| Definition | Clostridium botulinum A2 str. Kyoto chromosome, complete genome. |
|---|---|
| Accession | NC_012563 |
| Length | 4,155,278 |
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The map label for this gene is ymfN [H]
Identifier: 226948755
GI number: 226948755
Start: 1702591
End: 1704333
Strand: Direct
Name: ymfN [H]
Synonym: CLM_1656
Alternate gene names: 226948755
Gene position: 1702591-1704333 (Clockwise)
Preceding gene: 226948754
Following gene: 226948756
Centisome position: 40.97
GC content: 29.09
Gene sequence:
>1743_bases ATGACAATTAAAGAAGAGCTGATTCAATATGCTAATGATTGTATTAACAATAAAGTTATAAGTGGTCAAAAACATAAGTG GGCATGTTTAAGGTTTTTAGAGGACTTAAAAAAGTCAGAATTAAATATATTAAAAGAACCTTTTAATTATTACTGGAATG AAGAAGAAGCTTCAAAAATAGTTAAATGGTTTTCTTATTTAAAACATAGCAAGGGTGTATTAGCAGGTAAGTTTATAGAG TTAAACATCTGGCAAAAATTTTGTTTGTGTCAAATTTATGGCTGGGAGCATAAAGAAACTCATTTAAGAAGATTTACTAA AAGCTTTATTGAAGTTGCTAGAAAAAATGCTAAATCTCAAATGGAAGCTGGCGTTACTTTGTATGAAATGTCAGTTAGAG CAACTAGAAATAGAGAAATCTATGAATGTTATTGTGCTGGTGTAAAAAGAAAACAATCAGAAGTTATATTTAATGAATGT AAAAATTTATTACGTGGCTCACCACTGAAAAAGAAATTTAAAATAAATAAAGGGACAATAATTCACATAAAAACAGGTAG TACATTAGAGCCGCTAAATAAACAGGATGGTAAAGAAGGGGATGGTAGTAATCCAGCGTTACTGGTATTGGATGAATACC ATCAACATAAAACTACTGAATTTTATGATTTAGGGTTAGGTGGGAATACTAAAGAAAGTCTGCTTATGATAATAACTACA GCGGGAGTAGATTTAACTTATCCATGCTTTACTCAAGAATATTCGTATTGTTCAAAAGTATTAGACCCTAACATTGATAT AATTAATGATGAATATTATATTGATATTTGTGAAGTTGACGAAGATGATGACGAAGATAATGAAGAAAATTGGCATAAAG CTAATCCTGTAAGAATGACTTATGAAGCGGGTATTAAAAAAATTAAAGAAGAATATAAGATTGCTAAAGAAATACCCGAA AAAATGAGTGCTTTTTTAACTAAATGCTTAAATAAGTGGGTGCAAGCTAAAAAGAATGGTTATATGGATATGGCTAAATG GAAAAAATGTGAAGTTGAAAAGATACCATATAACTTGAAAAATAGAATAGTATATGTTGGATTTGATATGTCAGCGAAGA TAGATTTAACTTCGGTGGCTTTTATTATACCTATTTTAAGCAATGAAATAGATAAAACAGGTAAAAAAATAGTTAAATAT TTATGCTTTTCACATTCATTTATACCAAATCGAGAAAAGTTAAGAGAAAGAACTAAGATAGACAAAGTTCCTTATGACGC ATGGGAGCGATTAGGATATCTAACTATAACTGATACAGAAATAGTAGATCAGCAACAAGTTATTGAATATGTTTTAAAAA CTTGTGAAGAAAATAAGTGGAAAGTCGATACTTTATGTTTTGATCCAGCAAATGCAAGTAAAATTATGATGGATTTATCA AATGAAGGATATGCTGTTGAAGAAGTGTATCAATCACATAAGTCTTTAAATGAAAGTACTGCTGGATTTAGAGAGCAGGT TTATTGTAAAAATGTTATTTATACAAATAATCCATTACTTAACTTTTCTATGAGTAATGCAGTAATAAAACAAAATAATG GACTTATCAAAATAGATAAAGATGCAACAATAAAGAGAATAGATCCAGTTGATGCTATGTTATGCGCTTTTAAGTTAGCA TTATATCATGAATTTGTAGACACTGCTGATGTTGATGAATGGCTTGATAGTGATGAATGGTAA
Upstream 100 bases:
>100_bases CTTCACTATGCGGAATGACTATTGACAGCAGATTGAAATGTGCGACAGTTAAGACTACTAAACAGCAAGAAGATATAGTA GATGAATTCGGGGATATTTA
Downstream 100 bases:
>100_bases GGAGGTGAAAAATGAGAATAATAAATAAAGTTAAAAAAATATTTAAAAATGAAGTTGAGACAATAGGTACTAATCCTACT TTAGAGGAACTAAAGGAGTT
Product: putative phage terminase large subunit
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 580; Mature: 579
Protein sequence:
>580_residues MTIKEELIQYANDCINNKVISGQKHKWACLRFLEDLKKSELNILKEPFNYYWNEEEASKIVKWFSYLKHSKGVLAGKFIE LNIWQKFCLCQIYGWEHKETHLRRFTKSFIEVARKNAKSQMEAGVTLYEMSVRATRNREIYECYCAGVKRKQSEVIFNEC KNLLRGSPLKKKFKINKGTIIHIKTGSTLEPLNKQDGKEGDGSNPALLVLDEYHQHKTTEFYDLGLGGNTKESLLMIITT AGVDLTYPCFTQEYSYCSKVLDPNIDIINDEYYIDICEVDEDDDEDNEENWHKANPVRMTYEAGIKKIKEEYKIAKEIPE KMSAFLTKCLNKWVQAKKNGYMDMAKWKKCEVEKIPYNLKNRIVYVGFDMSAKIDLTSVAFIIPILSNEIDKTGKKIVKY LCFSHSFIPNREKLRERTKIDKVPYDAWERLGYLTITDTEIVDQQQVIEYVLKTCEENKWKVDTLCFDPANASKIMMDLS NEGYAVEEVYQSHKSLNESTAGFREQVYCKNVIYTNNPLLNFSMSNAVIKQNNGLIKIDKDATIKRIDPVDAMLCAFKLA LYHEFVDTADVDEWLDSDEW
Sequences:
>Translated_580_residues MTIKEELIQYANDCINNKVISGQKHKWACLRFLEDLKKSELNILKEPFNYYWNEEEASKIVKWFSYLKHSKGVLAGKFIE LNIWQKFCLCQIYGWEHKETHLRRFTKSFIEVARKNAKSQMEAGVTLYEMSVRATRNREIYECYCAGVKRKQSEVIFNEC KNLLRGSPLKKKFKINKGTIIHIKTGSTLEPLNKQDGKEGDGSNPALLVLDEYHQHKTTEFYDLGLGGNTKESLLMIITT AGVDLTYPCFTQEYSYCSKVLDPNIDIINDEYYIDICEVDEDDDEDNEENWHKANPVRMTYEAGIKKIKEEYKIAKEIPE KMSAFLTKCLNKWVQAKKNGYMDMAKWKKCEVEKIPYNLKNRIVYVGFDMSAKIDLTSVAFIIPILSNEIDKTGKKIVKY LCFSHSFIPNREKLRERTKIDKVPYDAWERLGYLTITDTEIVDQQQVIEYVLKTCEENKWKVDTLCFDPANASKIMMDLS NEGYAVEEVYQSHKSLNESTAGFREQVYCKNVIYTNNPLLNFSMSNAVIKQNNGLIKIDKDATIKRIDPVDAMLCAFKLA LYHEFVDTADVDEWLDSDEW >Mature_579_residues TIKEELIQYANDCINNKVISGQKHKWACLRFLEDLKKSELNILKEPFNYYWNEEEASKIVKWFSYLKHSKGVLAGKFIEL NIWQKFCLCQIYGWEHKETHLRRFTKSFIEVARKNAKSQMEAGVTLYEMSVRATRNREIYECYCAGVKRKQSEVIFNECK NLLRGSPLKKKFKINKGTIIHIKTGSTLEPLNKQDGKEGDGSNPALLVLDEYHQHKTTEFYDLGLGGNTKESLLMIITTA GVDLTYPCFTQEYSYCSKVLDPNIDIINDEYYIDICEVDEDDDEDNEENWHKANPVRMTYEAGIKKIKEEYKIAKEIPEK MSAFLTKCLNKWVQAKKNGYMDMAKWKKCEVEKIPYNLKNRIVYVGFDMSAKIDLTSVAFIIPILSNEIDKTGKKIVKYL CFSHSFIPNREKLRERTKIDKVPYDAWERLGYLTITDTEIVDQQQVIEYVLKTCEENKWKVDTLCFDPANASKIMMDLSN EGYAVEEVYQSHKSLNESTAGFREQVYCKNVIYTNNPLLNFSMSNAVIKQNNGLIKIDKDATIKRIDPVDAMLCAFKLAL YHEFVDTADVDEWLDSDEW
Specific function: Unknown
COG id: COG4626
COG function: function code R; Phage terminase-like protein, large subunit
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the phage terminase family [H]
Homologues:
None
Paralogues:
None
Copy number: 10-20 Molecules/Cell [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000524 - InterPro: IPR005021 - InterPro: IPR011991 [H]
Pfam domain/function: PF00392 GntR; PF03354 Terminase_1 [H]
EC number: NA
Molecular weight: Translated: 67528; Mature: 67397
Theoretical pI: Translated: 6.45; Mature: 6.45
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.9 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 5.2 %Cys+Met (Translated Protein) 2.9 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 5.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTIKEELIQYANDCINNKVISGQKHKWACLRFLEDLKKSELNILKEPFNYYWNEEEASKI CCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH VKWFSYLKHSKGVLAGKFIELNIWQKFCLCQIYGWEHKETHLRRFTKSFIEVARKNAKSQ HHHHHHHHHCCCCEEEEEEEEEHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH MEAGVTLYEMSVRATRNREIYECYCAGVKRKQSEVIFNECKNLLRGSPLKKKFKINKGTI HHCCCEEEEEEEHHCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCHHEECCCCEE IHIKTGSTLEPLNKQDGKEGDGSNPALLVLDEYHQHKTTEFYDLGLGGNTKESLLMIITT EEEECCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCEEEECCCCCCCCCEEEEEEE AGVDLTYPCFTQEYSYCSKVLDPNIDIINDEYYIDICEVDEDDDEDNEENWHKANPVRMT CCCCEECCHHHHHHHHHHHHCCCCCEEECCCEEEEEEECCCCCCCCCCCCCCCCCCEEEE YEAGIKKIKEEYKIAKEIPEKMSAFLTKCLNKWVQAKKNGYMDMAKWKKCEVEKIPYNLK HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCHHHCCCCCC NRIVYVGFDMSAKIDLTSVAFIIPILSNEIDKTGKKIVKYLCFSHSFIPNREKLRERTKI CCEEEEEECCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHC DKVPYDAWERLGYLTITDTEIVDQQQVIEYVLKTCEENKWKVDTLCFDPANASKIMMDLS CCCCHHHHHHCCCEEEECHHHHCHHHHHHHHHHHCCCCCEEEEEEEECCCCCCEEEEEEC NEGYAVEEVYQSHKSLNESTAGFREQVYCKNVIYTNNPLLNFSMSNAVIKQNNGLIKIDK CCCCHHHHHHHHHHHCCHHHHHHHHHHHHCCEEEECCCEEEEECCCCEEECCCCEEEECC DATIKRIDPVDAMLCAFKLALYHEFVDTADVDEWLDSDEW CCCEEECCHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCCC >Mature Secondary Structure TIKEELIQYANDCINNKVISGQKHKWACLRFLEDLKKSELNILKEPFNYYWNEEEASKI CHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH VKWFSYLKHSKGVLAGKFIELNIWQKFCLCQIYGWEHKETHLRRFTKSFIEVARKNAKSQ HHHHHHHHHCCCCEEEEEEEEEHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH MEAGVTLYEMSVRATRNREIYECYCAGVKRKQSEVIFNECKNLLRGSPLKKKFKINKGTI HHCCCEEEEEEEHHCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCHHEECCCCEE IHIKTGSTLEPLNKQDGKEGDGSNPALLVLDEYHQHKTTEFYDLGLGGNTKESLLMIITT EEEECCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCEEEECCCCCCCCCEEEEEEE AGVDLTYPCFTQEYSYCSKVLDPNIDIINDEYYIDICEVDEDDDEDNEENWHKANPVRMT CCCCEECCHHHHHHHHHHHHCCCCCEEECCCEEEEEEECCCCCCCCCCCCCCCCCCEEEE YEAGIKKIKEEYKIAKEIPEKMSAFLTKCLNKWVQAKKNGYMDMAKWKKCEVEKIPYNLK HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCHHHCCCCCC NRIVYVGFDMSAKIDLTSVAFIIPILSNEIDKTGKKIVKYLCFSHSFIPNREKLRERTKI CCEEEEEECCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHC DKVPYDAWERLGYLTITDTEIVDQQQVIEYVLKTCEENKWKVDTLCFDPANASKIMMDLS CCCCHHHHHHCCCEEEECHHHHCHHHHHHHHHHHCCCCCEEEEEEEECCCCCCEEEEEEC NEGYAVEEVYQSHKSLNESTAGFREQVYCKNVIYTNNPLLNFSMSNAVIKQNNGLIKIDK CCCCHHHHHHHHHHHCCHHHHHHHHHHHHCCEEEECCCEEEEECCCCEEECCCCEEEECC DATIKRIDPVDAMLCAFKLALYHEFVDTADVDEWLDSDEW CCCEEECCHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8905232; 9278503 [H]