| Definition | Vibrio cholerae M66-2 chromosome I, complete genome. |
|---|---|
| Accession | NC_012578 |
| Length | 2,892,523 |
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The map label for this gene is pvcA
Identifier: 227082079
GI number: 227082079
Start: 2035451
End: 2037277
Strand: Direct
Name: pvcA
Synonym: VCM66_1873
Alternate gene names: NA
Gene position: 2035451-2037277 (Clockwise)
Preceding gene: 227082078
Following gene: 227082087
Centisome position: 70.37
GC content: 44.39
Gene sequence:
>1827_bases ATGCTCGATGCTCAACAAGAAACCTATGTAGAGAAGATCTCATTTATTCTTCTAAATCAACTAATTGCACAATGCAATGC CAGTTACAACGGGCTTGCTCACTTAAAAAGTCAAATTCGTAGATTTGTAAATAGCCAAGAGAAAATTAAATTACTCCTCC CCGCTTTCCCCTGTAAAACAAATAACTTAGATAAAGTACTTAGCCATACACCCGATCTCGGTGAATATGTCGTTTTAAGA AAGTTTGTTCAATGCATCCGTGACATTGAATCCGTTTATGAACCGGGTGTGACGTTTTATATCTTTTCTGACTATCATAC ATTCTCTGATTATATCTCTGTCGACTTAGACCACCATTATGATTACTCAGACAATCTGCGTAAAATGGTAGCAAACATGA ATTGCAGCGATGCGTTAAAAATTGTCAATTTCGAACATTTTGATGAATTTTCCGATCTGAAAGACACGGAATATTTTGAT GGATTACGTGAGAAGTTTGGTGATCCTGACTATGCAGAGAATTTCACTGAACTTAAATTAAAAAATAATAAGATGAATCA AACCTATCTGGGTTTGAAAAAATTCATGAATCAGGATCAGAAATTCGTTCTTGCTCCTCTCTCATACAAAGATCGCCGAC GTCGCCTTGCGGATATCGCTAAGGGGATGATGGTGCAAGGCAAAGCGCTGGATAACTTCTTGCAGCAAAAATTTGCCGAT TGCATTCGATTAAGCATTCATGAACATCCGATGATAGGTAAGAAATACTCGCTGTTTCTGTTCCATGAACGCCAATTCAA AACGCCTTGGCACAGTACTTTGCTGTTTGATGCCAGCCGCGGCGAATTCATTATTGATAGTAAAGAAAATCACTTAAAAC GTTCTGGGGTGATCTTGCCTGTCACTCATGATGGTAAGCCTTGGTGTTACCTGCAATTGAGCGCAGCCGATGAAGTGCAC GCCCATGCGCTGCGCCAAATACGGGCAGAATTACAACATGAAAAATCGGGGTTGTATTTAGAGTGCCCAGCCAATCGCGC TTCACTGGATATGCTACTTCCCAAAGAGCTCAGCCAACTGGTCAAAGAATTTGGCTCGGTTTTGCTGCGCGGTTTTGCAC CACTGGCTGACGCTGAACAGCTACAAACTTGGTACCTCAATCACCGTTCTGCTGTCACTTGGGCTTATGAGGTTAGCGTA CAAGCCTTCAAAGGCAGTGCTGGTGAGCAACCTTTACATTGGGAGCTCTCCTGCCCACCCGCTTATATGGCCGTACACCC ACATCGCTATCAATATGAAGATTACACCCCCCATGAGTACGCCGTTTACAGCGTTGCATCACCAGACTCGAATACTTGGA CCGTGGTTGACGCTGCACTCGCCGTCCTGACCATCAACGGTCAAGAGCGCGAACAGCTGCGTAACACCATCATGCACTAC AGCAACTTTTCACCTGAACATGGCGGGAATACTTTACACCCCCTCGTCCGTTACTGTTCGACATCACGCCAAGATGTGCT GCGTTGGCAAGATTTTCAGCATGCGCAGGGCTACCTCACTCATTTAGAAGGGGTCAGCGAATTAACCGAGCAGTCGCGGG TCTATCAACGCCTCAACACGTTATGTCATGACCCAAGAGTTTGCTTTGAGTACAGGCTACAAACTGGCGATTTGCTGTTG GTGAATAATTTAACCACCTTGCAAGCGAGCCATACGAGTTCGATGCATAACGAATACTGGTCTATTCATCTACAACCAGA CTCAATCAACTCACCTTGGCAGCCGCACAATCGTATTGTTGAACAAGCTGAACTCACCTCGGCTTAG
Upstream 100 bases:
>100_bases AAGATGTCATTCTCATTTGTGCACAAATTACTCAACAAGAAAACGACCGTATTGAATATGTTGAATTGCATTCAACCAAT CCAACGAATGAGGAAAATTT
Downstream 100 bases:
>100_bases GCTTCAGCCAAAGCAGCAAGTCGGTTAAGAACGCAAAAAGCCGAGGCACTCGCCTCGGCTTTCTATTAGTGTTTTCTTAT CACTCGCGATTAGCCATTTT
Product: pvcA protein
Products: NA
Alternate protein names: Pyoverdine Biosynthesis Protein PvcA; Pyoverdine Chromophore Biosynthetic Protein PvcA; Pyoverdine Biosynthesis; Siderophore Biosynthesis Protein; PvcA Protein; Pyoverdine/Dityrosine Biosynthesis Protein; Siderophore Biosynthesis-Related Protein; Clavaminate Synthase-Like Protein; Siderophore Biosynthesis Protein PvcA-Like; Pyoverdine Biosynthesis Protein PvcA-Like Protein
Number of amino acids: Translated: 608; Mature: 608
Protein sequence:
>608_residues MLDAQQETYVEKISFILLNQLIAQCNASYNGLAHLKSQIRRFVNSQEKIKLLLPAFPCKTNNLDKVLSHTPDLGEYVVLR KFVQCIRDIESVYEPGVTFYIFSDYHTFSDYISVDLDHHYDYSDNLRKMVANMNCSDALKIVNFEHFDEFSDLKDTEYFD GLREKFGDPDYAENFTELKLKNNKMNQTYLGLKKFMNQDQKFVLAPLSYKDRRRRLADIAKGMMVQGKALDNFLQQKFAD CIRLSIHEHPMIGKKYSLFLFHERQFKTPWHSTLLFDASRGEFIIDSKENHLKRSGVILPVTHDGKPWCYLQLSAADEVH AHALRQIRAELQHEKSGLYLECPANRASLDMLLPKELSQLVKEFGSVLLRGFAPLADAEQLQTWYLNHRSAVTWAYEVSV QAFKGSAGEQPLHWELSCPPAYMAVHPHRYQYEDYTPHEYAVYSVASPDSNTWTVVDAALAVLTINGQEREQLRNTIMHY SNFSPEHGGNTLHPLVRYCSTSRQDVLRWQDFQHAQGYLTHLEGVSELTEQSRVYQRLNTLCHDPRVCFEYRLQTGDLLL VNNLTTLQASHTSSMHNEYWSIHLQPDSINSPWQPHNRIVEQAELTSA
Sequences:
>Translated_608_residues MLDAQQETYVEKISFILLNQLIAQCNASYNGLAHLKSQIRRFVNSQEKIKLLLPAFPCKTNNLDKVLSHTPDLGEYVVLR KFVQCIRDIESVYEPGVTFYIFSDYHTFSDYISVDLDHHYDYSDNLRKMVANMNCSDALKIVNFEHFDEFSDLKDTEYFD GLREKFGDPDYAENFTELKLKNNKMNQTYLGLKKFMNQDQKFVLAPLSYKDRRRRLADIAKGMMVQGKALDNFLQQKFAD CIRLSIHEHPMIGKKYSLFLFHERQFKTPWHSTLLFDASRGEFIIDSKENHLKRSGVILPVTHDGKPWCYLQLSAADEVH AHALRQIRAELQHEKSGLYLECPANRASLDMLLPKELSQLVKEFGSVLLRGFAPLADAEQLQTWYLNHRSAVTWAYEVSV QAFKGSAGEQPLHWELSCPPAYMAVHPHRYQYEDYTPHEYAVYSVASPDSNTWTVVDAALAVLTINGQEREQLRNTIMHY SNFSPEHGGNTLHPLVRYCSTSRQDVLRWQDFQHAQGYLTHLEGVSELTEQSRVYQRLNTLCHDPRVCFEYRLQTGDLLL VNNLTTLQASHTSSMHNEYWSIHLQPDSINSPWQPHNRIVEQAELTSA >Mature_608_residues MLDAQQETYVEKISFILLNQLIAQCNASYNGLAHLKSQIRRFVNSQEKIKLLLPAFPCKTNNLDKVLSHTPDLGEYVVLR KFVQCIRDIESVYEPGVTFYIFSDYHTFSDYISVDLDHHYDYSDNLRKMVANMNCSDALKIVNFEHFDEFSDLKDTEYFD GLREKFGDPDYAENFTELKLKNNKMNQTYLGLKKFMNQDQKFVLAPLSYKDRRRRLADIAKGMMVQGKALDNFLQQKFAD CIRLSIHEHPMIGKKYSLFLFHERQFKTPWHSTLLFDASRGEFIIDSKENHLKRSGVILPVTHDGKPWCYLQLSAADEVH AHALRQIRAELQHEKSGLYLECPANRASLDMLLPKELSQLVKEFGSVLLRGFAPLADAEQLQTWYLNHRSAVTWAYEVSV QAFKGSAGEQPLHWELSCPPAYMAVHPHRYQYEDYTPHEYAVYSVASPDSNTWTVVDAALAVLTINGQEREQLRNTIMHY SNFSPEHGGNTLHPLVRYCSTSRQDVLRWQDFQHAQGYLTHLEGVSELTEQSRVYQRLNTLCHDPRVCFEYRLQTGDLLL VNNLTTLQASHTSSMHNEYWSIHLQPDSINSPWQPHNRIVEQAELTSA
Specific function: Unknown
COG id: COG3207
COG function: function code Q; Pyoverdine/dityrosine biosynthesis protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Saccharomyces cerevisiae, GI6320611, Length=313, Percent_Identity=24.2811501597444, Blast_Score=94, Evalue=8e-20,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 70460; Mature: 70460
Theoretical pI: Translated: 6.62; Mature: 6.62
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.8 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 3.8 %Cys+Met (Translated Protein) 1.8 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 3.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLDAQQETYVEKISFILLNQLIAQCNASYNGLAHLKSQIRRFVNSQEKIKLLLPAFPCKT CCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCEEEEEEECCCCCC NNLDKVLSHTPDLGEYVVLRKFVQCIRDIESVYEPGVTFYIFSDYHTFSDYISVDLDHHY CCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCEEEECCCCC DYSDNLRKMVANMNCSDALKIVNFEHFDEFSDLKDTEYFDGLREKFGDPDYAENFTELKL CHHHHHHHHHHCCCHHHHHEECCHHHHHHHHCCCCCHHHHHHHHHCCCCCHHCCCEEEEE KNNKMNQTYLGLKKFMNQDQKFVLAPLSYKDRRRRLADIAKGMMVQGKALDNFLQQKFAD CCCCCCHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHCCEEECHHHHHHHHHHHHH CIRLSIHEHPMIGKKYSLFLFHERQFKTPWHSTLLFDASRGEFIIDSKENHLKRSGVILP HHHHHHCCCCCCCCEEEEEEEECCCCCCCCCCEEEEECCCCCEEEECCHHHHHHCCEEEE VTHDGKPWCYLQLSAADEVHAHALRQIRAELQHEKSGLYLECPANRASLDMLLPKELSQL EECCCCCEEEEEECCCHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHCCHHHHHHH VKEFGSVLLRGFAPLADAEQLQTWYLNHRSAVTWAYEVSVQAFKGSAGEQPLHWELSCPP HHHHHHHHHHHCCCCCCHHHHHHHHHCCCCEEEEEEEEEEEEECCCCCCCCEEEEECCCC AYMAVHPHRYQYEDYTPHEYAVYSVASPDSNTWTVVDAALAVLTINGQEREQLRNTIMHY CEEEECCCCCCCCCCCCCCEEEEEEECCCCCCEEHHEEEEEEEEECCHHHHHHHHHHHHH SNFSPEHGGNTLHPLVRYCSTSRQDVLRWQDFQHAQGYLTHLEGVSELTEQSRVYQRLNT CCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LCHDPRVCFEYRLQTGDLLLVNNLTTLQASHTSSMHNEYWSIHLQPDSINSPWQPHNRIV HHCCCCEEEHEEECCCCEEEEECCEEEECHHHHHHCCCEEEEEEECCCCCCCCCHHHHHH EQAELTSA HHHHHCCC >Mature Secondary Structure MLDAQQETYVEKISFILLNQLIAQCNASYNGLAHLKSQIRRFVNSQEKIKLLLPAFPCKT CCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCEEEEEEECCCCCC NNLDKVLSHTPDLGEYVVLRKFVQCIRDIESVYEPGVTFYIFSDYHTFSDYISVDLDHHY CCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCEEEECCCCC DYSDNLRKMVANMNCSDALKIVNFEHFDEFSDLKDTEYFDGLREKFGDPDYAENFTELKL CHHHHHHHHHHCCCHHHHHEECCHHHHHHHHCCCCCHHHHHHHHHCCCCCHHCCCEEEEE KNNKMNQTYLGLKKFMNQDQKFVLAPLSYKDRRRRLADIAKGMMVQGKALDNFLQQKFAD CCCCCCHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHCCEEECHHHHHHHHHHHHH CIRLSIHEHPMIGKKYSLFLFHERQFKTPWHSTLLFDASRGEFIIDSKENHLKRSGVILP HHHHHHCCCCCCCCEEEEEEEECCCCCCCCCCEEEEECCCCCEEEECCHHHHHHCCEEEE VTHDGKPWCYLQLSAADEVHAHALRQIRAELQHEKSGLYLECPANRASLDMLLPKELSQL EECCCCCEEEEEECCCHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHCCHHHHHHH VKEFGSVLLRGFAPLADAEQLQTWYLNHRSAVTWAYEVSVQAFKGSAGEQPLHWELSCPP HHHHHHHHHHHCCCCCCHHHHHHHHHCCCCEEEEEEEEEEEEECCCCCCCCEEEEECCCC AYMAVHPHRYQYEDYTPHEYAVYSVASPDSNTWTVVDAALAVLTINGQEREQLRNTIMHY CEEEECCCCCCCCCCCCCCEEEEEEECCCCCCEEHHEEEEEEEEECCHHHHHHHHHHHHH SNFSPEHGGNTLHPLVRYCSTSRQDVLRWQDFQHAQGYLTHLEGVSELTEQSRVYQRLNT CCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LCHDPRVCFEYRLQTGDLLLVNNLTTLQASHTSSMHNEYWSIHLQPDSINSPWQPHNRIV HHCCCCEEEHEEECCCCEEEEECCEEEECHHHHHHCCCEEEEEEECCCCCCCCCHHHHHH EQAELTSA HHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA