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The map label for this gene is nlpC [H]

Identifier: 227081692

GI number: 227081692

Start: 1597287

End: 1597787

Strand: Direct

Name: nlpC [H]

Synonym: VCM66_1478

Alternate gene names: 227081692

Gene position: 1597287-1597787 (Clockwise)

Preceding gene: 227081690

Following gene: 227081694

Centisome position: 55.22

GC content: 46.11

Gene sequence:

>501_bases
ATGTTGACGGTCAAGCAAACGTTTTCTCTGCTTATTCTAGGATTCCTTGTCGGGTGTACAGCCACTCCGCCTTCCGAGCC
TGATACTTCTGTATCCGAACCGAATTCGAGTAACCTACCATTGGCGAACTTTTCGAGTGTATTCACAGAGTGGCGCGGCG
TACCCTATCGTTTAGGCGGGAATAGCAAAAACGGCATTGATTGTTCAGCTTTTGTACAAATTGCTTACCGCGACGCATGG
CAACGAGATTTACCGCGCACCACACAGTCTCAAGCGCAAACGGGTCAGAAAATCGCATATGAACATGCTCAATATGGGGA
TCTGGTATTTTTTAAGACATCCCGCACCAATATTCACGTCGGTGTCTATTTAGGGGATAAGCAGTTTATGCACGCTTCAA
CGTCGAAAGGCGTGATCATTTCGAGAATGGATAACCCTTACTGGGCTTCAAAATTTTGGCATTTTAGGCGGATTGAGAAT
CCGCCTTTGTTGTCAAACTAA

Upstream 100 bases:

>100_bases
TGTCAAAGCCATGTAAATGCGTCTTAGGTTTGAGAGTCGACGCCATGGTAGGTAGTGGCTGTTTCAGTTTTATTTCATTT
TTTTGTCAATAAGGTGACTC

Downstream 100 bases:

>100_bases
TGAATGGGGTTAGTCGTATTTCGCAACGGCTGAGTCAAACAAGTTTTTCACTAGGGCGATGTATTCATCCAAAAAGGCGA
TCTGCTCATTAGTCGCGGGG

Product: lipoprotein NlpC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 166; Mature: 166

Protein sequence:

>166_residues
MLTVKQTFSLLILGFLVGCTATPPSEPDTSVSEPNSSNLPLANFSSVFTEWRGVPYRLGGNSKNGIDCSAFVQIAYRDAW
QRDLPRTTQSQAQTGQKIAYEHAQYGDLVFFKTSRTNIHVGVYLGDKQFMHASTSKGVIISRMDNPYWASKFWHFRRIEN
PPLLSN

Sequences:

>Translated_166_residues
MLTVKQTFSLLILGFLVGCTATPPSEPDTSVSEPNSSNLPLANFSSVFTEWRGVPYRLGGNSKNGIDCSAFVQIAYRDAW
QRDLPRTTQSQAQTGQKIAYEHAQYGDLVFFKTSRTNIHVGVYLGDKQFMHASTSKGVIISRMDNPYWASKFWHFRRIEN
PPLLSN
>Mature_166_residues
MLTVKQTFSLLILGFLVGCTATPPSEPDTSVSEPNSSNLPLANFSSVFTEWRGVPYRLGGNSKNGIDCSAFVQIAYRDAW
QRDLPRTTQSQAQTGQKIAYEHAQYGDLVFFKTSRTNIHVGVYLGDKQFMHASTSKGVIISRMDNPYWASKFWHFRRIEN
PPLLSN

Specific function: Unknown

COG id: COG0791

COG function: function code M; Cell wall-associated hydrolases (invasion-associated proteins)

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nlpC/p60 family [H]

Homologues:

Organism=Escherichia coli, GI1788501, Length=111, Percent_Identity=47.7477477477478, Blast_Score=128, Evalue=2e-31,
Organism=Escherichia coli, GI1788001, Length=143, Percent_Identity=42.6573426573427, Blast_Score=121, Evalue=3e-29,
Organism=Escherichia coli, GI1787944, Length=118, Percent_Identity=35.5932203389831, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI1786421, Length=112, Percent_Identity=37.5, Blast_Score=67, Evalue=7e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000064 [H]

Pfam domain/function: PF00877 NLPC_P60 [H]

EC number: NA

Molecular weight: Translated: 18667; Mature: 18667

Theoretical pI: Translated: 9.43; Mature: 9.43

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLTVKQTFSLLILGFLVGCTATPPSEPDTSVSEPNSSNLPLANFSSVFTEWRGVPYRLGG
CCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEECC
NSKNGIDCSAFVQIAYRDAWQRDLPRTTQSQAQTGQKIAYEHAQYGDLVFFKTSRTNIHV
CCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHCCHHHHHHCCCCCCEEEEEECCCEEEE
GVYLGDKQFMHASTSKGVIISRMDNPYWASKFWHFRRIENPPLLSN
EEEECCCCEEECCCCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure
MLTVKQTFSLLILGFLVGCTATPPSEPDTSVSEPNSSNLPLANFSSVFTEWRGVPYRLGG
CCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEECC
NSKNGIDCSAFVQIAYRDAWQRDLPRTTQSQAQTGQKIAYEHAQYGDLVFFKTSRTNIHV
CCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHCCHHHHHHCCCCCCEEEEEECCCEEEE
GVYLGDKQFMHASTSKGVIISRMDNPYWASKFWHFRRIENPPLLSN
EEEECCCCEEECCCCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]