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The map label for this gene is patH [H]

Identifier: 226948679

GI number: 226948679

Start: 1638253

End: 1639071

Strand: Direct

Name: patH [H]

Synonym: CLM_1577

Alternate gene names: 226948679

Gene position: 1638253-1639071 (Clockwise)

Preceding gene: 226948678

Following gene: 226948680

Centisome position: 39.43

GC content: 29.67

Gene sequence:

>819_bases
TTGGAAAAGAAAAAATTATCCTTAATTTTAGTATCAGCTCTAGCAATAATAACTCTTTTAGCTGGTTGTGGAAAGGAAAA
AGCTACTTCAACAGAGGGGCAAAATACAGGAAATAGCAAGAGTGAAAAGAAAATTATAGTTGGAACATCACCAGATTATT
ATCCATGGTGTTATACAGAGGCAGGAAAACTTCAAGGATTTGAAATTGATGCTTGGAATGAAATAGGGAAAAAAGCAGGA
TATGATATTGAATTTAAACAATCAAAATTTAGTGGATTATTTGGAATGTTGGATGCAGGTCAAATAGATACCGTTGCTCA
TCAAATATCAACTACAGAGGAAAGAAGAAAAAAATATGATTTTACAGAAACTTATGCTTATAGTGGATATAGTTTTGTAG
TGAACAAGGATAAAGATATTAAAAGTTTAGAGGATTTAAAAGGTAAAAAAGTTGGATGTACCCTAGGAGGTAATGGAGAA
AAAACTTTAAAAAAATTAAATGAGGAAAAAGGTTTAAATATAAAGGTTTTAACTTATGATCAAACTCCAATGGAGAAAGA
TGTAGAAATTGGAAGGCTTGATGCAGCGTGGATTGGAACTGTTAAGGCTAAAACAGTTATAGAAAAAGAAAAGATGGATC
TAAAACTTTATGATCCAAAATATGTTTTTGAGATTAATCAATATCCATTCAAAAAAGACGGAAAAAATAAAAAAATGCTA
GAAGATATAAATAAAGCTATAAAAGATATGATGGCTGATGGTACAATGAGTAAACTATCACAAAAGTGGTTTAAACTTGA
TATAACTAAAAAGGAATAG

Upstream 100 bases:

>100_bases
TAATAATTTATATAATGTAAAATTTAAAAGTAATAATTTTGAAAAAGGTTTATATGATTTTTATAAATTTTAAAGTGAAA
TTATGGGAGGGAAAATAAAA

Downstream 100 bases:

>100_bases
GTGTGGTAGTATATGATTTTTGACCTAGAATATTTTAATAAATTAGTGCCTTTAATGCTTAAACATTTGAAAGTTACTTT
TACAATTTCTTTTTTAGCAT

Product: amino acid ABC transporter amino acid-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 272; Mature: 272

Protein sequence:

>272_residues
MEKKKLSLILVSALAIITLLAGCGKEKATSTEGQNTGNSKSEKKIIVGTSPDYYPWCYTEAGKLQGFEIDAWNEIGKKAG
YDIEFKQSKFSGLFGMLDAGQIDTVAHQISTTEERRKKYDFTETYAYSGYSFVVNKDKDIKSLEDLKGKKVGCTLGGNGE
KTLKKLNEEKGLNIKVLTYDQTPMEKDVEIGRLDAAWIGTVKAKTVIEKEKMDLKLYDPKYVFEINQYPFKKDGKNKKML
EDINKAIKDMMADGTMSKLSQKWFKLDITKKE

Sequences:

>Translated_272_residues
MEKKKLSLILVSALAIITLLAGCGKEKATSTEGQNTGNSKSEKKIIVGTSPDYYPWCYTEAGKLQGFEIDAWNEIGKKAG
YDIEFKQSKFSGLFGMLDAGQIDTVAHQISTTEERRKKYDFTETYAYSGYSFVVNKDKDIKSLEDLKGKKVGCTLGGNGE
KTLKKLNEEKGLNIKVLTYDQTPMEKDVEIGRLDAAWIGTVKAKTVIEKEKMDLKLYDPKYVFEINQYPFKKDGKNKKML
EDINKAIKDMMADGTMSKLSQKWFKLDITKKE
>Mature_272_residues
MEKKKLSLILVSALAIITLLAGCGKEKATSTEGQNTGNSKSEKKIIVGTSPDYYPWCYTEAGKLQGFEIDAWNEIGKKAG
YDIEFKQSKFSGLFGMLDAGQIDTVAHQISTTEERRKKYDFTETYAYSGYSFVVNKDKDIKSLEDLKGKKVGCTLGGNGE
KTLKKLNEEKGLNIKVLTYDQTPMEKDVEIGRLDAAWIGTVKAKTVIEKEKMDLKLYDPKYVFEINQYPFKKDGKNKKML
EDINKAIKDMMADGTMSKLSQKWFKLDITKKE

Specific function: Probably part of a binding-protein-dependent transport system for an amino acid [H]

COG id: COG0834

COG function: function code ET; ABC-type amino acid transport/signal transduction systems, periplasmic component/domain

Gene ontology:

Cell location: Periplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 3 family [H]

Homologues:

Organism=Escherichia coli, GI1788228, Length=235, Percent_Identity=34.0425531914894, Blast_Score=135, Evalue=3e-33,
Organism=Escherichia coli, GI1788648, Length=236, Percent_Identity=30.9322033898305, Blast_Score=92, Evalue=4e-20,
Organism=Escherichia coli, GI1787031, Length=236, Percent_Identity=28.3898305084746, Blast_Score=80, Evalue=1e-16,
Organism=Escherichia coli, GI1787085, Length=235, Percent_Identity=28.936170212766, Blast_Score=78, Evalue=6e-16,
Organism=Escherichia coli, GI1788649, Length=233, Percent_Identity=27.4678111587983, Blast_Score=77, Evalue=1e-15,

Paralogues:

None

Copy number: 1920 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 1060 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 80 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001638
- InterPro:   IPR018313 [H]

Pfam domain/function: PF00497 SBP_bac_3 [H]

EC number: NA

Molecular weight: Translated: 30706; Mature: 30706

Theoretical pI: Translated: 9.37; Mature: 9.37

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEKKKLSLILVSALAIITLLAGCGKEKATSTEGQNTGNSKSEKKIIVGTSPDYYPWCYTE
CCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCEEECC
AGKLQGFEIDAWNEIGKKAGYDIEFKQSKFSGLFGMLDAGQIDTVAHQISTTEERRKKYD
CCCCCCEEECHHHHHHHHCCCCEEECCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCC
FTETYAYSGYSFVVNKDKDIKSLEDLKGKKVGCTLGGNGEKTLKKLNEEKGLNIKVLTYD
CHHHEEECCEEEEEECCCCHHHHHHHCCCEEEEEECCCCHHHHHHHHHHCCCEEEEEEEC
QTPMEKDVEIGRLDAAWIGTVKAKTVIEKEKMDLKLYDPKYVFEINQYPFKKDGKNKKML
CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEECCEEEEEECCCCCCCCCCCHHHH
EDINKAIKDMMADGTMSKLSQKWFKLDITKKE
HHHHHHHHHHHCCCHHHHHHHHHEEEEEECCC
>Mature Secondary Structure
MEKKKLSLILVSALAIITLLAGCGKEKATSTEGQNTGNSKSEKKIIVGTSPDYYPWCYTE
CCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCEEECC
AGKLQGFEIDAWNEIGKKAGYDIEFKQSKFSGLFGMLDAGQIDTVAHQISTTEERRKKYD
CCCCCCEEECHHHHHHHHCCCCEEECCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCC
FTETYAYSGYSFVVNKDKDIKSLEDLKGKKVGCTLGGNGEKTLKKLNEEKGLNIKVLTYD
CHHHEEECCEEEEEECCCCHHHHHHHCCCEEEEEECCCCHHHHHHHHHHCCCEEEEEEEC
QTPMEKDVEIGRLDAAWIGTVKAKTVIEKEKMDLKLYDPKYVFEINQYPFKKDGKNKKML
CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEECCEEEEEECCCCCCCCCCCHHHH
EDINKAIKDMMADGTMSKLSQKWFKLDITKKE
HHHHHHHHHHHCCCHHHHHHHHHEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA