Click here to switch to the map view.

The map label for this gene is ydgJ [H]

Identifier: 226949302

GI number: 226949302

Start: 2287848

End: 2288912

Strand: Direct

Name: ydgJ [H]

Synonym: CLM_2221

Alternate gene names: 226949302

Gene position: 2287848-2288912 (Clockwise)

Preceding gene: 226949296

Following gene: 226949308

Centisome position: 55.06

GC content: 29.39

Gene sequence:

>1065_bases
ATGAGAAAAGTAATTAATATTGGATTAATAGGCTATGGATCTGCTGGTAAAATATTTCATGCTCCAATGATTGCTAGCCT
TGAAGGATTAAATTTATATAAAGTCTATGAAACTAGAGAAGAAAATATAAATGCATTAAGAAAGCTGTTCCAAAATGCAT
TAGTTACTAATAATGTAGATGAAATCTTGGAAGATGAAAATATAGAATTAGTAATCATAGCCACCCCTAATTCTATTCAC
TATACTTTAGCAAAAAAAGCTTTGGAAAAGGGTAAAAATGTAGTTTTAGAAAAACCCTTTACCGTTAATACTAAAGAAGC
AGATGAGCTTATAAAGTTAGCAAAGAATAAAAATAAATTATTAACTGTTCACCATAACAGAAGATGGGATAGTGATTTTA
GAACAGTAAAAAAAGTTATAGAAAATAATCTACTGGGAGAAATAGTAGAATATGAGGCTCATTTTGATAGATTTAGAAAT
TATTTAAAGGAAAACTCTTGGAAAGAAGAAAATCACGCTGGTTCCGGAATATTATATGACTTAGGATCTCACCTTATAGA
TCAAGCTCAATGTTTATTTGGATTACCTAAAGAGATTTTTGCTGATCTAAGAATACAAAGGGAGAACAGTAATATTATTG
ACAATTTTGAAGTAATATTAAATTATGATAAATTAAAAGTTACTTTAAAAGCAGGTATGCTGGTTAGAGAAAAGGGCCCT
CATTTTATAGTTTTAGGTACTAAAGGCTCTTTTATTAAGTATGGAATGGATATACAAGAGGAAAATCTGAAAAATGGATT
AATACCTAAAGACTTTAACGATTGGGGCAAAGAACCTGAAACTCTATGGGGAAAAATAAATACTGAAGTGAATGAGTTGC
ATATGGATGGGAAAATAGAAAGTGAATTAGGGGATTATAGATCATTCTATAAAAATGTATACCTAAGTATTTTAGGCGAA
GAAGAATTAGAAGTAAAGCCTATCCAAGCTAGGAATACCATAAGAATTATAGAACTAGCTCAAAAAAGTAGTGAAGAAAA
AATGTGGATAAAATTCACACCATAA

Upstream 100 bases:

>100_bases
TATTTGAAATAAGTATATGTATGCTTTACCACACTATATATAGAAAGGAAGTGAATATTAGTGAGTTTATATACCTTATA
TATTCCCACTAAAATAAACT

Downstream 100 bases:

>100_bases
ATCTATTTTATTATATCCCCTCTTCAAATACATCTATGTGAATATATATTTTAAAACCATAAAATATATATTCACATAGA
TTTTTATATTGGTCTTTTTA

Product: oxidoreductase family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 354; Mature: 354

Protein sequence:

>354_residues
MRKVINIGLIGYGSAGKIFHAPMIASLEGLNLYKVYETREENINALRKLFQNALVTNNVDEILEDENIELVIIATPNSIH
YTLAKKALEKGKNVVLEKPFTVNTKEADELIKLAKNKNKLLTVHHNRRWDSDFRTVKKVIENNLLGEIVEYEAHFDRFRN
YLKENSWKEENHAGSGILYDLGSHLIDQAQCLFGLPKEIFADLRIQRENSNIIDNFEVILNYDKLKVTLKAGMLVREKGP
HFIVLGTKGSFIKYGMDIQEENLKNGLIPKDFNDWGKEPETLWGKINTEVNELHMDGKIESELGDYRSFYKNVYLSILGE
EELEVKPIQARNTIRIIELAQKSSEEKMWIKFTP

Sequences:

>Translated_354_residues
MRKVINIGLIGYGSAGKIFHAPMIASLEGLNLYKVYETREENINALRKLFQNALVTNNVDEILEDENIELVIIATPNSIH
YTLAKKALEKGKNVVLEKPFTVNTKEADELIKLAKNKNKLLTVHHNRRWDSDFRTVKKVIENNLLGEIVEYEAHFDRFRN
YLKENSWKEENHAGSGILYDLGSHLIDQAQCLFGLPKEIFADLRIQRENSNIIDNFEVILNYDKLKVTLKAGMLVREKGP
HFIVLGTKGSFIKYGMDIQEENLKNGLIPKDFNDWGKEPETLWGKINTEVNELHMDGKIESELGDYRSFYKNVYLSILGE
EELEVKPIQARNTIRIIELAQKSSEEKMWIKFTP
>Mature_354_residues
MRKVINIGLIGYGSAGKIFHAPMIASLEGLNLYKVYETREENINALRKLFQNALVTNNVDEILEDENIELVIIATPNSIH
YTLAKKALEKGKNVVLEKPFTVNTKEADELIKLAKNKNKLLTVHHNRRWDSDFRTVKKVIENNLLGEIVEYEAHFDRFRN
YLKENSWKEENHAGSGILYDLGSHLIDQAQCLFGLPKEIFADLRIQRENSNIIDNFEVILNYDKLKVTLKAGMLVREKGP
HFIVLGTKGSFIKYGMDIQEENLKNGLIPKDFNDWGKEPETLWGKINTEVNELHMDGKIESELGDYRSFYKNVYLSILGE
EELEVKPIQARNTIRIIELAQKSSEEKMWIKFTP

Specific function: Unknown

COG id: COG0673

COG function: function code R; Predicted dehydrogenases and related proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the gfo/idh/mocA family [H]

Homologues:

Organism=Escherichia coli, GI87081947, Length=348, Percent_Identity=39.9425287356322, Blast_Score=260, Evalue=1e-70,
Organism=Escherichia coli, GI1789848, Length=339, Percent_Identity=35.693215339233, Blast_Score=200, Evalue=1e-52,
Organism=Escherichia coli, GI1787574, Length=192, Percent_Identity=27.0833333333333, Blast_Score=86, Evalue=4e-18,
Organism=Escherichia coli, GI145693182, Length=202, Percent_Identity=25.2475247524752, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI87082405, Length=278, Percent_Identity=25.1798561151079, Blast_Score=63, Evalue=2e-11,
Organism=Drosophila melanogaster, GI24581115, Length=202, Percent_Identity=24.2574257425743, Blast_Score=67, Evalue=2e-11,
Organism=Drosophila melanogaster, GI24581117, Length=192, Percent_Identity=27.0833333333333, Blast_Score=65, Evalue=7e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016040
- InterPro:   IPR000683
- InterPro:   IPR004104 [H]

Pfam domain/function: PF01408 GFO_IDH_MocA; PF02894 GFO_IDH_MocA_C [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 40836; Mature: 40836

Theoretical pI: Translated: 6.44; Mature: 6.44

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRKVINIGLIGYGSAGKIFHAPMIASLEGLNLYKVYETREENINALRKLFQNALVTNNVD
CCCEEEEEEEEECCCCCEEECCHHHHCCCCEEEEEECCHHHHHHHHHHHHHHHHHCCCHH
EILEDENIELVIIATPNSIHYTLAKKALEKGKNVVLEKPFTVNTKEADELIKLAKNKNKL
HHHCCCCEEEEEEECCCCCHHHHHHHHHHCCCCEEEECCEECCCHHHHHHHHHHCCCCCE
LTVHHNRRWDSDFRTVKKVIENNLLGEIVEYEAHFDRFRNYLKENSWKEENHAGSGILYD
EEEECCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHH
LGSHLIDQAQCLFGLPKEIFADLRIQRENSNIIDNFEVILNYDKLKVTLKAGMLVREKGP
HHHHHHHHHHHHHCCCHHHHHHCEEEECCCCCCCCEEEEEEECCEEEEEECCEEEEECCC
HFIVLGTKGSFIKYGMDIQEENLKNGLIPKDFNDWGKEPETLWGKINTEVNELHMDGKIE
EEEEEECCCCEEEECCCCCHHHHHCCCCCCCCHHHCCCHHHHHHCCCCCCEEEEECCCCH
SELGDYRSFYKNVYLSILGEEELEVKPIQARNTIRIIELAQKSSEEKMWIKFTP
HHHHHHHHHHHHHHHHEECCCCCEEEEECCCCCEEEEEEHHCCCCCEEEEEECC
>Mature Secondary Structure
MRKVINIGLIGYGSAGKIFHAPMIASLEGLNLYKVYETREENINALRKLFQNALVTNNVD
CCCEEEEEEEEECCCCCEEECCHHHHCCCCEEEEEECCHHHHHHHHHHHHHHHHHCCCHH
EILEDENIELVIIATPNSIHYTLAKKALEKGKNVVLEKPFTVNTKEADELIKLAKNKNKL
HHHCCCCEEEEEEECCCCCHHHHHHHHHHCCCCEEEECCEECCCHHHHHHHHHHCCCCCE
LTVHHNRRWDSDFRTVKKVIENNLLGEIVEYEAHFDRFRNYLKENSWKEENHAGSGILYD
EEEECCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHH
LGSHLIDQAQCLFGLPKEIFADLRIQRENSNIIDNFEVILNYDKLKVTLKAGMLVREKGP
HHHHHHHHHHHHHCCCHHHHHHCEEEECCCCCCCCEEEEEEECCEEEEEECCEEEEECCC
HFIVLGTKGSFIKYGMDIQEENLKNGLIPKDFNDWGKEPETLWGKINTEVNELHMDGKIE
EEEEEECCCCEEEECCCCCHHHHHCCCCCCCCHHHCCCHHHHHHCCCCCCEEEEECCCCH
SELGDYRSFYKNVYLSILGEEELEVKPIQARNTIRIIELAQKSSEEKMWIKFTP
HHHHHHHHHHHHHHHHEECCCCCEEEEECCCCCEEEEEEHHCCCCCEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]