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The map label for this gene is 227081690

Identifier: 227081690

GI number: 227081690

Start: 1594261

End: 1595175

Strand: Direct

Name: 227081690

Synonym: VCM66_1476

Alternate gene names: NA

Gene position: 1594261-1595175 (Clockwise)

Preceding gene: 227081687

Following gene: 227081692

Centisome position: 55.12

GC content: 48.42

Gene sequence:

>915_bases
GTGATGAAACGCGTGAATTCTCATGGCTCGGACTACTGGCGGAAAAATGGCTGCGATTTTACTGACCACAGGGCTTTTGC
GCCAGTAAAGATTCTCGACGTGGCCCAAATCAAGGAGAACCCAATGAGTGAACAAATTGAGCTGATCCGCTTAGCGATTT
TTTTCTCTGTATTAGTGATTTGTGCCTTGTGGGAATCGAATCGTCCACGCAAAACCTTGTCGCAAAGCAAGCGGGTTCGC
TGGCTGAATAACCTCGGATTGGTTGGCTTTAATAGTCTTTTGATCACCGCGCTGATGCCAATTTTAGCCTTCAGTGCCGC
GCAATGGGCGCAAAGCCAACAGTTTGGCTTGCTGTATTGGTTGGAGATCCCACCTTTCATCGCGCTCTTCGTTGCGGTGG
TATTACTGGATGCGGTGATTTATTGGCAGCACCTGTTGTTTCACCGTATTCCTTTGTTGTGGCGGCTACACCGCATGCAC
CATGCAGATCAAGATATTGATGTCACCACTGGCAGTCGCTTTCATCCGCTCGAAATAATGATTTCTGCGTGGATAAAAAT
CGGCGCAGTGACGTTATTGGGTGCATCTCCGTTGGCCGTCGTGGTGTTTGAAATTTTGCTCAATGCCAGCGCGATGTTTA
ATCACAGCAATGCTAAGCTGCCCTATAAAATCGACCAGTGGCTGCGTTTACTGGTTGTAACACCGGACATGCACCGAGTC
CACCACTCCGTTTTAGTTCACGAGACCCACTCCAACTTCGGCTTTTTTCTTTCGATATGGGACAAGATGTTTCACACCTA
TATTGCGCAGCCAGAAATGGGCCATGAGCGAATGAAGATTGGCTTGCCACTGTTTCGTCAAGCACGAGAACAGTGGCTGG
ATAAAATGCTGACTCAACCGTTTCGCGAACGTTAA

Upstream 100 bases:

>100_bases
AGCAGTGCGTCAACTCAACCAGACAGTACAAGCAGCGTTTAATCTTGCCACCCCGCGCTAAAAATGGCTTGGTTGAACGT
TCTAGGCGATATTGATATAA

Downstream 100 bases:

>100_bases
ATCAGTTCAACTCATACTTATGCAACATCGCTTGTTGATGACCAGCAATCTCTGCGACTTGTTCCGCGCTTTCCAACATG
GCATCCAACTGACGTTTGGT

Product: hypothetical protein

Products: NA

Alternate protein names: Sterol Desaturase; Sterol Desaturase-Related Protein; Sterol Desaturase-Like Protein; C-5 Sterol Desaturase; Transmembrane Protein; Sterol Desaturase -Like Protein; TRAP Dicarboxylate Transporter; Fatty Acid Hydroxylase Superfamily; Sterol Desaturase Family Protein; Sterol Desaturate; TRAP Dicarboxylate Transporter DctM Subunit; Fatty Acid Hydroxylase Superfamily Protein; Sterol Desaturase Transmembrane Protein

Number of amino acids: Translated: 304; Mature: 304

Protein sequence:

>304_residues
MMKRVNSHGSDYWRKNGCDFTDHRAFAPVKILDVAQIKENPMSEQIELIRLAIFFSVLVICALWESNRPRKTLSQSKRVR
WLNNLGLVGFNSLLITALMPILAFSAAQWAQSQQFGLLYWLEIPPFIALFVAVVLLDAVIYWQHLLFHRIPLLWRLHRMH
HADQDIDVTTGSRFHPLEIMISAWIKIGAVTLLGASPLAVVVFEILLNASAMFNHSNAKLPYKIDQWLRLLVVTPDMHRV
HHSVLVHETHSNFGFFLSIWDKMFHTYIAQPEMGHERMKIGLPLFRQAREQWLDKMLTQPFRER

Sequences:

>Translated_304_residues
MMKRVNSHGSDYWRKNGCDFTDHRAFAPVKILDVAQIKENPMSEQIELIRLAIFFSVLVICALWESNRPRKTLSQSKRVR
WLNNLGLVGFNSLLITALMPILAFSAAQWAQSQQFGLLYWLEIPPFIALFVAVVLLDAVIYWQHLLFHRIPLLWRLHRMH
HADQDIDVTTGSRFHPLEIMISAWIKIGAVTLLGASPLAVVVFEILLNASAMFNHSNAKLPYKIDQWLRLLVVTPDMHRV
HHSVLVHETHSNFGFFLSIWDKMFHTYIAQPEMGHERMKIGLPLFRQAREQWLDKMLTQPFRER
>Mature_304_residues
MMKRVNSHGSDYWRKNGCDFTDHRAFAPVKILDVAQIKENPMSEQIELIRLAIFFSVLVICALWESNRPRKTLSQSKRVR
WLNNLGLVGFNSLLITALMPILAFSAAQWAQSQQFGLLYWLEIPPFIALFVAVVLLDAVIYWQHLLFHRIPLLWRLHRMH
HADQDIDVTTGSRFHPLEIMISAWIKIGAVTLLGASPLAVVVFEILLNASAMFNHSNAKLPYKIDQWLRLLVVTPDMHRV
HHSVLVHETHSNFGFFLSIWDKMFHTYIAQPEMGHERMKIGLPLFRQAREQWLDKMLTQPFRER

Specific function: Unknown

COG id: COG3000

COG function: function code I; Sterol desaturase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 35437; Mature: 35437

Theoretical pI: Translated: 10.03; Mature: 10.03

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMKRVNSHGSDYWRKNGCDFTDHRAFAPVKILDVAQIKENPMSEQIELIRLAIFFSVLVI
CCCCCCCCCCHHHHCCCCCCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
CALWESNRPRKTLSQSKRVRWLNNLGLVGFNSLLITALMPILAFSAAQWAQSQQFGLLYW
HHHHCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEE
LEIPPFIALFVAVVLLDAVIYWQHLLFHRIPLLWRLHRMHHADQDIDVTTGSRFHPLEIM
ECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEECCCCCCCHHHHH
ISAWIKIGAVTLLGASPLAVVVFEILLNASAMFNHSNAKLPYKIDQWLRLLVVTPDMHRV
HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCHHHH
HHSVLVHETHSNFGFFLSIWDKMFHTYIAQPEMGHERMKIGLPLFRQAREQWLDKMLTQP
HHHHHEEECCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHCCHHHHHHHHHHHHHHHHHH
FRER
HHCC
>Mature Secondary Structure
MMKRVNSHGSDYWRKNGCDFTDHRAFAPVKILDVAQIKENPMSEQIELIRLAIFFSVLVI
CCCCCCCCCCHHHHCCCCCCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
CALWESNRPRKTLSQSKRVRWLNNLGLVGFNSLLITALMPILAFSAAQWAQSQQFGLLYW
HHHHCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEE
LEIPPFIALFVAVVLLDAVIYWQHLLFHRIPLLWRLHRMHHADQDIDVTTGSRFHPLEIM
ECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEECCCCCCCHHHHH
ISAWIKIGAVTLLGASPLAVVVFEILLNASAMFNHSNAKLPYKIDQWLRLLVVTPDMHRV
HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCHHHH
HHSVLVHETHSNFGFFLSIWDKMFHTYIAQPEMGHERMKIGLPLFRQAREQWLDKMLTQP
HHHHHEEECCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHCCHHHHHHHHHHHHHHHHHH
FRER
HHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA