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The map label for this gene is patM [H]

Identifier: 226948680

GI number: 226948680

Start: 1639084

End: 1639749

Strand: Direct

Name: patM [H]

Synonym: CLM_1578

Alternate gene names: 226948680

Gene position: 1639084-1639749 (Clockwise)

Preceding gene: 226948679

Following gene: 226948681

Centisome position: 39.45

GC content: 31.08

Gene sequence:

>666_bases
ATGATTTTTGACCTAGAATATTTTAATAAATTAGTGCCTTTAATGCTTAAACATTTGAAAGTTACTTTTACAATTTCTTT
TTTAGCATTGATTTTAGGGTTAATTCTTGCTATATTTATAGCAGTAATTAATGAATTAAAAATCAAAGTTCTTTATAGTA
TAAGTAAAATATGGGTATCCTTTTTTAGAGGGACTCCTTTAATTGCCCAATTGTTCTTTTTATATTTTGGTATAGTTCAA
TTAGTACCTAGTTTAAAAAATATGGATGCTATGACTGCAGCCATTATAGGCTTAGGGTTTAATGCCTCAGCTTATATGTC
AGAAACATTAAGGGGAGCTATTTCTTCTGTAGATAAAGGGCAAATAGAGGCAAGTTTATCTATAGGAATGACATCAATTC
AATCCATGAAGAGAATAGTATTTCCACAGGCTGCTAGGGTAGCGCTGCCAGCTCTATCCAATAGCTTTGTAGATATTATA
AAGGGTTCTGCATTAGCTTTTACTTTAGGGGTAGTGGAGATAATGGCGGTGGCACAAAGTGAGGGAGCATCTAGTTATAG
ATTTTTAGAATCTTTTACTGCAGTAATAATTATTTACTGGATTATAATTAGTGCCTTTGGATATTTGCAAAATATACTAG
AAAGAAGAATGAATAATGTTTATTAG

Upstream 100 bases:

>100_bases
TAAAGCTATAAAAGATATGATGGCTGATGGTACAATGAGTAAACTATCACAAAAGTGGTTTAAACTTGATATAACTAAAA
AGGAATAGGTGTGGTAGTAT

Downstream 100 bases:

>100_bases
TAAGGTTGGTGAAAACATATGATAAAAATAAGTAATTTACATAAATCTTTTAATGGAGTAGAAGTATTAAAGGGAATAAA
TCTAGATATAAGAAAAGGAG

Product: amino acid ABC transporter permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 221; Mature: 221

Protein sequence:

>221_residues
MIFDLEYFNKLVPLMLKHLKVTFTISFLALILGLILAIFIAVINELKIKVLYSISKIWVSFFRGTPLIAQLFFLYFGIVQ
LVPSLKNMDAMTAAIIGLGFNASAYMSETLRGAISSVDKGQIEASLSIGMTSIQSMKRIVFPQAARVALPALSNSFVDII
KGSALAFTLGVVEIMAVAQSEGASSYRFLESFTAVIIIYWIIISAFGYLQNILERRMNNVY

Sequences:

>Translated_221_residues
MIFDLEYFNKLVPLMLKHLKVTFTISFLALILGLILAIFIAVINELKIKVLYSISKIWVSFFRGTPLIAQLFFLYFGIVQ
LVPSLKNMDAMTAAIIGLGFNASAYMSETLRGAISSVDKGQIEASLSIGMTSIQSMKRIVFPQAARVALPALSNSFVDII
KGSALAFTLGVVEIMAVAQSEGASSYRFLESFTAVIIIYWIIISAFGYLQNILERRMNNVY
>Mature_221_residues
MIFDLEYFNKLVPLMLKHLKVTFTISFLALILGLILAIFIAVINELKIKVLYSISKIWVSFFRGTPLIAQLFFLYFGIVQ
LVPSLKNMDAMTAAIIGLGFNASAYMSETLRGAISSVDKGQIEASLSIGMTSIQSMKRIVFPQAARVALPALSNSFVDII
KGSALAFTLGVVEIMAVAQSEGASSYRFLESFTAVIIIYWIIISAFGYLQNILERRMNNVY

Specific function: Probably part of a binding-protein-dependent transport system for an amino acid. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0765

COG function: function code E; ABC-type amino acid transport system, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1788226, Length=211, Percent_Identity=43.6018957345972, Blast_Score=166, Evalue=1e-42,
Organism=Escherichia coli, GI1787030, Length=218, Percent_Identity=31.1926605504587, Blast_Score=118, Evalue=2e-28,
Organism=Escherichia coli, GI1787086, Length=213, Percent_Identity=29.5774647887324, Blast_Score=102, Evalue=3e-23,
Organism=Escherichia coli, GI1786874, Length=208, Percent_Identity=29.8076923076923, Blast_Score=100, Evalue=1e-22,
Organism=Escherichia coli, GI1788645, Length=189, Percent_Identity=30.6878306878307, Blast_Score=96, Evalue=2e-21,
Organism=Escherichia coli, GI1786873, Length=219, Percent_Identity=28.310502283105, Blast_Score=86, Evalue=1e-18,
Organism=Escherichia coli, GI1788646, Length=167, Percent_Identity=31.1377245508982, Blast_Score=86, Evalue=2e-18,
Organism=Escherichia coli, GI1787087, Length=234, Percent_Identity=31.1965811965812, Blast_Score=83, Evalue=1e-17,
Organism=Escherichia coli, GI87082239, Length=204, Percent_Identity=24.5098039215686, Blast_Score=80, Evalue=1e-16,
Organism=Escherichia coli, GI48994930, Length=212, Percent_Identity=26.8867924528302, Blast_Score=73, Evalue=1e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010065
- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 24489; Mature: 24489

Theoretical pI: Translated: 9.87; Mature: 9.87

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.1 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIFDLEYFNKLVPLMLKHLKVTFTISFLALILGLILAIFIAVINELKIKVLYSISKIWVS
CEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FFRGTPLIAQLFFLYFGIVQLVPSLKNMDAMTAAIIGLGFNASAYMSETLRGAISSVDKG
HHCCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCHH
QIEASLSIGMTSIQSMKRIVFPQAARVALPALSNSFVDIIKGSALAFTLGVVEIMAVAQS
HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHC
EGASSYRFLESFTAVIIIYWIIISAFGYLQNILERRMNNVY
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MIFDLEYFNKLVPLMLKHLKVTFTISFLALILGLILAIFIAVINELKIKVLYSISKIWVS
CEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FFRGTPLIAQLFFLYFGIVQLVPSLKNMDAMTAAIIGLGFNASAYMSETLRGAISSVDKG
HHCCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCHH
QIEASLSIGMTSIQSMKRIVFPQAARVALPALSNSFVDIIKGSALAFTLGVVEIMAVAQS
HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHC
EGASSYRFLESFTAVIIIYWIIISAFGYLQNILERRMNNVY
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA