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The map label for this gene is yhdX [H]

Identifier: 227081532

GI number: 227081532

Start: 1407268

End: 1408473

Strand: Reverse

Name: yhdX [H]

Synonym: VCM66_1316

Alternate gene names: 227081532

Gene position: 1408473-1407268 (Counterclockwise)

Preceding gene: 227081533

Following gene: 227081531

Centisome position: 48.69

GC content: 46.77

Gene sequence:

>1206_bases
ATGAAACCCACAAATAAAGCGACGCCAGAGACTTCTGACGCGCATTCCAAGCATACCAATTTGCTTTATAACCCAACCTT
CCGTTCGGTTGTGTTCCAACTTCTCGCCGTTTGTGTACTCGCATTTTTTCTCTACACCATAGTGAACAATGCGTTAACTA
ACCTTGAATCTCGAGGGATCGCAACGGGGTTCGCCTTTCTAGAGCAAACCGCTGGTTTTGGTATCAGCCAAAGCTTAATT
CCCTACGATGAAACTTACAGCTATGGCCGAACGTTTCTGGTGGGCTTGCTCAATACCGCTCTGGTTTCAGTACTCGGCAT
CTTATTAGCGACCATACTGGGATTTTTGATTGGCATTGCTCGCCTCTCCAGTAACTGGCTAATCAGCCGCTTAGCAGCGG
TCTACATCGAAACATTTCGTAATTTGCCACTGCTACTGCAAATATTCTTTTGGTATTTCGTTGTGCTTCAAGCCTTGCCA
TCGGCAAGGGAAAGCATGCATCTTGGCGAGTGGTTTTACCTCAACATAAAAGGTCTGTATCTCGCGAAGCCAATCTTTGA
ATCCGGTAGCATCTGGGTTCTGGTTGCCTTAATCGCTGGTATCATTGCCTGTTGGGTATTGAGTATCTGGGCAACAAATC
GCCAACGTTTAACGGGACAACAAACCCCGATGGGACGATACATACTCTTACTGTGTGTCACTTTTCCAGTGTTGGTTTAT
TTTCTACTTGGCCAACCTATCACAGCAGAATATCCCGTACTACGCGGATTCAACTTCCAAGGCGGGATCTCGGTACTGCC
TGAACTGGCGGCATTACTGGTCGCCTTGACCATCTATACCGCATCCTTCATCGCAGAGATTGTGCGTTCTGGGATCAATG
CGGTCAGCCACGGGCAAACGGAAGCAGCAATGTCTCTCGGTTTAACTCGTACGAAAACCTTAAAACTGGTCATTATTCCT
CAAGCACTCAGGATCATCATTCCACCGCTGACTAGCCAATATCTGAATCTAACCAAAAACTCCTCACTGGCCATGGCTAT
TGGCTACCCAGACTTGGTTTCTGTATTTGCGGGCACCACCCTCAACCAAACAGGACAAGCGATTGAGATCATTTCGATGA
CCATGTTGGTCTATCTCACGCTGAGTTTATTAACTTCAGCCTTAATGAACCTGTATAACCGTAAAGTGGCACTGGTGGAG
AGATAA

Upstream 100 bases:

>100_bases
TAAAGCTGCAGTACGAGACGTGCGTACTGCGGCTTTAAGTAAAAGGAATCTGCGCTTGGTTTAGCTCCGAGCACAAAAAT
GGATAAGAGGTTATTGTTGT

Downstream 100 bases:

>100_bases
TTATGGCAACACATCAATTTCAACCTAGCCTACCGCCGCCATCCAACACAACAGGGGTCGTCGGTTGGTTACGGAAAAAT
TTATTTAATGGCGTGTTTAA

Product: amino acid ABC transporter, permease protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 401; Mature: 401

Protein sequence:

>401_residues
MKPTNKATPETSDAHSKHTNLLYNPTFRSVVFQLLAVCVLAFFLYTIVNNALTNLESRGIATGFAFLEQTAGFGISQSLI
PYDETYSYGRTFLVGLLNTALVSVLGILLATILGFLIGIARLSSNWLISRLAAVYIETFRNLPLLLQIFFWYFVVLQALP
SARESMHLGEWFYLNIKGLYLAKPIFESGSIWVLVALIAGIIACWVLSIWATNRQRLTGQQTPMGRYILLLCVTFPVLVY
FLLGQPITAEYPVLRGFNFQGGISVLPELAALLVALTIYTASFIAEIVRSGINAVSHGQTEAAMSLGLTRTKTLKLVIIP
QALRIIIPPLTSQYLNLTKNSSLAMAIGYPDLVSVFAGTTLNQTGQAIEIISMTMLVYLTLSLLTSALMNLYNRKVALVE
R

Sequences:

>Translated_401_residues
MKPTNKATPETSDAHSKHTNLLYNPTFRSVVFQLLAVCVLAFFLYTIVNNALTNLESRGIATGFAFLEQTAGFGISQSLI
PYDETYSYGRTFLVGLLNTALVSVLGILLATILGFLIGIARLSSNWLISRLAAVYIETFRNLPLLLQIFFWYFVVLQALP
SARESMHLGEWFYLNIKGLYLAKPIFESGSIWVLVALIAGIIACWVLSIWATNRQRLTGQQTPMGRYILLLCVTFPVLVY
FLLGQPITAEYPVLRGFNFQGGISVLPELAALLVALTIYTASFIAEIVRSGINAVSHGQTEAAMSLGLTRTKTLKLVIIP
QALRIIIPPLTSQYLNLTKNSSLAMAIGYPDLVSVFAGTTLNQTGQAIEIISMTMLVYLTLSLLTSALMNLYNRKVALVE
R
>Mature_401_residues
MKPTNKATPETSDAHSKHTNLLYNPTFRSVVFQLLAVCVLAFFLYTIVNNALTNLESRGIATGFAFLEQTAGFGISQSLI
PYDETYSYGRTFLVGLLNTALVSVLGILLATILGFLIGIARLSSNWLISRLAAVYIETFRNLPLLLQIFFWYFVVLQALP
SARESMHLGEWFYLNIKGLYLAKPIFESGSIWVLVALIAGIIACWVLSIWATNRQRLTGQQTPMGRYILLLCVTFPVLVY
FLLGQPITAEYPVLRGFNFQGGISVLPELAALLVALTIYTASFIAEIVRSGINAVSHGQTEAAMSLGLTRTKTLKLVIIP
QALRIIIPPLTSQYLNLTKNSSLAMAIGYPDLVSVFAGTTLNQTGQAIEIISMTMLVYLTLSLLTSALMNLYNRKVALVE
R

Specific function: Probably part of the binding-protein-dependent transport system ydhWXYZ for an amino acid; probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG4597

COG function: function code E; ABC-type amino acid transport system, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI48994930, Length=378, Percent_Identity=54.2328042328042, Blast_Score=390, Evalue=1e-110,
Organism=Escherichia coli, GI1786874, Length=126, Percent_Identity=35.7142857142857, Blast_Score=88, Evalue=1e-18,
Organism=Escherichia coli, GI1786873, Length=130, Percent_Identity=33.8461538461538, Blast_Score=85, Evalue=8e-18,
Organism=Escherichia coli, GI1788226, Length=145, Percent_Identity=33.1034482758621, Blast_Score=82, Evalue=5e-17,
Organism=Escherichia coli, GI1787030, Length=133, Percent_Identity=32.3308270676692, Blast_Score=73, Evalue=3e-14,
Organism=Escherichia coli, GI87082239, Length=115, Percent_Identity=37.3913043478261, Blast_Score=73, Evalue=3e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010065
- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 44208; Mature: 44208

Theoretical pI: Translated: 9.56; Mature: 9.56

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKPTNKATPETSDAHSKHTNLLYNPTFRSVVFQLLAVCVLAFFLYTIVNNALTNLESRGI
CCCCCCCCCCCCCCCCCCCCCEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH
ATGFAFLEQTAGFGISQSLIPYDETYSYGRTFLVGLLNTALVSVLGILLATILGFLIGIA
HHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RLSSNWLISRLAAVYIETFRNLPLLLQIFFWYFVVLQALPSARESMHLGEWFYLNIKGLY
HHCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCHHHHHCCCCCEEEEEECCCE
LAKPIFESGSIWVLVALIAGIIACWVLSIWATNRQRLTGQQTPMGRYILLLCVTFPVLVY
EECHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHCCCCCCCCHHHHHHHHHHHHHHHH
FLLGQPITAEYPVLRGFNFQGGISVLPELAALLVALTIYTASFIAEIVRSGINAVSHGQT
HHHCCCCCCCCCHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHCCCH
EAAMSLGLTRTKTLKLVIIPQALRIIIPPLTSQYLNLTKNSSLAMAIGYPDLVSVFAGTT
HHHHHHCCCCCCEEEEEEEHHHHHHHCCCHHHHHHHHCCCCCEEEEECCHHHHHHHHCCC
LNQTGQAIEIISMTMLVYLTLSLLTSALMNLYNRKVALVER
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECC
>Mature Secondary Structure
MKPTNKATPETSDAHSKHTNLLYNPTFRSVVFQLLAVCVLAFFLYTIVNNALTNLESRGI
CCCCCCCCCCCCCCCCCCCCCEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH
ATGFAFLEQTAGFGISQSLIPYDETYSYGRTFLVGLLNTALVSVLGILLATILGFLIGIA
HHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RLSSNWLISRLAAVYIETFRNLPLLLQIFFWYFVVLQALPSARESMHLGEWFYLNIKGLY
HHCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCHHHHHCCCCCEEEEEECCCE
LAKPIFESGSIWVLVALIAGIIACWVLSIWATNRQRLTGQQTPMGRYILLLCVTFPVLVY
EECHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHCCCCCCCCHHHHHHHHHHHHHHHH
FLLGQPITAEYPVLRGFNFQGGISVLPELAALLVALTIYTASFIAEIVRSGINAVSHGQT
HHHCCCCCCCCCHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHCCCH
EAAMSLGLTRTKTLKLVIIPQALRIIIPPLTSQYLNLTKNSSLAMAIGYPDLVSVFAGTT
HHHHHHCCCCCCEEEEEEEHHHHHHHCCCHHHHHHHHCCCCCEEEEECCHHHHHHHHCCC
LNQTGQAIEIISMTMLVYLTLSLLTSALMNLYNRKVALVER
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]