Click here to switch to the map view.

The map label for this gene is 226948754

Identifier: 226948754

GI number: 226948754

Start: 1702109

End: 1702591

Strand: Direct

Name: 226948754

Synonym: CLM_1655

Alternate gene names: NA

Gene position: 1702109-1702591 (Clockwise)

Preceding gene: 226948753

Following gene: 226948755

Centisome position: 40.96

GC content: 29.4

Gene sequence:

>483_bases
ATGTCAAAAGCAAGAGTCCCATTAGAAATGCAAAAAAAACATTTAACACATGAAGAAAAAATTCAAAAAGAACAAGAAGA
AGAAATTTTGACATTAGGAAAAGACCAATTAGAAAATCCACCTTCTTGGCTTATAGATGGCATTGCAATAGGAGAATTTA
AAAGGATAGTTAAAGAAAATGAGAAGGTTAATATAATTGGTAACTTAGATGTAAATAATTTAGGTGCATATTGTAATTCA
TATTCAATGTACTTAAAAGCAACAGAAGGACTTAAAGGTAAATCATTAGTTTTAAGGAAAATAACAAAGAATGGACCTAT
AACAGTGGAAAATCCATTAATTAAAGTTCAGAAAAATTATGCAGAAGAAATGAGAAAATTTGCTTCACTATGCGGAATGA
CTATTGACAGCAGATTGAAATGTGCGACAGTTAAGACTACTAAACAGCAAGAAGATATAGTAGATGAATTCGGGGATATT
TAA

Upstream 100 bases:

>100_bases
GATCTCTTCTAGACCGCATCCCTAATGTTCTTTCCGCAAATTTCCCAATAAAAAATTAGAAAGGTAAATTTTAAAAAAGA
AAGAAGGTGAAAAATAATAT

Downstream 100 bases:

>100_bases
TGACAATTAAAGAAGAGCTGATTCAATATGCTAATGATTGTATTAACAATAAAGTTATAAGTGGTCAAAAACATAAGTGG
GCATGTTTAAGGTTTTTAGA

Product: phage terminase small subunit, P27 family

Products: NA

Alternate protein names: Phage Terminase; Phage Terminase Like Small Subunit Protein; Bacteriophage Terminase Small Subunit

Number of amino acids: Translated: 160; Mature: 159

Protein sequence:

>160_residues
MSKARVPLEMQKKHLTHEEKIQKEQEEEILTLGKDQLENPPSWLIDGIAIGEFKRIVKENEKVNIIGNLDVNNLGAYCNS
YSMYLKATEGLKGKSLVLRKITKNGPITVENPLIKVQKNYAEEMRKFASLCGMTIDSRLKCATVKTTKQQEDIVDEFGDI

Sequences:

>Translated_160_residues
MSKARVPLEMQKKHLTHEEKIQKEQEEEILTLGKDQLENPPSWLIDGIAIGEFKRIVKENEKVNIIGNLDVNNLGAYCNS
YSMYLKATEGLKGKSLVLRKITKNGPITVENPLIKVQKNYAEEMRKFASLCGMTIDSRLKCATVKTTKQQEDIVDEFGDI
>Mature_159_residues
SKARVPLEMQKKHLTHEEKIQKEQEEEILTLGKDQLENPPSWLIDGIAIGEFKRIVKENEKVNIIGNLDVNNLGAYCNSY
SMYLKATEGLKGKSLVLRKITKNGPITVENPLIKVQKNYAEEMRKFASLCGMTIDSRLKCATVKTTKQQEDIVDEFGDI

Specific function: Unknown

COG id: COG3747

COG function: function code L; Phage terminase, small subunit

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 18168; Mature: 18037

Theoretical pI: Translated: 8.04; Mature: 8.04

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKARVPLEMQKKHLTHEEKIQKEQEEEILTLGKDQLENPPSWLIDGIAIGEFKRIVKEN
CCCCCCCHHHHHHHCCHHHHHHHHHHHHHHHHCHHHCCCCHHHHHHHHHHHHHHHHHHCC
EKVNIIGNLDVNNLGAYCNSYSMYLKATEGLKGKSLVLRKITKNGPITVENPLIKVQKNY
CEEEEEECCCCHHHHHHHCCHHEEEEECCCCCCHHHHHHHHHCCCCEEECCCHHHHHHHH
AEEMRKFASLCGMTIDSRLKCATVKTTKQQEDIVDEFGDI
HHHHHHHHHHHCCCCCCCEEEEEECCCHHHHHHHHHHCCC
>Mature Secondary Structure 
SKARVPLEMQKKHLTHEEKIQKEQEEEILTLGKDQLENPPSWLIDGIAIGEFKRIVKEN
CCCCCCHHHHHHHCCHHHHHHHHHHHHHHHHCHHHCCCCHHHHHHHHHHHHHHHHHHCC
EKVNIIGNLDVNNLGAYCNSYSMYLKATEGLKGKSLVLRKITKNGPITVENPLIKVQKNY
CEEEEEECCCCHHHHHHHCCHHEEEEECCCCCCHHHHHHHHHCCCCEEECCCHHHHHHHH
AEEMRKFASLCGMTIDSRLKCATVKTTKQQEDIVDEFGDI
HHHHHHHHHHHCCCCCCCEEEEEECCCHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA