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The map label for this gene is radA [H]

Identifier: 226950962

GI number: 226950962

Start: 4004709

End: 4006067

Strand: Reverse

Name: radA [H]

Synonym: CLM_3979

Alternate gene names: 226950962

Gene position: 4006067-4004709 (Counterclockwise)

Preceding gene: 226950963

Following gene: 226950961

Centisome position: 96.41

GC content: 30.68

Gene sequence:

>1359_bases
ATGGCTAAAAATAAAATTGTTTATATATGTCAACAATGTGGATATGAATCGATAAAATGGTTAGGAAAATGTCCAGGATG
CAATTCATGGAATAGTATGGTAGAGGAAGAAAAGCAATCAACTAATAAGACTATAAAAAATATAAATATTAAATCAGAGC
CTAAAATAATATCTACAATAAAATCAAGTGAATATGAGAGATTAGATACTGGAATAAATGAACTGAATAGAGTCTTAGGC
GGTGGTATAGTTAAGGGCTCTTTAACTCTTATATCTGGGTCTCCTGGCATAGGAAAGTCTACAATACTTTTACAAGCTGC
TAATAATATTGCTACTAAGTATGGTAAGATTTTATATGTGTCTGGAGAAGAATCAGAAGAGCAGATAAAAATGAGAGCAG
ATAGGCTTAAGGTGATATCAAAAGATATATACATACTTTCAGAGACAAATGTGGATATAATAAAAGAGCATATTACTACA
ATTAATCCTAAATTTGTTATAATAGATTCTATACAGACCCTTTTTAAAAGTGAACTATCTTCAGCTCCAGGTACTGTGTC
TCAAGTTAGGCAATGTTCTAACGATATTATGCTTATAAGTAAAAGTAATAACATACCTTTTTTTATAGTAGCGCATGTTA
CAAAACAAGGAGAATTAGCAGGACCTAGAGTTTTAGAACATATGGTAGATACGGTTTTATCTTTTGAAGGAGAAAGAACC
CAGGAATTTAGGATTTTAAGAACAGTAAAAAATCGTTTTGGAACTACAAGTGAAATTGGAGTTTTTGAAATGGCAGGAGA
AGGGTTATTAGAAATAAGCAATCCCTCTGCTGTATTTTTAGAAGAAACTGAATTTCAAAGGGAAGGTTCTGTAATAATAG
GTATAATGGAAGGGTCTAGACCAATACTTATAGAAATACAAGCATTAGTAAGTGAAACGAAAGCTTATATGCCAAGAAGG
ACGGCAGTGGGAGTAGACACAGCTAGATTGAATCTAATATTAGCTGTGTTAGAAAAAAAATTAAATATACCTTTCTATAA
TTGTGATGTATATGTTAATGTAGTAGGAGGATTAGATTTAACAGGAACTTTTGCTGATTTGGGATTAGCATTAGCTTTAT
TATCTAGTGCTAAATCAAAAGATATAAAGTTACCTAAAGTTTTAGTGGTTGGAGAAATAGGACTTACAGGAGAGGTTCGC
CCCGTAAGTTTTTGTGATAGAATAGTAAATGAAGGTATAAAAATGGGATTTACCAATATAATTATACCTGATAGAAATAA
AGACAAAATTTCTGTTAAAAATAATGTTAACCTAATTGGTATATCTTCTTTAAGAGAAGGTATTAATAAAGTATTTTAA

Upstream 100 bases:

>100_bases
GCCAATAATTAAATTTATTTAATTATTGGTTTTTTTAAAATTATTTTACTAATTGATGTTATAATAATATTATTGTAATT
AAGGTTTTGGAGTTGATTAA

Downstream 100 bases:

>100_bases
TTGTGTAGGGTGAGAGAAGTGAGAATAGAAAAAGATAAAGAATTAATGAATATACTTAAAATAATGGCCCCAGGAACACC
CCTAAGAGAGGGGTTAGAGA

Product: DNA repair protein RadA

Products: NA

Alternate protein names: DNA repair protein sms homolog [H]

Number of amino acids: Translated: 452; Mature: 451

Protein sequence:

>452_residues
MAKNKIVYICQQCGYESIKWLGKCPGCNSWNSMVEEEKQSTNKTIKNINIKSEPKIISTIKSSEYERLDTGINELNRVLG
GGIVKGSLTLISGSPGIGKSTILLQAANNIATKYGKILYVSGEESEEQIKMRADRLKVISKDIYILSETNVDIIKEHITT
INPKFVIIDSIQTLFKSELSSAPGTVSQVRQCSNDIMLISKSNNIPFFIVAHVTKQGELAGPRVLEHMVDTVLSFEGERT
QEFRILRTVKNRFGTTSEIGVFEMAGEGLLEISNPSAVFLEETEFQREGSVIIGIMEGSRPILIEIQALVSETKAYMPRR
TAVGVDTARLNLILAVLEKKLNIPFYNCDVYVNVVGGLDLTGTFADLGLALALLSSAKSKDIKLPKVLVVGEIGLTGEVR
PVSFCDRIVNEGIKMGFTNIIIPDRNKDKISVKNNVNLIGISSLREGINKVF

Sequences:

>Translated_452_residues
MAKNKIVYICQQCGYESIKWLGKCPGCNSWNSMVEEEKQSTNKTIKNINIKSEPKIISTIKSSEYERLDTGINELNRVLG
GGIVKGSLTLISGSPGIGKSTILLQAANNIATKYGKILYVSGEESEEQIKMRADRLKVISKDIYILSETNVDIIKEHITT
INPKFVIIDSIQTLFKSELSSAPGTVSQVRQCSNDIMLISKSNNIPFFIVAHVTKQGELAGPRVLEHMVDTVLSFEGERT
QEFRILRTVKNRFGTTSEIGVFEMAGEGLLEISNPSAVFLEETEFQREGSVIIGIMEGSRPILIEIQALVSETKAYMPRR
TAVGVDTARLNLILAVLEKKLNIPFYNCDVYVNVVGGLDLTGTFADLGLALALLSSAKSKDIKLPKVLVVGEIGLTGEVR
PVSFCDRIVNEGIKMGFTNIIIPDRNKDKISVKNNVNLIGISSLREGINKVF
>Mature_451_residues
AKNKIVYICQQCGYESIKWLGKCPGCNSWNSMVEEEKQSTNKTIKNINIKSEPKIISTIKSSEYERLDTGINELNRVLGG
GIVKGSLTLISGSPGIGKSTILLQAANNIATKYGKILYVSGEESEEQIKMRADRLKVISKDIYILSETNVDIIKEHITTI
NPKFVIIDSIQTLFKSELSSAPGTVSQVRQCSNDIMLISKSNNIPFFIVAHVTKQGELAGPRVLEHMVDTVLSFEGERTQ
EFRILRTVKNRFGTTSEIGVFEMAGEGLLEISNPSAVFLEETEFQREGSVIIGIMEGSRPILIEIQALVSETKAYMPRRT
AVGVDTARLNLILAVLEKKLNIPFYNCDVYVNVVGGLDLTGTFADLGLALALLSSAKSKDIKLPKVLVVGEIGLTGEVRP
VSFCDRIVNEGIKMGFTNIIIPDRNKDKISVKNNVNLIGISSLREGINKVF

Specific function: May play a role in the repair of endogenous alkylation damage [H]

COG id: COG1066

COG function: function code O; Predicted ATP-dependent serine protease

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the recA family. RadA subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790850, Length=459, Percent_Identity=40.5228758169935, Blast_Score=352, Evalue=3e-98,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR014774
- InterPro:   IPR004504
- InterPro:   IPR008269
- InterPro:   IPR020568 [H]

Pfam domain/function: PF06745 KaiC; PF05362 Lon_C [H]

EC number: NA

Molecular weight: Translated: 49736; Mature: 49605

Theoretical pI: Translated: 8.25; Mature: 8.25

Prosite motif: PS50162 RECA_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAKNKIVYICQQCGYESIKWLGKCPGCNSWNSMVEEEKQSTNKTIKNINIKSEPKIISTI
CCCCCEEEEEHHCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHH
KSSEYERLDTGINELNRVLGGGIVKGSLTLISGSPGIGKSTILLQAANNIATKYGKILYV
HCCHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCCCEEEEEEHHHHHHCCCCEEEE
SGEESEEQIKMRADRLKVISKDIYILSETNVDIIKEHITTINPKFVIIDSIQTLFKSELS
ECCCCHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHCCCCCEEEEHHHHHHHHHHHC
SAPGTVSQVRQCSNDIMLISKSNNIPFFIVAHVTKQGELAGPRVLEHMVDTVLSFEGERT
CCCCHHHHHHHCCCCEEEEEECCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCH
QEFRILRTVKNRFGTTSEIGVFEMAGEGLLEISNPSAVFLEETEFQREGSVIIGIMEGSR
HHHHHHHHHHHHCCCCCCCCEEEECCCCEEEECCCCEEEEECCCCCCCCCEEEEEECCCC
PILIEIQALVSETKAYMPRRTAVGVDTARLNLILAVLEKKLNIPFYNCDVYVNVVGGLDL
CEEEEEHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEECEEEEEEECCCCC
TGTFADLGLALALLSSAKSKDIKLPKVLVVGEIGLTGEVRPVSFCDRIVNEGIKMGFTNI
CCHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHCCHHCCCEEE
IIPDRNKDKISVKNNVNLIGISSLREGINKVF
EECCCCCCEEEECCCCCEEEHHHHHHHHHHCC
>Mature Secondary Structure 
AKNKIVYICQQCGYESIKWLGKCPGCNSWNSMVEEEKQSTNKTIKNINIKSEPKIISTI
CCCCEEEEEHHCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHH
KSSEYERLDTGINELNRVLGGGIVKGSLTLISGSPGIGKSTILLQAANNIATKYGKILYV
HCCHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCCCEEEEEEHHHHHHCCCCEEEE
SGEESEEQIKMRADRLKVISKDIYILSETNVDIIKEHITTINPKFVIIDSIQTLFKSELS
ECCCCHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHCCCCCEEEEHHHHHHHHHHHC
SAPGTVSQVRQCSNDIMLISKSNNIPFFIVAHVTKQGELAGPRVLEHMVDTVLSFEGERT
CCCCHHHHHHHCCCCEEEEEECCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCH
QEFRILRTVKNRFGTTSEIGVFEMAGEGLLEISNPSAVFLEETEFQREGSVIIGIMEGSR
HHHHHHHHHHHHCCCCCCCCEEEECCCCEEEECCCCEEEEECCCCCCCCCEEEEEECCCC
PILIEIQALVSETKAYMPRRTAVGVDTARLNLILAVLEKKLNIPFYNCDVYVNVVGGLDL
CEEEEEHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEECEEEEEEECCCCC
TGTFADLGLALALLSSAKSKDIKLPKVLVVGEIGLTGEVRPVSFCDRIVNEGIKMGFTNI
CCHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHCCHHCCCEEE
IIPDRNKDKISVKNNVNLIGISSLREGINKVF
EECCCCCCEEEECCCCCEEEHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11058132 [H]