC
>Mature Secondary Structure
MKDIYVLRLGHRPARDKRVTTHVILVARAFGAKGVYIEGKDEKMIKSISKVIDSWGGSSY
CCCEEEEEECCCCCCCCCHHHHEEEEEHHCCCCEEEEECCCHHHHHHHHHHHHCCCCCEE
FLVKEIENGKNIVNEWKEKGGTVIHLTMYGININDLQDKLDKIKYPLLIIVGAEKVEGWY
EEEEECCCCHHHHHHHHHCCCCEEEEEEEECCHHHHHHHHHHCCCCEEEEEECHHCCCEE
YRNVDYNIAIGNQPHSEVAALAIFLDRIYKGRELYMEFGDAKIKILPQNVGKKVIRNG
EECCEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEECCEEEEEECCHHCHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11427726 [H]