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The map label for this gene is yijO [C]

Identifier: 226950194

GI number: 226950194

Start: 3156725

End: 3158791

Strand: Reverse

Name: yijO [C]

Synonym: CLM_3148

Alternate gene names: 226950194

Gene position: 3158791-3156725 (Counterclockwise)

Preceding gene: 226950196

Following gene: 226950193

Centisome position: 76.02

GC content: 25.21

Gene sequence:

>2067_bases
ATGCCAAGAGAATTTGTAGAGTATACAAATGATTTGCCCATAAAAGTTTCTATGCAAAATATAAAGAAAAGGCCTATTCA
TTGGCACAATGCTATGGAAGTTATATATGTTTTAGAAGGTAGCATAAAAATAACTATAGAAACAGAAAGTCATAGGGTAA
ATAAGCAAGAAATAGGGATAATAAACCCAGAGGAAGCCCATAGTATAAAAAGTATAACTAATAATAATAAAGTGCTTATA
TTTCAAATAGATACTAGTTTTTTTAATAAATATTATGATATAGAAAATATGTTTTTTTATACGGATTTCTCTGAACCAGA
AGCTCAAAAACATGAAAAGTATGATATATTAAGAAAATATCTCTCTACCATGCTTTGTGAAATAGCTCAAAAGGGTGATA
ATTATGAAGATGTAGTAGAGGAAATTTTAGTAGATCTTTTATATCATCTTATAAATAATTTTCATTATTTAATATATGAT
GAAGAAGAATTAAAAGAAAATGAGGTACAGTTTGAAAGATATGATAGAATAATAAAATATATATATTCTAATTATAATAA
CAAAATAAGTATTCAAGATATAGCTAGACTAGAATTCTTAAGCTCTCATTATTTATCTAATGAAATGAAAAATAAGGTAG
GATATAGTTTTAACGATTTTGTAAATTTAACTAGAGTAGAAGAAGCTATAAAATTACTTTTAGATACAGACAAAACCATA
TCTGAAATATCCGAAGAACTAGGCTTTTCACATACCCGGTATTTTAATAAACATTTTAAGAAACATTATAAATGTACTCC
AATGCAATATAGAAAAAAGTATAAAGTAGATGAAGAAACCTATGAAAGTCTGAAAGTTTATGAAAAATTAAAATTAAAGG
ATGCATATGAGTATTTAATGCATTATTTAGAAGATTACCCACGATTCAATTATGAAGGGAAAATTATAAAAATTCATGTG
GATTTATCTAAAGATACAGGGGAATTGGATGAAAATTGGCATGATATTATTAATTTAGGTAGTGCTAAAGAAGTATTAAA
AGGTAATCATGGAAAACTTATAAAGGAATTTCAAAAATATATAGAATGTGAATATGCAATTATACAAAATATATTTTCGA
AGGATATGAATGTTTTTTCAACAGAAAAGGATAGATTCTTTAATTGGTATGAGATAAGACAAGTATTTGAATTTATATAT
GATTTAGATTTAAAACCTGCTATACTAATAGATTTTCATAAGTATAAAGTGGAATTTTTCTTGGCACTTTTTAAGGATTT
TATAGATTACTTTACAGATTTTTTTGGAGATAAAGAAATTAAGAAATGGAGATTTTATTTAAAAAATTCCTTAGACGAAA
ATAAAAAGAGTTTAGAAAACTTTCTAAAAGAATATGAAGATATAGAATTTATAAATTGGGATTTAGACTATAAGGAAGTG
AATAATATTTATGATACTGCCTACATGGTCCCCTACATATTAAATCAATACTTAAATAAAAAATCAAATGTAATCTTTTT
AACTACTTTTGATGAAATATATGGAGGAGAGTATATAAATAATGAATTGTTTTATGGTGGTTCTGGAATGATAAATCGCC
AAGGAATAAAAAAGCCTTCTTACTATGCTTATTATCTTTTATCTAAATTGGGCAATGAGGTAATAGAAAAGGGAGATGGA
TATATAGTTACTAAAGAAGATGATGATATTCAAATTCTTGTTTATTCCCATAGCGAAGAATTAGAGTCTTTGATTTCTTT
AGATGATTTGTATAAAAGAAGAGGTTTAAAAGAAACCGCAGAAAAGAAATTTTCTATAAATATAGCAGCGCTACCTTATA
ATTATAAAATAGTTACTTATAAAATAGATGAAGGGAAAGGATCTTCTTATAATAATTGGTTATCTATGGGTAAGCCAAAG
AGAATAGATGAATATGAGAGAGATTTATTAATAAAAAGTTCTGTACCCAATATAAAATTAGGTTTTGCTAAAAAATCTCC
TATATATAATATAGTTTCCAAGATAGAAGGATATGGAGCATTTTTATTTATACTGCAAAGAGTATAA

Upstream 100 bases:

>100_bases
TTTTGATATAATATTGTTGTAGGATTAAAACAGGAACATAAATAACTTTATTTAAATTATGATATAATAGACACAGTTAA
AAACTGATAGGAGGAAGTTT

Downstream 100 bases:

>100_bases
ATATATTTTTAGATAAAACTTTCTTAAAAATAAAAAAATTTCAAATGAAGAATAATATTATAAAGAATATTATGAACATA
TAGTTCTCAACTATATAATG

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 688; Mature: 687

Protein sequence:

>688_residues
MPREFVEYTNDLPIKVSMQNIKKRPIHWHNAMEVIYVLEGSIKITIETESHRVNKQEIGIINPEEAHSIKSITNNNKVLI
FQIDTSFFNKYYDIENMFFYTDFSEPEAQKHEKYDILRKYLSTMLCEIAQKGDNYEDVVEEILVDLLYHLINNFHYLIYD
EEELKENEVQFERYDRIIKYIYSNYNNKISIQDIARLEFLSSHYLSNEMKNKVGYSFNDFVNLTRVEEAIKLLLDTDKTI
SEISEELGFSHTRYFNKHFKKHYKCTPMQYRKKYKVDEETYESLKVYEKLKLKDAYEYLMHYLEDYPRFNYEGKIIKIHV
DLSKDTGELDENWHDIINLGSAKEVLKGNHGKLIKEFQKYIECEYAIIQNIFSKDMNVFSTEKDRFFNWYEIRQVFEFIY
DLDLKPAILIDFHKYKVEFFLALFKDFIDYFTDFFGDKEIKKWRFYLKNSLDENKKSLENFLKEYEDIEFINWDLDYKEV
NNIYDTAYMVPYILNQYLNKKSNVIFLTTFDEIYGGEYINNELFYGGSGMINRQGIKKPSYYAYYLLSKLGNEVIEKGDG
YIVTKEDDDIQILVYSHSEELESLISLDDLYKRRGLKETAEKKFSINIAALPYNYKIVTYKIDEGKGSSYNNWLSMGKPK
RIDEYERDLLIKSSVPNIKLGFAKKSPIYNIVSKIEGYGAFLFILQRV

Sequences:

>Translated_688_residues
MPREFVEYTNDLPIKVSMQNIKKRPIHWHNAMEVIYVLEGSIKITIETESHRVNKQEIGIINPEEAHSIKSITNNNKVLI
FQIDTSFFNKYYDIENMFFYTDFSEPEAQKHEKYDILRKYLSTMLCEIAQKGDNYEDVVEEILVDLLYHLINNFHYLIYD
EEELKENEVQFERYDRIIKYIYSNYNNKISIQDIARLEFLSSHYLSNEMKNKVGYSFNDFVNLTRVEEAIKLLLDTDKTI
SEISEELGFSHTRYFNKHFKKHYKCTPMQYRKKYKVDEETYESLKVYEKLKLKDAYEYLMHYLEDYPRFNYEGKIIKIHV
DLSKDTGELDENWHDIINLGSAKEVLKGNHGKLIKEFQKYIECEYAIIQNIFSKDMNVFSTEKDRFFNWYEIRQVFEFIY
DLDLKPAILIDFHKYKVEFFLALFKDFIDYFTDFFGDKEIKKWRFYLKNSLDENKKSLENFLKEYEDIEFINWDLDYKEV
NNIYDTAYMVPYILNQYLNKKSNVIFLTTFDEIYGGEYINNELFYGGSGMINRQGIKKPSYYAYYLLSKLGNEVIEKGDG
YIVTKEDDDIQILVYSHSEELESLISLDDLYKRRGLKETAEKKFSINIAALPYNYKIVTYKIDEGKGSSYNNWLSMGKPK
RIDEYERDLLIKSSVPNIKLGFAKKSPIYNIVSKIEGYGAFLFILQRV
>Mature_687_residues
PREFVEYTNDLPIKVSMQNIKKRPIHWHNAMEVIYVLEGSIKITIETESHRVNKQEIGIINPEEAHSIKSITNNNKVLIF
QIDTSFFNKYYDIENMFFYTDFSEPEAQKHEKYDILRKYLSTMLCEIAQKGDNYEDVVEEILVDLLYHLINNFHYLIYDE
EELKENEVQFERYDRIIKYIYSNYNNKISIQDIARLEFLSSHYLSNEMKNKVGYSFNDFVNLTRVEEAIKLLLDTDKTIS
EISEELGFSHTRYFNKHFKKHYKCTPMQYRKKYKVDEETYESLKVYEKLKLKDAYEYLMHYLEDYPRFNYEGKIIKIHVD
LSKDTGELDENWHDIINLGSAKEVLKGNHGKLIKEFQKYIECEYAIIQNIFSKDMNVFSTEKDRFFNWYEIRQVFEFIYD
LDLKPAILIDFHKYKVEFFLALFKDFIDYFTDFFGDKEIKKWRFYLKNSLDENKKSLENFLKEYEDIEFINWDLDYKEVN
NIYDTAYMVPYILNQYLNKKSNVIFLTTFDEIYGGEYINNELFYGGSGMINRQGIKKPSYYAYYLLSKLGNEVIEKGDGY
IVTKEDDDIQILVYSHSEELESLISLDDLYKRRGLKETAEKKFSINIAALPYNYKIVTYKIDEGKGSSYNNWLSMGKPKR
IDEYERDLLIKSSVPNIKLGFAKKSPIYNIVSKIEGYGAFLFILQRV

Specific function: Unknown

COG id: COG2207

COG function: function code K; AraC-type DNA-binding domain-containing proteins

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 HTH araC/xylS-type DNA-binding domains [H]

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017853
- InterPro:   IPR013781
- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR003313
- InterPro:   IPR020449
- InterPro:   IPR018060 [H]

Pfam domain/function: PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 82389; Mature: 82257

Theoretical pI: Translated: 5.36; Mature: 5.36

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPREFVEYTNDLPIKVSMQNIKKRPIHWHNAMEVIYVLEGSIKITIETESHRVNKQEIGI
CCCHHHHHCCCCCEEEEHHHHCCCCCCHHHHEEEEEEEECCEEEEEECCCCCCCHHHCCC
INPEEAHSIKSITNNNKVLIFQIDTSFFNKYYDIENMFFYTDFSEPEAQKHEKYDILRKY
CCCHHHHHHHHHCCCCEEEEEEECHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHHHH
LSTMLCEIAQKGDNYEDVVEEILVDLLYHLINNFHYLIYDEEELKENEVQFERYDRIIKY
HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCEEEEECHHHHHHHHHHHHHHHHHHHH
IYSNYNNKISIQDIARLEFLSSHYLSNEMKNKVGYSFNDFVNLTRVEEAIKLLLDTDKTI
HHHCCCCEEEHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCHHH
SEISEELGFSHTRYFNKHFKKHYKCTPMQYRKKYKVDEETYESLKVYEKLKLKDAYEYLM
HHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
HYLEDYPRFNYEGKIIKIHVDLSKDTGELDENWHDIINLGSAKEVLKGNHGKLIKEFQKY
HHHHHCCCCCCCCEEEEEEEEECCCCCCCCCCHHHHHCCCCHHHHHCCCCCHHHHHHHHH
IECEYAIIQNIFSKDMNVFSTEKDRFFNWYEIRQVFEFIYDLDLKPAILIDFHKYKVEFF
HHHHHHHHHHHHHCCCCCCCCCHHHHCHHHHHHHHHHHHHCCCCCCEEEEEHHHHHHHHH
LALFKDFIDYFTDFFGDKEIKKWRFYLKNSLDENKKSLENFLKEYEDIEFINWDLDYKEV
HHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEECCCCHHHH
NNIYDTAYMVPYILNQYLNKKSNVIFLTTFDEIYGGEYINNELFYGGSGMINRQGIKKPS
HHHHHHHHHHHHHHHHHHCCCCCEEEEEECHHHHCCCEECCCEEECCCCCCCCCCCCCCC
YYAYYLLSKLGNEVIEKGDGYIVTKEDDDIQILVYSHSEELESLISLDDLYKRRGLKETA
HHHHHHHHHHHHHHHHCCCCEEEEECCCCEEEEEECCHHHHHHHHHHHHHHHHCCCHHHH
EKKFSINIAALPYNYKIVTYKIDEGKGSSYNNWLSMGKPKRIDEYERDLLIKSSVPNIKL
CCEEEEEEEEECCCEEEEEEEEECCCCCCCHHHHHCCCCCCCCHHHHCEEEECCCCCEEE
GFAKKSPIYNIVSKIEGYGAFLFILQRV
ECCCCCHHHHHHHHHCCCHHHHHHHHCC
>Mature Secondary Structure 
PREFVEYTNDLPIKVSMQNIKKRPIHWHNAMEVIYVLEGSIKITIETESHRVNKQEIGI
CCHHHHHCCCCCEEEEHHHHCCCCCCHHHHEEEEEEEECCEEEEEECCCCCCCHHHCCC
INPEEAHSIKSITNNNKVLIFQIDTSFFNKYYDIENMFFYTDFSEPEAQKHEKYDILRKY
CCCHHHHHHHHHCCCCEEEEEEECHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHHHH
LSTMLCEIAQKGDNYEDVVEEILVDLLYHLINNFHYLIYDEEELKENEVQFERYDRIIKY
HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCEEEEECHHHHHHHHHHHHHHHHHHHH
IYSNYNNKISIQDIARLEFLSSHYLSNEMKNKVGYSFNDFVNLTRVEEAIKLLLDTDKTI
HHHCCCCEEEHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCHHH
SEISEELGFSHTRYFNKHFKKHYKCTPMQYRKKYKVDEETYESLKVYEKLKLKDAYEYLM
HHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
HYLEDYPRFNYEGKIIKIHVDLSKDTGELDENWHDIINLGSAKEVLKGNHGKLIKEFQKY
HHHHHCCCCCCCCEEEEEEEEECCCCCCCCCCHHHHHCCCCHHHHHCCCCCHHHHHHHHH
IECEYAIIQNIFSKDMNVFSTEKDRFFNWYEIRQVFEFIYDLDLKPAILIDFHKYKVEFF
HHHHHHHHHHHHHCCCCCCCCCHHHHCHHHHHHHHHHHHHCCCCCCEEEEEHHHHHHHHH
LALFKDFIDYFTDFFGDKEIKKWRFYLKNSLDENKKSLENFLKEYEDIEFINWDLDYKEV
HHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEECCCCHHHH
NNIYDTAYMVPYILNQYLNKKSNVIFLTTFDEIYGGEYINNELFYGGSGMINRQGIKKPS
HHHHHHHHHHHHHHHHHHCCCCCEEEEEECHHHHCCCEECCCEEECCCCCCCCCCCCCCC
YYAYYLLSKLGNEVIEKGDGYIVTKEDDDIQILVYSHSEELESLISLDDLYKRRGLKETA
HHHHHHHHHHHHHHHHCCCCEEEEECCCCEEEEEECCHHHHHHHHHHHHHHHHCCCHHHH
EKKFSINIAALPYNYKIVTYKIDEGKGSSYNNWLSMGKPKRIDEYERDLLIKSSVPNIKL
CCEEEEEEEEECCCEEEEEEEEECCCCCCCHHHHHCCCCCCCCHHHHCEEEECCCCCEEE
GFAKKSPIYNIVSKIEGYGAFLFILQRV
ECCCCCHHHHHHHHHCCCHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 12044378 [H]