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The map label for this gene is gerKA [H]

Identifier: 226949274

GI number: 226949274

Start: 2255709

End: 2257211

Strand: Direct

Name: gerKA [H]

Synonym: CLM_2193

Alternate gene names: 226949274

Gene position: 2255709-2257211 (Clockwise)

Preceding gene: 226949273

Following gene: 226949275

Centisome position: 54.29

GC content: 28.14

Gene sequence:

>1503_bases
ATGAAAAATAAGAACCTAAATTCACTTCAGGATAAAATTCATTCTATTAAAACTTTAGTTGGAGAAAAAAATGATTTAAT
AATAAAAGAGCTTATATTATGCAAAACCTCCAATATGGAGGCAACTTTAATATACATAGATGGATTAGTTAATAACCAAA
CTATAGATAGAGATATTCTTAAACCTTTAATGTTTAATATAGAAGAGGATTTAAGCATTATCCATGACTTAGAGGAATAT
CTTTGTAAAAAATATATATCTCTTAGTAATACCTATTTAGAAGAAGATATTAATAATGTTGTTTTTCATTTAAAAAGAGG
AAAAACAATCCTGATTATATCTGGGAAATCAAAATTTATAATTCTAGATACTACTGGTGGAAGTTACAGAAACATTTCAG
ACCCTATTAATGAAACTTCTGTAAGATCTTCTAGAGAAAGTTTTATAGAAAAATTAGAAACCAATATAAGCCTATTAAGA
AGACGAATAAGGGATAATAATTTAGTAGAAGAAAAATTAGTTATCGGAAGAAGAAGTCAAACGGACGTAGTGTTAATGTA
CATTGATAATATAGCAGATAAAAATATAGTTGCAGATATAAAATCACGATTAAACTTAATAGATGTAGATGGTTTTGTAG
GTACTGGTATGCTAGAACAATTTATAGAATATAACCCTTATAGTATATTTCCACAGGGTTATTTTACAGAAAGACCAGAT
ATAGTAGAAGCCAATCTACTTGAAGGTAGAATTGCTATTATTGCTGATGGAACCCCCTTCGTAGTAACAGTACCAGCAGT
ATTTTTTGAATTTTTTGAAGCAATTGAAGATTATACTCAAAGGACAGTAATATCTTCCTTTAATAGAATATTAAGATATA
TTGCAACTTTTATAGTTATAACCTTACCAGCTGTCTATATAACTTTAATAAAATTCAACCCAGAATTAATTCCCTTTAAG
TTCATAGGCGCCATTATTGAATCACGAAAAGGAATAGCTTTAACTCCTTTTATGTCTATATTGTCCATGAATATAATTAT
AGACTTCTTAAGAGAAGGTGGTTTAAGGCTACCTTTTAAGATAGGTCAAACCTTAAGTGTGGTTGGCGGTATTATAATTG
GCGATGCAGCATTAAAAGCAAAAATAGTTAGTTCCACTACCTTACTTGTAGTAGGAATTTCTACAGTAGCTACTTTTTTA
ATACCTAACTATGAAATGTCTATTTCTATAAGATTAATAACTTATCCTATGCTTTTTTTAGGAAATTTTTTAGGCATGTT
TGGTATTACAATAGGTTGGTTTTTTTTAATAGCTTATTTATGTACTTTAGAAAGCTACGGAGTACCCTATTTTAAAATAT
ATAAAAGTGACCTAAAGGATATATTTGTAAGAAGCCCTGTTTATAAAATGAATAAGCGTCCAAAAGTTATCCCTAATTCA
AATCCAACTAGACAAAGTAATTTTAGAGATTTGTTTAGGAGGAAAAATAATGATGAACAATAA

Upstream 100 bases:

>100_bases
AAAAATGATGAAAATTGATTTATATTTTTTGTATAGTTGCTTTATCCTAAGGGAATAATTATTTTATGTATAATATTTCT
TATAAAGGGGTGAGGTGTTT

Downstream 100 bases:

>100_bases
AGAGGATGCCTTAACTGAAAGTCAGTTAACCTTTATGTTTATAGGTAGCCTAATTGGAATAACCCTACTAAGTTTACCTT
TAGTTCCAATAAAAATAGCT

Product: spore germination protein GerA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 500; Mature: 500

Protein sequence:

>500_residues
MKNKNLNSLQDKIHSIKTLVGEKNDLIIKELILCKTSNMEATLIYIDGLVNNQTIDRDILKPLMFNIEEDLSIIHDLEEY
LCKKYISLSNTYLEEDINNVVFHLKRGKTILIISGKSKFIILDTTGGSYRNISDPINETSVRSSRESFIEKLETNISLLR
RRIRDNNLVEEKLVIGRRSQTDVVLMYIDNIADKNIVADIKSRLNLIDVDGFVGTGMLEQFIEYNPYSIFPQGYFTERPD
IVEANLLEGRIAIIADGTPFVVTVPAVFFEFFEAIEDYTQRTVISSFNRILRYIATFIVITLPAVYITLIKFNPELIPFK
FIGAIIESRKGIALTPFMSILSMNIIIDFLREGGLRLPFKIGQTLSVVGGIIIGDAALKAKIVSSTTLLVVGISTVATFL
IPNYEMSISIRLITYPMLFLGNFLGMFGITIGWFFLIAYLCTLESYGVPYFKIYKSDLKDIFVRSPVYKMNKRPKVIPNS
NPTRQSNFRDLFRRKNNDEQ

Sequences:

>Translated_500_residues
MKNKNLNSLQDKIHSIKTLVGEKNDLIIKELILCKTSNMEATLIYIDGLVNNQTIDRDILKPLMFNIEEDLSIIHDLEEY
LCKKYISLSNTYLEEDINNVVFHLKRGKTILIISGKSKFIILDTTGGSYRNISDPINETSVRSSRESFIEKLETNISLLR
RRIRDNNLVEEKLVIGRRSQTDVVLMYIDNIADKNIVADIKSRLNLIDVDGFVGTGMLEQFIEYNPYSIFPQGYFTERPD
IVEANLLEGRIAIIADGTPFVVTVPAVFFEFFEAIEDYTQRTVISSFNRILRYIATFIVITLPAVYITLIKFNPELIPFK
FIGAIIESRKGIALTPFMSILSMNIIIDFLREGGLRLPFKIGQTLSVVGGIIIGDAALKAKIVSSTTLLVVGISTVATFL
IPNYEMSISIRLITYPMLFLGNFLGMFGITIGWFFLIAYLCTLESYGVPYFKIYKSDLKDIFVRSPVYKMNKRPKVIPNS
NPTRQSNFRDLFRRKNNDEQ
>Mature_500_residues
MKNKNLNSLQDKIHSIKTLVGEKNDLIIKELILCKTSNMEATLIYIDGLVNNQTIDRDILKPLMFNIEEDLSIIHDLEEY
LCKKYISLSNTYLEEDINNVVFHLKRGKTILIISGKSKFIILDTTGGSYRNISDPINETSVRSSRESFIEKLETNISLLR
RRIRDNNLVEEKLVIGRRSQTDVVLMYIDNIADKNIVADIKSRLNLIDVDGFVGTGMLEQFIEYNPYSIFPQGYFTERPD
IVEANLLEGRIAIIADGTPFVVTVPAVFFEFFEAIEDYTQRTVISSFNRILRYIATFIVITLPAVYITLIKFNPELIPFK
FIGAIIESRKGIALTPFMSILSMNIIIDFLREGGLRLPFKIGQTLSVVGGIIIGDAALKAKIVSSTTLLVVGISTVATFL
IPNYEMSISIRLITYPMLFLGNFLGMFGITIGWFFLIAYLCTLESYGVPYFKIYKSDLKDIFVRSPVYKMNKRPKVIPNS
NPTRQSNFRDLFRRKNNDEQ

Specific function: Involved in the germination response to the combination of glucose, fructose, L-asparagine, and KCl [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the gerABKA family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004995 [H]

Pfam domain/function: PF03323 GerA [H]

EC number: NA

Molecular weight: Translated: 57018; Mature: 57018

Theoretical pI: Translated: 8.62; Mature: 8.62

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKNKNLNSLQDKIHSIKTLVGEKNDLIIKELILCKTSNMEATLIYIDGLVNNQTIDRDIL
CCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCHHHH
KPLMFNIEEDLSIIHDLEEYLCKKYISLSNTYLEEDINNVVFHLKRGKTILIISGKSKFI
HHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCEEEEEECCCCEE
ILDTTGGSYRNISDPINETSVRSSRESFIEKLETNISLLRRRIRDNNLVEEKLVIGRRSQ
EEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCC
TDVVLMYIDNIADKNIVADIKSRLNLIDVDGFVGTGMLEQFIEYNPYSIFPQGYFTERPD
CCEEEEEECCCCCCHHHHHHHHCCCEEECCCCCCHHHHHHHHHCCCCEECCCCCCCCCCC
IVEANLLEGRIAIIADGTPFVVTVPAVFFEFFEAIEDYTQRTVISSFNRILRYIATFIVI
CEEEEECCCEEEEEECCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TLPAVYITLIKFNPELIPFKFIGAIIESRKGIALTPFMSILSMNIIIDFLREGGLRLPFK
HHHHHHHHHEECCCCCCHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHHHHHCCCCCCCHH
IGQTLSVVGGIIIGDAALKAKIVSSTTLLVVGISTVATFLIPNYEMSISIRLITYPMLFL
HCCHHHHHHHHHEECHHHHHHHHCCCEEEEEEHHHHHHHHCCCCEEEEEEEHHHHHHHHH
GNFLGMFGITIGWFFLIAYLCTLESYGVPYFKIYKSDLKDIFVRSPVYKMNKRPKVIPNS
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHCCCCCCCCCCC
NPTRQSNFRDLFRRKNNDEQ
CCCCCHHHHHHHHCCCCCCC
>Mature Secondary Structure
MKNKNLNSLQDKIHSIKTLVGEKNDLIIKELILCKTSNMEATLIYIDGLVNNQTIDRDIL
CCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCHHHH
KPLMFNIEEDLSIIHDLEEYLCKKYISLSNTYLEEDINNVVFHLKRGKTILIISGKSKFI
HHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCEEEEEECCCCEE
ILDTTGGSYRNISDPINETSVRSSRESFIEKLETNISLLRRRIRDNNLVEEKLVIGRRSQ
EEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCC
TDVVLMYIDNIADKNIVADIKSRLNLIDVDGFVGTGMLEQFIEYNPYSIFPQGYFTERPD
CCEEEEEECCCCCCHHHHHHHHCCCEEECCCCCCHHHHHHHHHCCCCEECCCCCCCCCCC
IVEANLLEGRIAIIADGTPFVVTVPAVFFEFFEAIEDYTQRTVISSFNRILRYIATFIVI
CEEEEECCCEEEEEECCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TLPAVYITLIKFNPELIPFKFIGAIIESRKGIALTPFMSILSMNIIIDFLREGGLRLPFK
HHHHHHHHHEECCCCCCHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHHHHHCCCCCCCHH
IGQTLSVVGGIIIGDAALKAKIVSSTTLLVVGISTVATFLIPNYEMSISIRLITYPMLFL
HCCHHHHHHHHHEECHHHHHHHHCCCEEEEEEHHHHHHHHCCCCEEEEEEEHHHHHHHHH
GNFLGMFGITIGWFFLIAYLCTLESYGVPYFKIYKSDLKDIFVRSPVYKMNKRPKVIPNS
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHCCCCCCCCCCC
NPTRQSNFRDLFRRKNNDEQ
CCCCCHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8969502; 9384377 [H]