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The map label for this gene is yndE [H]

Identifier: 226949275

GI number: 226949275

Start: 2257201

End: 2258289

Strand: Direct

Name: yndE [H]

Synonym: CLM_2194

Alternate gene names: 226949275

Gene position: 2257201-2258289 (Clockwise)

Preceding gene: 226949274

Following gene: 226949276

Centisome position: 54.32

GC content: 27.09

Gene sequence:

>1089_bases
ATGAACAATAAAGAGGATGCCTTAACTGAAAGTCAGTTAACCTTTATGTTTATAGGTAGCCTAATTGGAATAACCCTACT
AAGTTTACCTTTAGTTCCAATAAAAATAGCTAAACAAGACGCTTGGATAGCTGCCTTTTTAGGAATGATTTATCCAACAT
ATGTTGTATTTATAGCAATTTATATAAGAAAAAAACACCCTAAAAAAAATATTCTAGATTTGAGCAAAAAAATTTATGGA
AAGATCTTGGGAAACATATTAAATTTAATATTTATATCATTTTTTTTTCTCATTGCTACAGATGTAGCCGCAGGTATAAA
TAATGTTCTAAGAAATTACATGGTTAGCTTTTTAAATTCCTGGAATATATTATCTCTATTGTTTTTGGGAGCTGCTTATA
CTGTTTATGGAGGAACTAAAACAATAGGGAAATTAAATGAAGTATTGTTTTATATTACCTTTATAGTATTTTTAATACCT
GTTTTTTCAATAAAAAAGGCTGATATACTAAATCTACAACCGGTTCTGGGCGGTGGAGTAAAAAATATTATAAAGGCTAC
AAAAAAAACCATTATAGCCTACTCAGGAGCAGAAATGCTTCTTATATTATACCCCCTTGTACATGAAAATGTAAAACTGA
AAAAAATAGGTCTTAAAAGCATATCCTTCATTACAATTTTATATACTTTATATACTTTACTTACTATATTATACTTAGGA
ATTGGTGCCGCTGATAAATTTTTATGGCCAGTTATAACCATATCTAGAGGTATAACAATCCCTGTAATAAATTCTTTTAG
CTATATATTTTTATCTCTATGGACTATGACTATGTTTAAATGTATATCTGTACATTATTATTTATTTGCTCATGGATTAA
ATAAAATATTTAATAAACTTAGTAGAAAAAGCTGGGCAATACTACTCTATCCTATAATGATTATAGGATCAAGTTTATAC
GGTATTCCAGTTATGAGGAGAAATTTTTTAGATAAAATTTTCCCACCCTATGTAATTTTTAATATTATATTTATTTCTAT
TACTGCTTTATTAGTAGCTTTAGGAAAAGGTGATGAAAATGAAAAATAA

Upstream 100 bases:

>100_bases
AGCCCTGTTTATAAAATGAATAAGCGTCCAAAAGTTATCCCTAATTCAAATCCAACTAGACAAAGTAATTTTAGAGATTT
GTTTAGGAGGAAAAATAATG

Downstream 100 bases:

>100_bases
AATGAAAATAATAATAAGAGTTTCTTTTGTTTTAATTATAATTGTTAATTTAATAGGGAAAAGAGGGACTGTGGTAGAAG
AACTGAATCTTCCCAATAGC

Product: spore germination protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 362; Mature: 362

Protein sequence:

>362_residues
MNNKEDALTESQLTFMFIGSLIGITLLSLPLVPIKIAKQDAWIAAFLGMIYPTYVVFIAIYIRKKHPKKNILDLSKKIYG
KILGNILNLIFISFFFLIATDVAAGINNVLRNYMVSFLNSWNILSLLFLGAAYTVYGGTKTIGKLNEVLFYITFIVFLIP
VFSIKKADILNLQPVLGGGVKNIIKATKKTIIAYSGAEMLLILYPLVHENVKLKKIGLKSISFITILYTLYTLLTILYLG
IGAADKFLWPVITISRGITIPVINSFSYIFLSLWTMTMFKCISVHYYLFAHGLNKIFNKLSRKSWAILLYPIMIIGSSLY
GIPVMRRNFLDKIFPPYVIFNIIFISITALLVALGKGDENEK

Sequences:

>Translated_362_residues
MNNKEDALTESQLTFMFIGSLIGITLLSLPLVPIKIAKQDAWIAAFLGMIYPTYVVFIAIYIRKKHPKKNILDLSKKIYG
KILGNILNLIFISFFFLIATDVAAGINNVLRNYMVSFLNSWNILSLLFLGAAYTVYGGTKTIGKLNEVLFYITFIVFLIP
VFSIKKADILNLQPVLGGGVKNIIKATKKTIIAYSGAEMLLILYPLVHENVKLKKIGLKSISFITILYTLYTLLTILYLG
IGAADKFLWPVITISRGITIPVINSFSYIFLSLWTMTMFKCISVHYYLFAHGLNKIFNKLSRKSWAILLYPIMIIGSSLY
GIPVMRRNFLDKIFPPYVIFNIIFISITALLVALGKGDENEK
>Mature_362_residues
MNNKEDALTESQLTFMFIGSLIGITLLSLPLVPIKIAKQDAWIAAFLGMIYPTYVVFIAIYIRKKHPKKNILDLSKKIYG
KILGNILNLIFISFFFLIATDVAAGINNVLRNYMVSFLNSWNILSLLFLGAAYTVYGGTKTIGKLNEVLFYITFIVFLIP
VFSIKKADILNLQPVLGGGVKNIIKATKKTIIAYSGAEMLLILYPLVHENVKLKKIGLKSISFITILYTLYTLLTILYLG
IGAADKFLWPVITISRGITIPVINSFSYIFLSLWTMTMFKCISVHYYLFAHGLNKIFNKLSRKSWAILLYPIMIIGSSLY
GIPVMRRNFLDKIFPPYVIFNIIFISITALLVALGKGDENEK

Specific function: Involved in the germinative response to L-alanine. Could be an amino acid transporter [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the amino acid-polyamine-organocation (APC) superfamily. Spore germination protein (SGP) (TC 2.A.3.9) family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002293
- InterPro:   IPR004761 [H]

Pfam domain/function: PF03845 Spore_permease [H]

EC number: NA

Molecular weight: Translated: 40818; Mature: 40818

Theoretical pI: Translated: 10.31; Mature: 10.31

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNNKEDALTESQLTFMFIGSLIGITLLSLPLVPIKIAKQDAWIAAFLGMIYPTYVVFIAI
CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCHHHHHHHHHHHHHHHHHHHHH
YIRKKHPKKNILDLSKKIYGKILGNILNLIFISFFFLIATDVAAGINNVLRNYMVSFLNS
HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
WNILSLLFLGAAYTVYGGTKTIGKLNEVLFYITFIVFLIPVFSIKKADILNLQPVLGGGV
CHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHCCCH
KNIIKATKKTIIAYSGAEMLLILYPLVHENVKLKKIGLKSISFITILYTLYTLLTILYLG
HHHHHHHHHHHEEECCHHHHHHHHHHHHCCCEEEHHCCHHHHHHHHHHHHHHHHHHHHHH
IGAADKFLWPVITISRGITIPVINSFSYIFLSLWTMTMFKCISVHYYLFAHGLNKIFNKL
CCCHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SRKSWAILLYPIMIIGSSLYGIPVMRRNFLDKIFPPYVIFNIIFISITALLVALGKGDEN
HHCCHHHHHHHHHHHCCCHHCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCC
EK
CC
>Mature Secondary Structure
MNNKEDALTESQLTFMFIGSLIGITLLSLPLVPIKIAKQDAWIAAFLGMIYPTYVVFIAI
CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCHHHHHHHHHHHHHHHHHHHHH
YIRKKHPKKNILDLSKKIYGKILGNILNLIFISFFFLIATDVAAGINNVLRNYMVSFLNS
HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
WNILSLLFLGAAYTVYGGTKTIGKLNEVLFYITFIVFLIPVFSIKKADILNLQPVLGGGV
CHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHCCCH
KNIIKATKKTIIAYSGAEMLLILYPLVHENVKLKKIGLKSISFITILYTLYTLLTILYLG
HHHHHHHHHHHEEECCHHHHHHHHHHHHCCCEEEHHCCHHHHHHHHHHHHHHHHHHHHHH
IGAADKFLWPVITISRGITIPVINSFSYIFLSLWTMTMFKCISVHYYLFAHGLNKIFNKL
CCCHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SRKSWAILLYPIMIIGSSLYGIPVMRRNFLDKIFPPYVIFNIIFISITALLVALGKGDEN
HHCCHHHHHHHHHHHCCCHHCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCC
EK
CC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]