Click here to switch to the map view.

The map label for this gene is raiA [H]

Identifier: 227080886

GI number: 227080886

Start: 713692

End: 714018

Strand: Reverse

Name: raiA [H]

Synonym: VCM66_0664

Alternate gene names: 227080886

Gene position: 714018-713692 (Counterclockwise)

Preceding gene: 227080888

Following gene: 227080885

Centisome position: 24.68

GC content: 43.12

Gene sequence:

>327_bases
ATGAAAATCAACATCACTGGTAAAAACATCGAAGTCACCTCTGCAATCCGCAATCATATCGAGGGTAAACTCAAAAAATT
AGAAAAATGGCAAGTCGACATTATTGGCTGCCAAGCCAGCTTCAGCGAAGAGCCCAACAAACAGAAAAAATTTGAAGCAG
TCGTTAGCATTCCACGCGGTCAGTTAGTGGCTTCTGCAATTCACGAAGATTTGTATGCCGCCATTAACGAGGTAGAGCAA
AAACTCGAACGACAATTGAATAAACTACGCCACAAACCAGAAGCTCGCCGAGCGGATAAAACGGAACTGAGCGAAGAAGT
GGAATAA

Upstream 100 bases:

>100_bases
GAAAAACCCTCAAGATAAGGTGATCTAAATCACATTATTTCCGCGATAGCGCGCTAATCTGAACTCAACCCATAAGGGAT
GACACAGAGGAAAAAGCATT

Downstream 100 bases:

>100_bases
ATAGAATGATGGGAGATAGCGCCTTAGGGCGCTATTTTTTTGCTTGACGCTCTCTAGGGGCTTGCTTATTGTGTGGTGAC
TTACTTGGATAAATATGCAT

Product: putative sigma-54 modulation protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 108; Mature: 108

Protein sequence:

>108_residues
MKINITGKNIEVTSAIRNHIEGKLKKLEKWQVDIIGCQASFSEEPNKQKKFEAVVSIPRGQLVASAIHEDLYAAINEVEQ
KLERQLNKLRHKPEARRADKTELSEEVE

Sequences:

>Translated_108_residues
MKINITGKNIEVTSAIRNHIEGKLKKLEKWQVDIIGCQASFSEEPNKQKKFEAVVSIPRGQLVASAIHEDLYAAINEVEQ
KLERQLNKLRHKPEARRADKTELSEEVE
>Mature_108_residues
MKINITGKNIEVTSAIRNHIEGKLKKLEKWQVDIIGCQASFSEEPNKQKKFEAVVSIPRGQLVASAIHEDLYAAINEVEQ
KLERQLNKLRHKPEARRADKTELSEEVE

Specific function: During environmental stress such as cold shock or excessive cell density at stationary phase, stabilizes the 70S ribosome against dissociation, inhibits translation initiation and increase translation accuracy. When normal growth conditions are restored,

COG id: COG1544

COG function: function code J; Ribosome-associated protein Y (PSrp-1)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma(54) modulation protein family [H]

Homologues:

Organism=Escherichia coli, GI1788949, Length=100, Percent_Identity=54, Blast_Score=104, Evalue=1e-24,

Paralogues:

None

Copy number: 600 Molecules/Cell In: Early Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003489 [H]

Pfam domain/function: PF02482 Ribosomal_S30AE [H]

EC number: NA

Molecular weight: Translated: 12362; Mature: 12362

Theoretical pI: Translated: 8.50; Mature: 8.50

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKINITGKNIEVTSAIRNHIEGKLKKLEKWQVDIIGCQASFSEEPNKQKKFEAVVSIPRG
CEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCCCCHHHHHHHHHHCCCH
QLVASAIHEDLYAAINEVEQKLERQLNKLRHKPEARRADKTELSEEVE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHCCCHHHHHHCCC
>Mature Secondary Structure
MKINITGKNIEVTSAIRNHIEGKLKKLEKWQVDIIGCQASFSEEPNKQKKFEAVVSIPRG
CEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCCCCHHHHHHHHHHCCCH
QLVASAIHEDLYAAINEVEQKLERQLNKLRHKPEARRADKTELSEEVE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHCCCHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]