Click here to switch to the map view.

The map label for this gene is 227827216

Identifier: 227827216

GI number: 227827216

Start: 864308

End: 865030

Strand: Direct

Name: 227827216

Synonym: M1425_0902

Alternate gene names: NA

Gene position: 864308-865030 (Clockwise)

Preceding gene: 227827215

Following gene: 227827217

Centisome position: 33.13

GC content: 41.08

Gene sequence:

>723_bases
TTGATCTACTCTAAGGTTTTTTTAAAACTCCATTGGGGTTTTTCCGTAGTTAAGCCCTCAGCTGCTAAGGCAAAGTCAGG
TTTCTATTTACCACCTCCTACTACATTGATTGGAGCTTTATCTTACGGTAAATTTAGGGGAGTTGATAATACTAACCTAG
GCAAGGTTTACGGTAGTCCGGCGTATAATTTTAGGAACGTTATGGCTACTGCTAGATTGGAGTCTGAGGGAGCTTACACT
GAGGACATTGTTAGAAACGTTATATCGTATTTTCAACGTAAGGAGAGGCGAGAGAATCCGAGATACATTTACGGAGTGAT
CCCTACCGGTAAAGTGTATATACCTAACGGTATGTTAGTTGTGGTCTACGTAACTGATTCCATGAGTAAGGAGGAGCTGG
AAAAACTCAGCTGGAGTATAACTAGGATAGGAGGTAAGGAGTGTTTGGTGAGTGTGGAGAACGTTGAAATTGGGGAGGCT
AAGAAGGTTTCAGGTAGGGTTAAAACTAGCTATTATTTTAGAGATACTGTAAAGGTAGTAGGTAAGAAGGAGTTTTTGGA
ATATGTTACTTTTTGGGAAGAGAACGGGTATATATGGGGAAAGGAGGGAGGTCCAATAAGGTACATTTTACCGATAACTA
CCTATCCCTTAGCTAGCAAGGAGGTTGAAGTTGAAGCTAAGGAAGCATATGAGGTTGGTGGGGAATATGTTGTCTTTAGC
TGA

Upstream 100 bases:

>100_bases
CAACAACGAGGGTATAGAAGTGGGTGAAGGGGCTACAGTACTGTCAAGTGTTGAGGACTTAGTATTTAAATTAAAGGAAA
AGTAGAGGGGCAAGAGAGAT

Downstream 100 bases:

>100_bases
CTTCTATAACGATTTCATAACTCGTCATGGTTTTGAGGAGAGGAAGGGTATTGAGGAGACTTTACTAAATTTGGAAAACG
GGCATAGCGTTATACTTAAG

Product: CRISPR-associated protein Cas5 family

Products: NA

Alternate protein names: CRISPR-Associated Family

Number of amino acids: Translated: 240; Mature: 240

Protein sequence:

>240_residues
MIYSKVFLKLHWGFSVVKPSAAKAKSGFYLPPPTTLIGALSYGKFRGVDNTNLGKVYGSPAYNFRNVMATARLESEGAYT
EDIVRNVISYFQRKERRENPRYIYGVIPTGKVYIPNGMLVVVYVTDSMSKEELEKLSWSITRIGGKECLVSVENVEIGEA
KKVSGRVKTSYYFRDTVKVVGKKEFLEYVTFWEENGYIWGKEGGPIRYILPITTYPLASKEVEVEAKEAYEVGGEYVVFS

Sequences:

>Translated_240_residues
MIYSKVFLKLHWGFSVVKPSAAKAKSGFYLPPPTTLIGALSYGKFRGVDNTNLGKVYGSPAYNFRNVMATARLESEGAYT
EDIVRNVISYFQRKERRENPRYIYGVIPTGKVYIPNGMLVVVYVTDSMSKEELEKLSWSITRIGGKECLVSVENVEIGEA
KKVSGRVKTSYYFRDTVKVVGKKEFLEYVTFWEENGYIWGKEGGPIRYILPITTYPLASKEVEVEAKEAYEVGGEYVVFS
>Mature_240_residues
MIYSKVFLKLHWGFSVVKPSAAKAKSGFYLPPPTTLIGALSYGKFRGVDNTNLGKVYGSPAYNFRNVMATARLESEGAYT
EDIVRNVISYFQRKERRENPRYIYGVIPTGKVYIPNGMLVVVYVTDSMSKEELEKLSWSITRIGGKECLVSVENVEIGEA
KKVSGRVKTSYYFRDTVKVVGKKEFLEYVTFWEENGYIWGKEGGPIRYILPITTYPLASKEVEVEAKEAYEVGGEYVVFS

Specific function: Unknown

COG id: COG1688

COG function: function code L; Uncharacterized protein predicted to be involved in DNA repair (RAMP superfamily)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 27167; Mature: 27167

Theoretical pI: Translated: 9.43; Mature: 9.43

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIYSKVFLKLHWGFSVVKPSAAKAKSGFYLPPPTTLIGALSYGKFRGVDNTNLGKVYGSP
CCCCEEEEEEECCEEEECCCCHHCCCCEECCCCHHHHHHHCCCEECCCCCCCCCEEECCC
AYNFRNVMATARLESEGAYTEDIVRNVISYFQRKERRENPRYIYGVIPTGKVYIPNGMLV
CCHHHHHHEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCEEEECCCEEE
VVYVTDSMSKEELEKLSWSITRIGGKECLVSVENVEIGEAKKVSGRVKTSYYFRDTVKVV
EEEEECCCCHHHHHHHHHEEEEECCHHEEEEECCCCCCCCHHCCCEEEEEEEEEHHHHHH
GKKEFLEYVTFWEENGYIWGKEGGPIRYILPITTYPLASKEVEVEAKEAYEVGGEYVVFS
HHHHHHHHHEEECCCCEEECCCCCCEEEEEEEEECCCCCCEEEEEHHHHHHCCCCEEEEC
>Mature Secondary Structure
MIYSKVFLKLHWGFSVVKPSAAKAKSGFYLPPPTTLIGALSYGKFRGVDNTNLGKVYGSP
CCCCEEEEEEECCEEEECCCCHHCCCCEECCCCHHHHHHHCCCEECCCCCCCCCEEECCC
AYNFRNVMATARLESEGAYTEDIVRNVISYFQRKERRENPRYIYGVIPTGKVYIPNGMLV
CCHHHHHHEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCEEEECCCEEE
VVYVTDSMSKEELEKLSWSITRIGGKECLVSVENVEIGEAKKVSGRVKTSYYFRDTVKVV
EEEEECCCCHHHHHHHHHEEEEECCHHEEEEECCCCCCCCHHCCCEEEEEEEEEHHHHHH
GKKEFLEYVTFWEENGYIWGKEGGPIRYILPITTYPLASKEVEVEAKEAYEVGGEYVVFS
HHHHHHHHHEEECCCCEEECCCCCCEEEEEEEEECCCCCCEEEEEHHHHHHCCCCEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA