Click here to switch to the map view.

The map label for this gene is aapJ [H]

Identifier: 227081533

GI number: 227081533

Start: 1408599

End: 1409627

Strand: Reverse

Name: aapJ [H]

Synonym: VCM66_1317

Alternate gene names: 227081533

Gene position: 1409627-1408599 (Counterclockwise)

Preceding gene: 227081535

Following gene: 227081532

Centisome position: 48.73

GC content: 47.81

Gene sequence:

>1029_bases
ATGGCGAATAAACTCACTGTTCTTGCTTCTGTCGTCGCAGCCTCGTCTGCCATGCTGAGCCTCTCGGCATCAGCCGCAGA
AAGCACTCTAGACAAAGTGTTATCTCAAGGTTTTATTACTTGTGGCGTCAGTACAGGCTTACCGGGTTTTTCTAACCCAA
ATGCAAAAGGGGAATGGGAAGGGATCGACGTTGAATATTGCCAAGCAATGGCAGCAGCGGTTCTAGGCGATAAAACCAAA
GTTAAATTTGTACCACTCACCGCAAAAGAGCGTTTCACTGCGCTGCAATCCGGTGAAATTGATGTTCTGTCTCGTAACAC
AACATGGACTCTGCAACGTGATAGCGCCCTGGGTCTTAACTTTGTCGGGGTGAACTACTACGACGGCCAAGGTTTCATGG
TGAAAAAAGATTTGGGTGTGAAAAGCGCCAAAGAACTGAATGGCGCGTCAGTCTGTGTTCAATCGGGCACCACAACAGAA
CTCAACTTGGCAGACTACTTCCGCAATAGCGGTATGACTTACAAACCTGTGGTATTTGATACTGCAGCTCAAACTTCAAA
AGGCTTTGATGCTGGTCGTTGTGATGTTCTGACGACTGACCAATCAGGTCTGTATGCACTGCGCCTCAATTTAGAAAAAC
CAGACTCTGCGGTCGTTCTACCTGAAATCATCTCTAAAGAGCCTCTAGGTCCTGTGGTTCGTCAGGATGATGATAAGTGG
TTCAACGTCGCTAAATGGGTACTGTACGCCATGGTCAATGCTGAAGAGTACGGTATCACATCGAAAAACGTCGATGAGAT
GATGAAGTCAGACAACCCAGAAGTAAAACGTATCCTTGGTCTTGATGGTCCGAAAGGAACGGGTCTTGGCATTCGTGATG
ACTGGAGCTACCAAATTGTTAAGCAAGTGGGTAACTACGGCGAAAGCTTCGATCGCACGGTCGGCTCTGGCTCACCACTA
AAAATTGACCGCGGTGTGAATGCACTCTGGAATGCGGGCGGCTTTATGTACGCACCACCTATCCGTTAA

Upstream 100 bases:

>100_bases
ACCACATAGGCATCAACCTATAACTGAAGAAACACAACATAGCTGAACTCTTGTATCAGGTGTCACCTGGTCAAAAACGG
ATCAAACAGGAAGGATACAA

Downstream 100 bases:

>100_bases
TTGATAACTATAATCCCGACCACCTTAAAGCTGCAGTACGAGACGTGCGTACTGCGGCTTTAAGTAAAAGGAATCTGCGC
TTGGTTTAGCTCCGAGCACA

Product: amino acid ABC transporter, periplasmic amino acid-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 342; Mature: 341

Protein sequence:

>342_residues
MANKLTVLASVVAASSAMLSLSASAAESTLDKVLSQGFITCGVSTGLPGFSNPNAKGEWEGIDVEYCQAMAAAVLGDKTK
VKFVPLTAKERFTALQSGEIDVLSRNTTWTLQRDSALGLNFVGVNYYDGQGFMVKKDLGVKSAKELNGASVCVQSGTTTE
LNLADYFRNSGMTYKPVVFDTAAQTSKGFDAGRCDVLTTDQSGLYALRLNLEKPDSAVVLPEIISKEPLGPVVRQDDDKW
FNVAKWVLYAMVNAEEYGITSKNVDEMMKSDNPEVKRILGLDGPKGTGLGIRDDWSYQIVKQVGNYGESFDRTVGSGSPL
KIDRGVNALWNAGGFMYAPPIR

Sequences:

>Translated_342_residues
MANKLTVLASVVAASSAMLSLSASAAESTLDKVLSQGFITCGVSTGLPGFSNPNAKGEWEGIDVEYCQAMAAAVLGDKTK
VKFVPLTAKERFTALQSGEIDVLSRNTTWTLQRDSALGLNFVGVNYYDGQGFMVKKDLGVKSAKELNGASVCVQSGTTTE
LNLADYFRNSGMTYKPVVFDTAAQTSKGFDAGRCDVLTTDQSGLYALRLNLEKPDSAVVLPEIISKEPLGPVVRQDDDKW
FNVAKWVLYAMVNAEEYGITSKNVDEMMKSDNPEVKRILGLDGPKGTGLGIRDDWSYQIVKQVGNYGESFDRTVGSGSPL
KIDRGVNALWNAGGFMYAPPIR
>Mature_341_residues
ANKLTVLASVVAASSAMLSLSASAAESTLDKVLSQGFITCGVSTGLPGFSNPNAKGEWEGIDVEYCQAMAAAVLGDKTKV
KFVPLTAKERFTALQSGEIDVLSRNTTWTLQRDSALGLNFVGVNYYDGQGFMVKKDLGVKSAKELNGASVCVQSGTTTEL
NLADYFRNSGMTYKPVVFDTAAQTSKGFDAGRCDVLTTDQSGLYALRLNLEKPDSAVVLPEIISKEPLGPVVRQDDDKWF
NVAKWVLYAMVNAEEYGITSKNVDEMMKSDNPEVKRILGLDGPKGTGLGIRDDWSYQIVKQVGNYGESFDRTVGSGSPLK
IDRGVNALWNAGGFMYAPPIR

Specific function: Part of a binding-protein-dependent transport system for L-amino acids, affects the uptake as well as efflux of these amino acids [H]

COG id: COG0834

COG function: function code ET; ABC-type amino acid transport/signal transduction systems, periplasmic component/domain

Gene ontology:

Cell location: Periplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 3 family [H]

Homologues:

Organism=Escherichia coli, GI1786876, Length=217, Percent_Identity=26.2672811059908, Blast_Score=70, Evalue=2e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005768
- InterPro:   IPR001638
- InterPro:   IPR018313 [H]

Pfam domain/function: PF00497 SBP_bac_3 [H]

EC number: NA

Molecular weight: Translated: 36851; Mature: 36720

Theoretical pI: Translated: 4.94; Mature: 4.94

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MANKLTVLASVVAASSAMLSLSASAAESTLDKVLSQGFITCGVSTGLPGFSNPNAKGEWE
CCCHHHHHHHHHHHHHHHEEECHHHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCCCCC
GIDVEYCQAMAAAVLGDKTKVKFVPLTAKERFTALQSGEIDVLSRNTTWTLQRDSALGLN
CCCHHHHHHHHHHHHCCCCEEEEEEECHHHHHHHHCCCCEEEEECCCEEEEECCCCCCEE
FVGVNYYDGQGFMVKKDLGVKSAKELNGASVCVQSGTTTELNLADYFRNSGMTYKPVVFD
EEEEEEECCCCEEEEECCCCCCHHHCCCCEEEEECCCCCEEEHHHHHHCCCCEECCEEEE
TAAQTSKGFDAGRCDVLTTDQSGLYALRLNLEKPDSAVVLPEIISKEPLGPVVRQDDDKW
CCHHCCCCCCCCCCEEEEECCCCEEEEEEECCCCCCEEECHHHHCCCCCCCCCCCCCCHH
FNVAKWVLYAMVNAEEYGITSKNVDEMMKSDNPEVKRILGLDGPKGTGLGIRDDWSYQIV
HHHHHHHHHHHHCHHHHCCCCCCHHHHHHCCCCHHHHEECCCCCCCCCCCCCCCCHHHHH
KQVGNYGESFDRTVGSGSPLKIDRGVNALWNAGGFMYAPPIR
HHHHCCCHHHHHHCCCCCCEEECCCCHHHHCCCCEEECCCCC
>Mature Secondary Structure 
ANKLTVLASVVAASSAMLSLSASAAESTLDKVLSQGFITCGVSTGLPGFSNPNAKGEWE
CCHHHHHHHHHHHHHHHEEECHHHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCCCCC
GIDVEYCQAMAAAVLGDKTKVKFVPLTAKERFTALQSGEIDVLSRNTTWTLQRDSALGLN
CCCHHHHHHHHHHHHCCCCEEEEEEECHHHHHHHHCCCCEEEEECCCEEEEECCCCCCEE
FVGVNYYDGQGFMVKKDLGVKSAKELNGASVCVQSGTTTELNLADYFRNSGMTYKPVVFD
EEEEEEECCCCEEEEECCCCCCHHHCCCCEEEEECCCCCEEEHHHHHHCCCCEECCEEEE
TAAQTSKGFDAGRCDVLTTDQSGLYALRLNLEKPDSAVVLPEIISKEPLGPVVRQDDDKW
CCHHCCCCCCCCCCEEEEECCCCEEEEEEECCCCCCEEECHHHHCCCCCCCCCCCCCCHH
FNVAKWVLYAMVNAEEYGITSKNVDEMMKSDNPEVKRILGLDGPKGTGLGIRDDWSYQIV
HHHHHHHHHHHHCHHHHCCCCCCHHHHHHCCCCHHHHEECCCCCCCCCCCCCCCCHHHHH
KQVGNYGESFDRTVGSGSPLKIDRGVNALWNAGGFMYAPPIR
HHHHCCCHHHHHHCCCCCCEEECCCCHHHHCCCCEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8898392 [H]