Click here to switch to the map view.

The map label for this gene is yfiO [C]

Identifier: 227080888

GI number: 227080888

Start: 714420

End: 715181

Strand: Reverse

Name: yfiO [C]

Synonym: VCM66_0666

Alternate gene names: 227080888

Gene position: 715181-714420 (Counterclockwise)

Preceding gene: 227080895

Following gene: 227080886

Centisome position: 24.73

GC content: 47.64

Gene sequence:

>762_bases
TTGAAAAGCAAGATTTGCAAGGAACTCCACCCTGACATGAAATACCAGACTTTATCAGGCCTACTCGCGTTATCCCTGTT
ATTTGGTTGCTCTAGCAGCCCAGATGTGGTGCCAGATGTACCGCCATCACAGCTGTACTCTGAAGCGCAAACCGCTCTAC
AAAGCGGAACGTGGTTAACCGCTATCGAAAAACTAGAGGCGCTCGATTCACGCTATCCATTTGGTGCTTATTCAGAGCAA
GTACAGCTCGATCTGATTTATGCCTACTACAAAAATGATGATCTGGCCCTTGGCCTCGCGACCATCGAACGTTTTACACG
CCTTAATCCAACCCATGAAAAAATGGATTGGGTACTCTACATGCGCGGTTTGACGCACATGGCGCAAGATCGCAACTTCA
TGCATGACCTGTTTAATATCGATCGCCGTGACCGCGATCCTGAACCCGTGAAAGCAGCCTTTGCGGATTTTAAGAAACTG
CTCCAGCGTTACCCAAACAGCCCATACGCAGAAGATGCGCAGCGTCGAATGTTTGCGCTCAAGAACCGTTTAGCGGAATA
CGATTTAGCGACCGCAGATTTCTACCTGCGCCGTGAAGCATGGATTGCAGCGATTAATCGCACTCAAGAGTTACAAAAAA
CCTATCCAGATACCGAAGCGGCACGTAAATCCTTAGAAATACAACTCGAGGCTTATCAGCAGCTTGGTTTAACCGACGCG
ATAGAGCGAACTAAGCAGTTAATGCAGCTTAACCCTTTATAA

Upstream 100 bases:

>100_bases
CCGTGAGACTAATAGTCACTAGTATGGAAAAATACGCCGACATTGTATCTGTTACTGCCAAGAAAGTAACGAAACGATTT
GCGCGCGGTTTACGCACCTA

Downstream 100 bases:

>100_bases
GGCGCTAGAACTCACCAACAAAAAGAGCCACAGCAATTGTGGCTCTTTTTGTTTTGATTTGTTATTGATTTGGCGTAGCG
ATGTTTCTCTTAGACGCCCC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 253; Mature: 253

Protein sequence:

>253_residues
MKSKICKELHPDMKYQTLSGLLALSLLFGCSSSPDVVPDVPPSQLYSEAQTALQSGTWLTAIEKLEALDSRYPFGAYSEQ
VQLDLIYAYYKNDDLALGLATIERFTRLNPTHEKMDWVLYMRGLTHMAQDRNFMHDLFNIDRRDRDPEPVKAAFADFKKL
LQRYPNSPYAEDAQRRMFALKNRLAEYDLATADFYLRREAWIAAINRTQELQKTYPDTEAARKSLEIQLEAYQQLGLTDA
IERTKQLMQLNPL

Sequences:

>Translated_253_residues
MKSKICKELHPDMKYQTLSGLLALSLLFGCSSSPDVVPDVPPSQLYSEAQTALQSGTWLTAIEKLEALDSRYPFGAYSEQ
VQLDLIYAYYKNDDLALGLATIERFTRLNPTHEKMDWVLYMRGLTHMAQDRNFMHDLFNIDRRDRDPEPVKAAFADFKKL
LQRYPNSPYAEDAQRRMFALKNRLAEYDLATADFYLRREAWIAAINRTQELQKTYPDTEAARKSLEIQLEAYQQLGLTDA
IERTKQLMQLNPL
>Mature_253_residues
MKSKICKELHPDMKYQTLSGLLALSLLFGCSSSPDVVPDVPPSQLYSEAQTALQSGTWLTAIEKLEALDSRYPFGAYSEQ
VQLDLIYAYYKNDDLALGLATIERFTRLNPTHEKMDWVLYMRGLTHMAQDRNFMHDLFNIDRRDRDPEPVKAAFADFKKL
LQRYPNSPYAEDAQRRMFALKNRLAEYDLATADFYLRREAWIAAINRTQELQKTYPDTEAARKSLEIQLEAYQQLGLTDA
IERTKQLMQLNPL

Specific function: Unknown

COG id: COG4105

COG function: function code R; DNA uptake lipoprotein

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0169 (ComL) family [H]

Homologues:

Organism=Escherichia coli, GI1788947, Length=239, Percent_Identity=50.6276150627615, Blast_Score=258, Evalue=3e-70,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017689
- InterPro:   IPR011990 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 29287; Mature: 29287

Theoretical pI: Translated: 5.75; Mature: 5.75

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKSKICKELHPDMKYQTLSGLLALSLLFGCSSSPDVVPDVPPSQLYSEAQTALQSGTWLT
CCCHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHH
AIEKLEALDSRYPFGAYSEQVQLDLIYAYYKNDDLALGLATIERFTRLNPTHEKMDWVLY
HHHHHHHHHCCCCCCCCCCHHEEEEEEEEECCCCHHHHHHHHHHHHHCCCCHHHHHHHHH
MRGLTHMAQDRNFMHDLFNIDRRDRDPEPVKAAFADFKKLLQRYPNSPYAEDAQRRMFAL
HHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
KNRLAEYDLATADFYLRREAWIAAINRTQELQKTYPDTEAARKSLEIQLEAYQQLGLTDA
HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCHHH
IERTKQLMQLNPL
HHHHHHHHHCCCC
>Mature Secondary Structure
MKSKICKELHPDMKYQTLSGLLALSLLFGCSSSPDVVPDVPPSQLYSEAQTALQSGTWLT
CCCHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHH
AIEKLEALDSRYPFGAYSEQVQLDLIYAYYKNDDLALGLATIERFTRLNPTHEKMDWVLY
HHHHHHHHHCCCCCCCCCCHHEEEEEEEEECCCCHHHHHHHHHHHHHCCCCHHHHHHHHH
MRGLTHMAQDRNFMHDLFNIDRRDRDPEPVKAAFADFKKLLQRYPNSPYAEDAQRRMFAL
HHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
KNRLAEYDLATADFYLRREAWIAAINRTQELQKTYPDTEAARKSLEIQLEAYQQLGLTDA
HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCHHH
IERTKQLMQLNPL
HHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 10952301 [H]