Click here to switch to the map view.

The map label for this gene is ygcB [C]

Identifier: 227827217

GI number: 227827217

Start: 865014

End: 866519

Strand: Direct

Name: ygcB [C]

Synonym: M1425_0903

Alternate gene names: 227827217

Gene position: 865014-866519 (Clockwise)

Preceding gene: 227827216

Following gene: 227827218

Centisome position: 33.16

GC content: 37.38

Gene sequence:

>1506_bases
ATGTTGTCTTTAGCTGACTTCTATAACGATTTCATAACTCGTCATGGTTTTGAGGAGAGGAAGGGTATTGAGGAGACTTT
ACTAAATTTGGAAAACGGGCATAGCGTTATACTTAAGGCTCCCACTGGTTACGGTAAAACAACGTTAACTATGATTTTAG
CTAATGCCGTTAGTAGTGATATTGACCTAGGTAGTAGGGTTATTCACGTATTGCCGTATAGGGCTATCGTGCAAGATTTG
TATCTAAAGCTGAAAAATTACGCTGATAGAGGGGTAATTTACACTAAGAGTATTGGTGCCCAAGACATGGATTATCAAGA
TTCCCCTTTTTTCATGAAGAAAGTTAACGTTACGACTCTAGATACCTTCATTCTCAATTTGTTTAAATTACCTACTGTTG
ATTTTAAGTTAATTTTTAAAAATTACGGTTCTCATTATGAGTTCCCTAGGGCGTTAATATATAGTAGTATTGTAATATTT
GATGAATTTCACTTATTGGGAGAGGATGGTAAGAGTTTAGGGGCTGGACTTGCCGCTTTAGAAGTTTTGAAGGATGCGGG
TGTTCCGATAGTAGTTACTTCAGCTACCATAGATAAGGGGTTGGAGAGGGTTTTGATGAACAAGCTGGGTAAGAATGTAA
AGGTAGTTAACGCGAATGATTTTAAAATTGATAGAAAGATATACGTTAACGTATTGGAGAATGATGAGATTTCCATTACT
GAGGTAAAGGTAAAAGAGGGTAAGAGGGTTCTTTTGGTTTACAATACGAGAATGGGGGCGATTGAAGCCTATAAGAAGTT
AAAGGGAAGGGGATTATCTCCTATTCTAATTCACAGTAAGTTCAGTAAAAAGGATAGGATAGATAAAGTGAACAAGATAA
ACGAGGCAAAGCTGGTAGTTTCAACTCAGGTTATAGAGGCCGGTATTGATACTTCTTTTGACGTTTTAATAACTGAAGCT
TCTCCCTCTCATAATCTAATTCAAAGGGCTGGTAGGGTTGCGAGGTACGGTAAGGGAGGAAGAGGGAAATTAGAGGGCGA
GGTTTACATTTTCCCGTTTAGTGGAAAGGTTTATGTTGAGAGGGAGGTTAAGGAGACTGTGGAAAGGGTAAGGAAACTAA
AGACTATTGATGAGAACTTACTCATTGAAAGGGATTACACAGAGGTGATTGATTCGATTCTGGCTAAGGATCTATCTGTA
ATAGATAACTCCGTTTTCGTGGACTCTAAAAAGGTGAAGTCGATATACGAGGAGATTTGTTCTATTACTAGGAATGCAAG
TATCATATTGGGATTTCCGCCAAACAGTAATGACGTTAATGATGCCATACCCTTAACTGAGGAAGAGGCAATTAAAATAA
TAGAGAGTAAGGGAAGTTCTGCGTTTGTGGGGAATGGTAATGTTAAATTATATAACAAGAAATGCCTTCAATTGGAAATG
TTGAAGAATGATATTTTAGGAGTTAGGATTCAAGATTATAATAGTGAAATAGGTGGTGTGTATTGA

Upstream 100 bases:

>100_bases
GGAGGTCCAATAAGGTACATTTTACCGATAACTACCTATCCCTTAGCTAGCAAGGAGGTTGAAGTTGAAGCTAAGGAAGC
ATATGAGGTTGGTGGGGAAT

Downstream 100 bases:

>100_bases
TCAAGCCTTGCGCTTATGAGAAACAAGGTTTAATTGATCACGCTATTGGTTCTTATAGGGTTTTAGATGGTAAAATAAGT
GAGTCTTATTATAAGATTAT

Product: CRISPR-associated helicase Cas3

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 501; Mature: 501

Protein sequence:

>501_residues
MLSLADFYNDFITRHGFEERKGIEETLLNLENGHSVILKAPTGYGKTTLTMILANAVSSDIDLGSRVIHVLPYRAIVQDL
YLKLKNYADRGVIYTKSIGAQDMDYQDSPFFMKKVNVTTLDTFILNLFKLPTVDFKLIFKNYGSHYEFPRALIYSSIVIF
DEFHLLGEDGKSLGAGLAALEVLKDAGVPIVVTSATIDKGLERVLMNKLGKNVKVVNANDFKIDRKIYVNVLENDEISIT
EVKVKEGKRVLLVYNTRMGAIEAYKKLKGRGLSPILIHSKFSKKDRIDKVNKINEAKLVVSTQVIEAGIDTSFDVLITEA
SPSHNLIQRAGRVARYGKGGRGKLEGEVYIFPFSGKVYVEREVKETVERVRKLKTIDENLLIERDYTEVIDSILAKDLSV
IDNSVFVDSKKVKSIYEEICSITRNASIILGFPPNSNDVNDAIPLTEEEAIKIIESKGSSAFVGNGNVKLYNKKCLQLEM
LKNDILGVRIQDYNSEIGGVY

Sequences:

>Translated_501_residues
MLSLADFYNDFITRHGFEERKGIEETLLNLENGHSVILKAPTGYGKTTLTMILANAVSSDIDLGSRVIHVLPYRAIVQDL
YLKLKNYADRGVIYTKSIGAQDMDYQDSPFFMKKVNVTTLDTFILNLFKLPTVDFKLIFKNYGSHYEFPRALIYSSIVIF
DEFHLLGEDGKSLGAGLAALEVLKDAGVPIVVTSATIDKGLERVLMNKLGKNVKVVNANDFKIDRKIYVNVLENDEISIT
EVKVKEGKRVLLVYNTRMGAIEAYKKLKGRGLSPILIHSKFSKKDRIDKVNKINEAKLVVSTQVIEAGIDTSFDVLITEA
SPSHNLIQRAGRVARYGKGGRGKLEGEVYIFPFSGKVYVEREVKETVERVRKLKTIDENLLIERDYTEVIDSILAKDLSV
IDNSVFVDSKKVKSIYEEICSITRNASIILGFPPNSNDVNDAIPLTEEEAIKIIESKGSSAFVGNGNVKLYNKKCLQLEM
LKNDILGVRIQDYNSEIGGVY
>Mature_501_residues
MLSLADFYNDFITRHGFEERKGIEETLLNLENGHSVILKAPTGYGKTTLTMILANAVSSDIDLGSRVIHVLPYRAIVQDL
YLKLKNYADRGVIYTKSIGAQDMDYQDSPFFMKKVNVTTLDTFILNLFKLPTVDFKLIFKNYGSHYEFPRALIYSSIVIF
DEFHLLGEDGKSLGAGLAALEVLKDAGVPIVVTSATIDKGLERVLMNKLGKNVKVVNANDFKIDRKIYVNVLENDEISIT
EVKVKEGKRVLLVYNTRMGAIEAYKKLKGRGLSPILIHSKFSKKDRIDKVNKINEAKLVVSTQVIEAGIDTSFDVLITEA
SPSHNLIQRAGRVARYGKGGRGKLEGEVYIFPFSGKVYVEREVKETVERVRKLKTIDENLLIERDYTEVIDSILAKDLSV
IDNSVFVDSKKVKSIYEEICSITRNASIILGFPPNSNDVNDAIPLTEEEAIKIIESKGSSAFVGNGNVKLYNKKCLQLEM
LKNDILGVRIQDYNSEIGGVY

Specific function: Unknown

COG id: COG1203

COG function: function code R; Predicted helicases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 helicase C-terminal domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014001
- InterPro:   IPR011545
- InterPro:   IPR001650
- InterPro:   IPR006474
- InterPro:   IPR014021 [H]

Pfam domain/function: PF00270 DEAD; PF00271 Helicase_C [H]

EC number: NA

Molecular weight: Translated: 56088; Mature: 56088

Theoretical pI: Translated: 8.46; Mature: 8.46

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLSLADFYNDFITRHGFEERKGIEETLLNLENGHSVILKAPTGYGKTTLTMILANAVSSD
CCCHHHHHHHHHHHCCCHHHCCHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCC
IDLGSRVIHVLPYRAIVQDLYLKLKNYADRGVIYTKSIGAQDMDYQDSPFFMKKVNVTTL
CCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCEEEEECCHHH
DTFILNLFKLPTVDFKLIFKNYGSHYEFPRALIYSSIVIFDEFHLLGEDGKSLGAGLAAL
HHHHHHHHHCCCCCEEEHEHHCCCCCCCHHHHHHHHHHEEEHHEEECCCCCHHHHHHHHH
EVLKDAGVPIVVTSATIDKGLERVLMNKLGKNVKVVNANDFKIDRKIYVNVLENDEISIT
HHHHHCCCCEEEECHHHHHHHHHHHHHHCCCCEEEEECCCEEECCEEEEEEECCCCEEEE
EVKVKEGKRVLLVYNTRMGAIEAYKKLKGRGLSPILIHSKFSKKDRIDKVNKINEAKLVV
EEEECCCCEEEEEEECCCCHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHCCCCCEEEE
STQVIEAGIDTSFDVLITEASPSHNLIQRAGRVARYGKGGRGKLEGEVYIFPFSGKVYVE
EHHHHHHCCCCCEEEEEECCCCCHHHHHHCCHHHHCCCCCCCEECCEEEEEECCCEEEEE
REVKETVERVRKLKTIDENLLIERDYTEVIDSILAKDLSVIDNSVFVDSKKVKSIYEEIC
HHHHHHHHHHHHHHHCCHHHEEECCHHHHHHHHHHHHHHHHCCCEEECHHHHHHHHHHHH
SITRNASIILGFPPNSNDVNDAIPLTEEEAIKIIESKGSSAFVGNGNVKLYNKKCLQLEM
HHCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHCCCCEEEEECCCEEEEECCHHHHHH
LKNDILGVRIQDYNSEIGGVY
HHCCCEEEEEECCCCCCCCCC
>Mature Secondary Structure
MLSLADFYNDFITRHGFEERKGIEETLLNLENGHSVILKAPTGYGKTTLTMILANAVSSD
CCCHHHHHHHHHHHCCCHHHCCHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCC
IDLGSRVIHVLPYRAIVQDLYLKLKNYADRGVIYTKSIGAQDMDYQDSPFFMKKVNVTTL
CCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCEEEEECCHHH
DTFILNLFKLPTVDFKLIFKNYGSHYEFPRALIYSSIVIFDEFHLLGEDGKSLGAGLAAL
HHHHHHHHHCCCCCEEEHEHHCCCCCCCHHHHHHHHHHEEEHHEEECCCCCHHHHHHHHH
EVLKDAGVPIVVTSATIDKGLERVLMNKLGKNVKVVNANDFKIDRKIYVNVLENDEISIT
HHHHHCCCCEEEECHHHHHHHHHHHHHHCCCCEEEEECCCEEECCEEEEEEECCCCEEEE
EVKVKEGKRVLLVYNTRMGAIEAYKKLKGRGLSPILIHSKFSKKDRIDKVNKINEAKLVV
EEEECCCCEEEEEEECCCCHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHCCCCCEEEE
STQVIEAGIDTSFDVLITEASPSHNLIQRAGRVARYGKGGRGKLEGEVYIFPFSGKVYVE
EHHHHHHCCCCCEEEEEECCCCCHHHHHHCCHHHHCCCCCCCEECCEEEEEECCCEEEEE
REVKETVERVRKLKTIDENLLIERDYTEVIDSILAKDLSVIDNSVFVDSKKVKSIYEEIC
HHHHHHHHHHHHHHHCCHHHEEECCHHHHHHHHHHHHHHHHCCCEEECHHHHHHHHHHHH
SITRNASIILGFPPNSNDVNDAIPLTEEEAIKIIESKGSSAFVGNGNVKLYNKKCLQLEM
HHCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHCCCCEEEEECCCEEEEECCHHHHHH
LKNDILGVRIQDYNSEIGGVY
HHCCCEEEEEECCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]