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The map label for this gene is yhdY [H]

Identifier: 227081531

GI number: 227081531

Start: 1406168

End: 1407265

Strand: Reverse

Name: yhdY [H]

Synonym: VCM66_1315

Alternate gene names: 227081531

Gene position: 1407265-1406168 (Counterclockwise)

Preceding gene: 227081532

Following gene: 227081530

Centisome position: 48.65

GC content: 47.91

Gene sequence:

>1098_bases
ATGGCAACACATCAATTTCAACCTAGCCTACCGCCGCCATCCAACACAACAGGGGTCGTCGGTTGGTTACGGAAAAATTT
ATTTAATGGCGTGTTTAACTCAATCGCAACCTTGGTGTTAGGCTACTTAGCTATTCAAGGTCTCCTAAATATCCTCGATT
GGGCAATTTTTAACGCCAACTGGAGCGGAACCACGCGTAACGACTGCACCCTTGAGGGCGCTTGCTGGGTATTCATCAGT
GTTCGCTGGGAGCAGTTCATGTACGGCTTCTACCCCGCGGCAGAACTGTGGAGACCAAGGCTATTCTTCTTCACTCTGGC
TCTTTTTGTCGCACTGCTGGCTTATGAAAAAACACCAAAGCGAGGTTGGATTTGGCTGGTTTTCGTTAACATCTATCCCT
TCTTCGCTGCCCTACTTCTTTATGGTGGTGTCTTCGGGCTGGAAGTGGTCGAAACCCATAAATGGGGTGGATTGTTAGTC
ACTTTGATCATCGCTTTAGTCGGCATCATCGCTTCACTACCAATTGGCGTTGCACTGGCTTTAGGACGTCGCTCCGACAT
GCCCATTATTCGCAGCTTATGTACCGTCTACATTGAGGTATGGCGTGGGGTGCCTTTAATTACCGTACTTTTCATGGCTT
CGGTAATGCTGCCACTCTTTTTATCTCAAGGCAGTGAGATAGATAAGCTACTGCGTGCCTTGATTGGCGTGGTGATGTTC
AGTGCCGCGTACATGGCGGAAGTAATCCGTGGTGGTTTGCAAGCGATTCCCAAAGGCCAGTATGAGGCAGCCGATGCGCT
CGGTTTAAGTTACTGGAAAAAAATGGGGCTGATTATTCTGCCGCAAGCGCTGAAAATCACCATTCCATCGATTGTAAATA
CCTTTATTGGTCTGTTTAAAGACACCAGTCTGGTGTTGATTATCGGCATGTTTGATGTGCTCGGCATCGGACAATCCGCC
AATACCGACCCGAATTGGCTCGGTTTTGCTACAGAAAGTTATGTTTTTGTCGCGTTAGTGTTCTGGATCTTCTGCTTTGG
CATGTCGAGATACTCGATTTGGCTCGAAGGCAAACTCCATACCGGTCACAAACGATAA

Upstream 100 bases:

>100_bases
TCATTTCGATGACCATGTTGGTCTATCTCACGCTGAGTTTATTAACTTCAGCCTTAATGAACCTGTATAACCGTAAAGTG
GCACTGGTGGAGAGATAATT

Downstream 100 bases:

>100_bases
GTCACTTTGCAAGGAACGTATTATGACGCAACAACTCAATCAAGATTTTATGATTCAGATTAAAGACATGAATAAATGGT
ATGGTGAATTTCACGTCCTG

Product: amino acid ABC transporter, permease protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 365; Mature: 364

Protein sequence:

>365_residues
MATHQFQPSLPPPSNTTGVVGWLRKNLFNGVFNSIATLVLGYLAIQGLLNILDWAIFNANWSGTTRNDCTLEGACWVFIS
VRWEQFMYGFYPAAELWRPRLFFFTLALFVALLAYEKTPKRGWIWLVFVNIYPFFAALLLYGGVFGLEVVETHKWGGLLV
TLIIALVGIIASLPIGVALALGRRSDMPIIRSLCTVYIEVWRGVPLITVLFMASVMLPLFLSQGSEIDKLLRALIGVVMF
SAAYMAEVIRGGLQAIPKGQYEAADALGLSYWKKMGLIILPQALKITIPSIVNTFIGLFKDTSLVLIIGMFDVLGIGQSA
NTDPNWLGFATESYVFVALVFWIFCFGMSRYSIWLEGKLHTGHKR

Sequences:

>Translated_365_residues
MATHQFQPSLPPPSNTTGVVGWLRKNLFNGVFNSIATLVLGYLAIQGLLNILDWAIFNANWSGTTRNDCTLEGACWVFIS
VRWEQFMYGFYPAAELWRPRLFFFTLALFVALLAYEKTPKRGWIWLVFVNIYPFFAALLLYGGVFGLEVVETHKWGGLLV
TLIIALVGIIASLPIGVALALGRRSDMPIIRSLCTVYIEVWRGVPLITVLFMASVMLPLFLSQGSEIDKLLRALIGVVMF
SAAYMAEVIRGGLQAIPKGQYEAADALGLSYWKKMGLIILPQALKITIPSIVNTFIGLFKDTSLVLIIGMFDVLGIGQSA
NTDPNWLGFATESYVFVALVFWIFCFGMSRYSIWLEGKLHTGHKR
>Mature_364_residues
ATHQFQPSLPPPSNTTGVVGWLRKNLFNGVFNSIATLVLGYLAIQGLLNILDWAIFNANWSGTTRNDCTLEGACWVFISV
RWEQFMYGFYPAAELWRPRLFFFTLALFVALLAYEKTPKRGWIWLVFVNIYPFFAALLLYGGVFGLEVVETHKWGGLLVT
LIIALVGIIASLPIGVALALGRRSDMPIIRSLCTVYIEVWRGVPLITVLFMASVMLPLFLSQGSEIDKLLRALIGVVMFS
AAYMAEVIRGGLQAIPKGQYEAADALGLSYWKKMGLIILPQALKITIPSIVNTFIGLFKDTSLVLIIGMFDVLGIGQSAN
TDPNWLGFATESYVFVALVFWIFCFGMSRYSIWLEGKLHTGHKR

Specific function: Probably part of the binding-protein-dependent transport system ydhWXYZ for an amino acid; probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0765

COG function: function code E; ABC-type amino acid transport system, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI87082239, Length=357, Percent_Identity=55.7422969187675, Blast_Score=402, Evalue=1e-113,
Organism=Escherichia coli, GI1788226, Length=205, Percent_Identity=35.609756097561, Blast_Score=112, Evalue=5e-26,
Organism=Escherichia coli, GI1786873, Length=208, Percent_Identity=33.1730769230769, Blast_Score=109, Evalue=3e-25,
Organism=Escherichia coli, GI1787030, Length=163, Percent_Identity=34.9693251533742, Blast_Score=85, Evalue=8e-18,
Organism=Escherichia coli, GI1786874, Length=197, Percent_Identity=25.3807106598985, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI1788645, Length=178, Percent_Identity=27.5280898876405, Blast_Score=76, Evalue=4e-15,
Organism=Escherichia coli, GI48994930, Length=123, Percent_Identity=33.3333333333333, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1788646, Length=220, Percent_Identity=26.8181818181818, Blast_Score=69, Evalue=7e-13,
Organism=Escherichia coli, GI1787086, Length=169, Percent_Identity=29.585798816568, Blast_Score=64, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010065
- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 40699; Mature: 40568

Theoretical pI: Translated: 9.24; Mature: 9.24

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MATHQFQPSLPPPSNTTGVVGWLRKNLFNGVFNSIATLVLGYLAIQGLLNILDWAIFNAN
CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
WSGTTRNDCTLEGACWVFISVRWEQFMYGFYPAAELWRPRLFFFTLALFVALLAYEKTPK
CCCCCCCCCEECCEEEEEEEEHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCC
RGWIWLVFVNIYPFFAALLLYGGVFGLEVVETHKWGGLLVTLIIALVGIIASLPIGVALA
CCEEEEHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
LGRRSDMPIIRSLCTVYIEVWRGVPLITVLFMASVMLPLFLSQGSEIDKLLRALIGVVMF
HCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
SAAYMAEVIRGGLQAIPKGQYEAADALGLSYWKKMGLIILPQALKITIPSIVNTFIGLFK
HHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCEEECHHHHEEHHHHHHHHHHHHC
DTSLVLIIGMFDVLGIGQSANTDPNWLGFATESYVFVALVFWIFCFGMSRYSIWLEGKLH
CCHHHHHHHHHHHHCCCCCCCCCCCEEECCHHHHHHHHHHHHHHHHCCCCEEEEEEEEEC
TGHKR
CCCCC
>Mature Secondary Structure 
ATHQFQPSLPPPSNTTGVVGWLRKNLFNGVFNSIATLVLGYLAIQGLLNILDWAIFNAN
CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
WSGTTRNDCTLEGACWVFISVRWEQFMYGFYPAAELWRPRLFFFTLALFVALLAYEKTPK
CCCCCCCCCEECCEEEEEEEEHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCC
RGWIWLVFVNIYPFFAALLLYGGVFGLEVVETHKWGGLLVTLIIALVGIIASLPIGVALA
CCEEEEHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
LGRRSDMPIIRSLCTVYIEVWRGVPLITVLFMASVMLPLFLSQGSEIDKLLRALIGVVMF
HCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
SAAYMAEVIRGGLQAIPKGQYEAADALGLSYWKKMGLIILPQALKITIPSIVNTFIGLFK
HHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCEEECHHHHEEHHHHHHHHHHHHC
DTSLVLIIGMFDVLGIGQSANTDPNWLGFATESYVFVALVFWIFCFGMSRYSIWLEGKLH
CCHHHHHHHHHHHHCCCCCCCCCCCEEECCHHHHHHHHHHHHHHHHCCCCEEEEEEEEEC
TGHKR
CCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]