Click here to switch to the map view.

The map label for this gene is ygiQ [C]

Identifier: 227081860

GI number: 227081860

Start: 1792679

End: 1795048

Strand: Direct

Name: ygiQ [C]

Synonym: VCM66_1651

Alternate gene names: 227081860

Gene position: 1792679-1795048 (Clockwise)

Preceding gene: 227081858

Following gene: 227081862

Centisome position: 61.98

GC content: 50.8

Gene sequence:

>2370_bases
ATGCACAGCGAAGTTACCCCTATCCACCACTACAAAAAATACTGGGCCGAGTGTTTCGGCACAGCGCCATTCTTACCGAC
CAGTCGTGAAGAAATGGATCAATTAGGCTGGGATAGCTGTGATGTGATTATCGTGACCGGCGATGCTTATGTTGATCACC
CAAGCTTTGGTATGGCAATCATCGGCCGCTTACTTGAAGCACAAGGTTTCCGAGTTGGGATCATTGCGCAGCCAGAATGG
CAAACTAAAGACGCCTTTATGACGCTTGGCAAACCGAACCTGTTTTTCGGTGTAACCGCCGGTAACATGGACTCAATGAT
CAACCGCTACACGGCGGATAAAAAAATTCGTCACGACGATGCGTACACCCCAAACAATAAAGGCGGCATGCGTCCTGATC
GCTGTTCATTGGTTTACTCACAACGTTGTCGTGAAGCCTACAAAGATGTGCCGATTGTGCTTGGTGGTATTGAAGCCAGC
CTGCGTCGTGTCGCGCATTACGATTACTGGTCAGACAAAGTTCGCCGCTCTATCCTGCTGGATGCCAAAGCCGATATTTT
GCTATTCGGTAACGCCGAGCGCGCACTGGTTGAAGTAGCTCACCGTTTAGCCAATGGCGAATCAATTAATAAGATGGTTG
ATATTCGCGGTACGGCTGTCAATTTGGCTCAAGTACCTGAACATTTTAAGATTATCGATTCCACCCGCATTGATCAGCCA
AACAAACCGTTTGTGCCAAGCAATCCGTATGAAGTGGAAACCCAGTGCGCGACCAAAGGTGATGAGAAAGAAGAAGCTCA
ACCTATCACCATTCGCCCATCACGCCATGATGCGAAAACCACCGCGGTGCGTCTGCCTTCATTTGAAAAGCTGGTTAATG
ACCGTATTTTGTACGCGCACGCCAGCCGTGTGTTGCATTTAGAAACCAACCCTTATTCAGGCCGTGCGCTGGTGCAGCGT
CATGGTGACCGTGAACTGTGGGTTAACCAAGCACCGATCCCGCTCACGACTGAAGAGATGGATTTCGTGTTTGGCCTTTA
CTACGCCCGTGTACCGCACCCTAAATATGGCGATGCGAAAATTCCGGCGTATGACATGATCAAAACCTCGGTCAACATCA
TGCGTGGCTGTTTTGGTGGCTGTTCATTCTGTTCTATCACTGAGCACGAAGGACGCATCATCCAGAACCGTTCACAAGAG
TCGATCATCAATGAACTGAAAGAAATCCGTGACAAAGTGCCGGGCTTCACCGGTGTGATTTCGGACTTGGGTGGCCCGAC
AGCGAACATGTACCGCCTCGGCTGTTCAGATCCGAAAGCGGAAGCGAACTGTCGTCGCCCAAGCTGTGTGTTCCCGGGTA
TCTGTCATAAGCTGAATACCGACCATAAACACACTATCGATCTGTATCGTGCAGCGCGTGATGTGGATGGCATTAAGAAA
GTAGTGATCGCTTCTGGCGTACGTTACGACTTGGCGATTGAATCACCTGAGTACGTGCGTGAACTGGTGACCCACCACGT
CGGCGGCTATTTGAAGATTGCTCCTGAGCATACGGAAAAAGGCCCACTGAGCATGATGATGAAACCAGGCATGGGTACTT
ATGATCGCTTTAAAGAGTTGTTTGAAAAATACAGCGCTGAAGCGGGCAAAAAACAGTATCTGATCCCTTACTTCATTGCC
GCTCACCCGGGGACTGAAGATGAAGACATGGTCAACCTCGCGCTGTGGCTAAAATCCAACAACTACCGTTGTGACCAAGT
ACAGAACTTCTACCCATCGCCAATGTGTAATGCTACTGCGATGTATCACGCAGAAGTGAACCCGCTGAAACGCGTGAAAT
ACAAGAAACCGGAAAAGGTGCCAGTGGCGAAAGGTGAAGCTCAACGTCGCTTGCATAAAGCCCTGCTGCGCTACCATGAT
CCTGCCAACTGGCCGATGATTCGTGAAGCACTGATTGCGATGGGCAAACGTCATCTGATTGGTGATCGCCCTGAGTGTCT
GATCCCAGAAAAAGATTCAGACCTAGTCACCCCAGCACAAAGCCGCAAATCAGGTCGTCATGGCGCGAATCGTTTTGCGA
CCAAGCATACGCATAGCCAACCGGGCTTTGATGCGCTGCGTGGTAACAAATCTGGCGGGCAAGGTCGTCCGAACAGCGGT
AATAAATCCAATCAGGGCAAACCTGCCGGCAGTAAACCGACAGGCAGTAAGCCAACGGCGAACAAGCCTGCGGGCAACCA
ATCTGCTCGCAGTGAACAAAACCGAGGCCAACAAGGTCAACGGGGTTCAGCGACAGGCGGTAAACCACAAGGCTCTGGTC
GTCCTGCCAGCCGTGGTAATACTCAACGTCAGCCGCAACGCGCACGTTAA

Upstream 100 bases:

>100_bases
AAGAGTGAAATAATCCCTTAACAAAATCGGGGCAATGTTACGGTAGATACTGGCCTTGCAAGCCGCTATAATGCCGCCCT
CTTAATCTTGAGGCCAAAAT

Downstream 100 bases:

>100_bases
ATCTATACCTATTTCAGCCTCCCATTTGGGAGGCTGAATGTTTTACCTCAAAGCATCGGTACCACCGAAAGCAGTAACAA
TCCTCCCATCGCCCCATTAA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 789; Mature: 789

Protein sequence:

>789_residues
MHSEVTPIHHYKKYWAECFGTAPFLPTSREEMDQLGWDSCDVIIVTGDAYVDHPSFGMAIIGRLLEAQGFRVGIIAQPEW
QTKDAFMTLGKPNLFFGVTAGNMDSMINRYTADKKIRHDDAYTPNNKGGMRPDRCSLVYSQRCREAYKDVPIVLGGIEAS
LRRVAHYDYWSDKVRRSILLDAKADILLFGNAERALVEVAHRLANGESINKMVDIRGTAVNLAQVPEHFKIIDSTRIDQP
NKPFVPSNPYEVETQCATKGDEKEEAQPITIRPSRHDAKTTAVRLPSFEKLVNDRILYAHASRVLHLETNPYSGRALVQR
HGDRELWVNQAPIPLTTEEMDFVFGLYYARVPHPKYGDAKIPAYDMIKTSVNIMRGCFGGCSFCSITEHEGRIIQNRSQE
SIINELKEIRDKVPGFTGVISDLGGPTANMYRLGCSDPKAEANCRRPSCVFPGICHKLNTDHKHTIDLYRAARDVDGIKK
VVIASGVRYDLAIESPEYVRELVTHHVGGYLKIAPEHTEKGPLSMMMKPGMGTYDRFKELFEKYSAEAGKKQYLIPYFIA
AHPGTEDEDMVNLALWLKSNNYRCDQVQNFYPSPMCNATAMYHAEVNPLKRVKYKKPEKVPVAKGEAQRRLHKALLRYHD
PANWPMIREALIAMGKRHLIGDRPECLIPEKDSDLVTPAQSRKSGRHGANRFATKHTHSQPGFDALRGNKSGGQGRPNSG
NKSNQGKPAGSKPTGSKPTANKPAGNQSARSEQNRGQQGQRGSATGGKPQGSGRPASRGNTQRQPQRAR

Sequences:

>Translated_789_residues
MHSEVTPIHHYKKYWAECFGTAPFLPTSREEMDQLGWDSCDVIIVTGDAYVDHPSFGMAIIGRLLEAQGFRVGIIAQPEW
QTKDAFMTLGKPNLFFGVTAGNMDSMINRYTADKKIRHDDAYTPNNKGGMRPDRCSLVYSQRCREAYKDVPIVLGGIEAS
LRRVAHYDYWSDKVRRSILLDAKADILLFGNAERALVEVAHRLANGESINKMVDIRGTAVNLAQVPEHFKIIDSTRIDQP
NKPFVPSNPYEVETQCATKGDEKEEAQPITIRPSRHDAKTTAVRLPSFEKLVNDRILYAHASRVLHLETNPYSGRALVQR
HGDRELWVNQAPIPLTTEEMDFVFGLYYARVPHPKYGDAKIPAYDMIKTSVNIMRGCFGGCSFCSITEHEGRIIQNRSQE
SIINELKEIRDKVPGFTGVISDLGGPTANMYRLGCSDPKAEANCRRPSCVFPGICHKLNTDHKHTIDLYRAARDVDGIKK
VVIASGVRYDLAIESPEYVRELVTHHVGGYLKIAPEHTEKGPLSMMMKPGMGTYDRFKELFEKYSAEAGKKQYLIPYFIA
AHPGTEDEDMVNLALWLKSNNYRCDQVQNFYPSPMCNATAMYHAEVNPLKRVKYKKPEKVPVAKGEAQRRLHKALLRYHD
PANWPMIREALIAMGKRHLIGDRPECLIPEKDSDLVTPAQSRKSGRHGANRFATKHTHSQPGFDALRGNKSGGQGRPNSG
NKSNQGKPAGSKPTGSKPTANKPAGNQSARSEQNRGQQGQRGSATGGKPQGSGRPASRGNTQRQPQRAR
>Mature_789_residues
MHSEVTPIHHYKKYWAECFGTAPFLPTSREEMDQLGWDSCDVIIVTGDAYVDHPSFGMAIIGRLLEAQGFRVGIIAQPEW
QTKDAFMTLGKPNLFFGVTAGNMDSMINRYTADKKIRHDDAYTPNNKGGMRPDRCSLVYSQRCREAYKDVPIVLGGIEAS
LRRVAHYDYWSDKVRRSILLDAKADILLFGNAERALVEVAHRLANGESINKMVDIRGTAVNLAQVPEHFKIIDSTRIDQP
NKPFVPSNPYEVETQCATKGDEKEEAQPITIRPSRHDAKTTAVRLPSFEKLVNDRILYAHASRVLHLETNPYSGRALVQR
HGDRELWVNQAPIPLTTEEMDFVFGLYYARVPHPKYGDAKIPAYDMIKTSVNIMRGCFGGCSFCSITEHEGRIIQNRSQE
SIINELKEIRDKVPGFTGVISDLGGPTANMYRLGCSDPKAEANCRRPSCVFPGICHKLNTDHKHTIDLYRAARDVDGIKK
VVIASGVRYDLAIESPEYVRELVTHHVGGYLKIAPEHTEKGPLSMMMKPGMGTYDRFKELFEKYSAEAGKKQYLIPYFIA
AHPGTEDEDMVNLALWLKSNNYRCDQVQNFYPSPMCNATAMYHAEVNPLKRVKYKKPEKVPVAKGEAQRRLHKALLRYHD
PANWPMIREALIAMGKRHLIGDRPECLIPEKDSDLVTPAQSRKSGRHGANRFATKHTHSQPGFDALRGNKSGGQGRPNSG
NKSNQGKPAGSKPTGSKPTANKPAGNQSARSEQNRGQQGQRGSATGGKPQGSGRPASRGNTQRQPQRAR

Specific function: Unknown

COG id: COG1032

COG function: function code C; Fe-S oxidoreductase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0313 family

Homologues:

Organism=Escherichia coli, GI48994917, Length=724, Percent_Identity=65.7458563535912, Blast_Score=991, Evalue=0.0,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y1711_VIBCH (Q9KRD1)

Other databases:

- EMBL:   AE003852
- PIR:   A82166
- RefSeq:   NP_231347.1
- ProteinModelPortal:   Q9KRD1
- GeneID:   2613716
- GenomeReviews:   AE003852_GR
- KEGG:   vch:VC1711
- TIGR:   VC_1711
- HOGENOM:   HBG500854
- OMA:   FLPMSRA
- ProtClustDB:   PRK01254
- HAMAP:   MF_01251
- InterPro:   IPR006638
- InterPro:   IPR020612
- InterPro:   IPR007197
- InterPro:   IPR013704
- InterPro:   IPR022946
- SMART:   SM00729

Pfam domain/function: PF04055 Radical_SAM; PF08497 Radical_SAM_N

EC number: NA

Molecular weight: Translated: 88215; Mature: 88215

Theoretical pI: Translated: 9.54; Mature: 9.54

Prosite motif: PS01278 UPF0004

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHSEVTPIHHYKKYWAECFGTAPFLPTSREEMDQLGWDSCDVIIVTGDAYVDHPSFGMAI
CCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHCCCCCCCEEEEECCCEECCCCHHHHH
IGRLLEAQGFRVGIIAQPEWQTKDAFMTLGKPNLFFGVTAGNMDSMINRYTADKKIRHDD
HHHHHHCCCCEEEEEECCCCCCCCCEEECCCCCEEEEEECCCHHHHHHHHHHCCCCCCCC
AYTPNNKGGMRPDRCSLVYSQRCREAYKDVPIVLGGIEASLRRVAHYDYWSDKVRRSILL
CCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEECHHHHHHHHHHCCHHHHHHHHHHEE
DAKADILLFGNAERALVEVAHRLANGESINKMVDIRGTAVNLAQVPEHFKIIDSTRIDQP
ECCCCEEEECCCHHHHHHHHHHHHCCCHHHHEEECCCCEEEHHHCCHHHEEHHHCCCCCC
NKPFVPSNPYEVETQCATKGDEKEEAQPITIRPSRHDAKTTAVRLPSFEKLVNDRILYAH
CCCCCCCCCCEEEEHHCCCCCCHHCCCCEEECCCCCCCCHHEEECCCHHHHHCCCEEEEE
ASRVLHLETNPYSGRALVQRHGDRELWVNQAPIPLTTEEMDFVFGLYYARVPHPKYGDAK
CCEEEEEECCCCCCHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCC
IPAYDMIKTSVNIMRGCFGGCSFCSITEHEGRIIQNRSQESIINELKEIRDKVPGFTGVI
CCHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHCCCHHHHHHHHHHHHHHCCCHHHHH
SDLGGPTANMYRLGCSDPKAEANCRRPSCVFPGICHKLNTDHKHTIDLYRAARDVDGIKK
HHCCCCCCCEEEECCCCCCCCCCCCCCCCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHH
VVIASGVRYDLAIESPEYVRELVTHHVGGYLKIAPEHTEKGPLSMMMKPGMGTYDRFKEL
HHHHCCCEEEEEECCHHHHHHHHHHHCCCEEEECCCCCCCCCCEEEECCCCCHHHHHHHH
FEKYSAEAGKKQYLIPYFIAAHPGTEDEDMVNLALWLKSNNYRCDQVQNFYPSPMCNATA
HHHHHHCCCCCCEEEEEEEEECCCCCCHHEEEEEEEEECCCCCHHHHHCCCCCCCCCCEE
MYHAEVNPLKRVKYKKPEKVPVAKGEAQRRLHKALLRYHDPANWPMIREALIAMGKRHLI
EEEECCCHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCHHHC
GDRPECLIPEKDSDLVTPAQSRKSGRHGANRFATKHTHSQPGFDALRGNKSGGQGRPNSG
CCCCCEECCCCCCCCCCCHHHHCCCCCCHHHHHHCCCCCCCCHHHHCCCCCCCCCCCCCC
NKSNQGKPAGSKPTGSKPTANKPAGNQSARSEQNRGQQGQRGSATGGKPQGSGRPASRGN
CCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCC
TQRQPQRAR
CCCCCCCCC
>Mature Secondary Structure
MHSEVTPIHHYKKYWAECFGTAPFLPTSREEMDQLGWDSCDVIIVTGDAYVDHPSFGMAI
CCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHCCCCCCCEEEEECCCEECCCCHHHHH
IGRLLEAQGFRVGIIAQPEWQTKDAFMTLGKPNLFFGVTAGNMDSMINRYTADKKIRHDD
HHHHHHCCCCEEEEEECCCCCCCCCEEECCCCCEEEEEECCCHHHHHHHHHHCCCCCCCC
AYTPNNKGGMRPDRCSLVYSQRCREAYKDVPIVLGGIEASLRRVAHYDYWSDKVRRSILL
CCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEECHHHHHHHHHHCCHHHHHHHHHHEE
DAKADILLFGNAERALVEVAHRLANGESINKMVDIRGTAVNLAQVPEHFKIIDSTRIDQP
ECCCCEEEECCCHHHHHHHHHHHHCCCHHHHEEECCCCEEEHHHCCHHHEEHHHCCCCCC
NKPFVPSNPYEVETQCATKGDEKEEAQPITIRPSRHDAKTTAVRLPSFEKLVNDRILYAH
CCCCCCCCCCEEEEHHCCCCCCHHCCCCEEECCCCCCCCHHEEECCCHHHHHCCCEEEEE
ASRVLHLETNPYSGRALVQRHGDRELWVNQAPIPLTTEEMDFVFGLYYARVPHPKYGDAK
CCEEEEEECCCCCCHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCC
IPAYDMIKTSVNIMRGCFGGCSFCSITEHEGRIIQNRSQESIINELKEIRDKVPGFTGVI
CCHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHCCCHHHHHHHHHHHHHHCCCHHHHH
SDLGGPTANMYRLGCSDPKAEANCRRPSCVFPGICHKLNTDHKHTIDLYRAARDVDGIKK
HHCCCCCCCEEEECCCCCCCCCCCCCCCCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHH
VVIASGVRYDLAIESPEYVRELVTHHVGGYLKIAPEHTEKGPLSMMMKPGMGTYDRFKEL
HHHHCCCEEEEEECCHHHHHHHHHHHCCCEEEECCCCCCCCCCEEEECCCCCHHHHHHHH
FEKYSAEAGKKQYLIPYFIAAHPGTEDEDMVNLALWLKSNNYRCDQVQNFYPSPMCNATA
HHHHHHCCCCCCEEEEEEEEECCCCCCHHEEEEEEEEECCCCCHHHHHCCCCCCCCCCEE
MYHAEVNPLKRVKYKKPEKVPVAKGEAQRRLHKALLRYHDPANWPMIREALIAMGKRHLI
EEEECCCHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCHHHC
GDRPECLIPEKDSDLVTPAQSRKSGRHGANRFATKHTHSQPGFDALRGNKSGGQGRPNSG
CCCCCEECCCCCCCCCCCHHHHCCCCCCHHHHHHCCCCCCCCHHHHCCCCCCCCCCCCCC
NKSNQGKPAGSKPTGSKPTANKPAGNQSARSEQNRGQQGQRGSATGGKPQGSGRPASRGN
CCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCC
TQRQPQRAR
CCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 10952301